MS004714 (gene) Bitter gourd (TR) v1

Overview
NameMS004714
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold741: 381684 .. 381863 (+)
RNA-Seq ExpressionMS004714
SyntenyMS004714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGTAGCAAAGAAATTCTTAGATCAAATTAAATCGAATTCTAACATGAAATTAAATGAGATTCAAGAACTTGTTAAAGTAGACTTTAGAGTTAACATTTCAAAAAGTCAAGCTACTAGAGCAAGGAGAAAGGCCCACAAAAAGTTGAATGGCTCACTAGTTGAGCAATATAGAAGGTTG

mRNA sequence

TGGGTAGCAAAGAAATTCTTAGATCAAATTAAATCGAATTCTAACATGAAATTAAATGAGATTCAAGAACTTGTTAAAGTAGACTTTAGAGTTAACATTTCAAAAAGTCAAGCTACTAGAGCAAGGAGAAAGGCCCACAAAAAGTTGAATGGCTCACTAGTTGAGCAATATAGAAGGTTG

Coding sequence (CDS)

TGGGTAGCAAAGAAATTCTTAGATCAAATTAAATCGAATTCTAACATGAAATTAAATGAGATTCAAGAACTTGTTAAAGTAGACTTTAGAGTTAACATTTCAAAAAGTCAAGCTACTAGAGCAAGGAGAAAGGCCCACAAAAAGTTGAATGGCTCACTAGTTGAGCAATATAGAAGGTTG

Protein sequence

WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQYRRL
Homology
BLAST of MS004714 vs. NCBI nr
Match: XP_028125572.1 (uncharacterized protein LOC114322469 [Camellia sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 25/60 (41.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1   WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQYRRL 60
           W++KK+L+ +KSN ++ +   +++V+ D +V IS+SQ  R +RKA + + GSL+EQY +L
Sbjct: 211 WLSKKYLETLKSNPSILVQSFKQIVQKDHKVGISRSQVYRTKRKAQELIEGSLMEQYAKL 270

BLAST of MS004714 vs. NCBI nr
Match: XP_028097752.1 (uncharacterized protein LOC114297512 [Camellia sinensis])

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 25/60 (41.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1  WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQYRRL 60
          W++KK+L  +KSN ++ +   ++ ++ D +V ISKSQ  R +RKA + + GSL+EQY +L
Sbjct: 31 WLSKKYLKTLKSNPSITIQSFKQAMQKDHKVGISKSQVYRTKRKAQELIEGSLMEQYAKL 90

BLAST of MS004714 vs. NCBI nr
Match: XP_038696072.1 (uncharacterized protein LOC119993166 [Tripterygium wilfordii])

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 26/60 (43.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1   WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQYRRL 60
           W+A + +D+++ N  MKL EI + V+  + ++ISK+ A+RAR+KA + ++GS  EQY+RL
Sbjct: 212 WLANRLVDKMRRNPKMKLAEIMQKVRDKYTIDISKTLASRARKKALEVVHGSYAEQYKRL 271

BLAST of MS004714 vs. NCBI nr
Match: KAG5521123.1 (hypothetical protein RHGRI_033621 [Rhododendron griersonianum])

HSP 1 Score: 53.1 bits (126), Expect = 9.4e-04
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1   WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQYRRL 60
           ++A K++D I+SN NM L  +QE V+ D  VN+S +QA RA+RKA   + G+ +EQY  L
Sbjct: 292 YLANKYVDSIRSNPNMPLEHLQERVRKDIVVNVSTTQAYRAKRKALDLIEGTHMEQYALL 351

BLAST of MS004714 vs. NCBI nr
Match: KAG5521125.1 (hypothetical protein RHGRI_033621 [Rhododendron griersonianum])

HSP 1 Score: 53.1 bits (126), Expect = 9.4e-04
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1   WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQYRRL 60
           ++A K++D I+SN NM L  +QE V+ D  VN+S +QA RA+RKA   + G+ +EQY  L
Sbjct: 292 YLANKYVDSIRSNPNMPLEHLQERVRKDIVVNVSTTQAYRAKRKALDLIEGTHMEQYALL 351

BLAST of MS004714 vs. ExPASy TrEMBL
Match: A0A6P6WPG6 (uncharacterized protein LOC113734809 isoform X1 OS=Coffea arabica OX=13443 GN=LOC113734809 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1   WVAKKFLDQIKSNSNMKLNEIQELVKVDFRVNISKSQATRARRKAHKKLNGSLVEQY 58
           W+A ++ DQIKSN  M   +I++ V   ++  IS+S A +AR KA K + GS+ EQY
Sbjct: 368 WLANRYEDQIKSNMYMPAKQIRQAVDEQYKCEISRSMAYKARTKARKNIKGSVAEQY 424

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_028125572.11.4e-0441.67uncharacterized protein LOC114322469 [Camellia sinensis][more]
XP_028097752.14.2e-0441.67uncharacterized protein LOC114297512 [Camellia sinensis][more]
XP_038696072.14.2e-0443.33uncharacterized protein LOC119993166 [Tripterygium wilfordii][more]
KAG5521123.19.4e-0446.67hypothetical protein RHGRI_033621 [Rhododendron griersonianum][more]
KAG5521125.19.4e-0446.67hypothetical protein RHGRI_033621 [Rhododendron griersonianum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P6WPG67.7e-0443.86uncharacterized protein LOC113734809 isoform X1 OS=Coffea arabica OX=13443 GN=LO... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004714.1MS004714.1mRNA