MS004713 (gene) Bitter gourd (TR) v1

Overview


Name	MS004713
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ubiquitin receptor RAD23
Location	scaffold741: 358653 .. 366327 (-)
RNA-Seq Expression	MS004713
Synteny	MS004713

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTGGGTGTAAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCTTGTGGTCAGCAATTGTTAATCCACAATGGGAAGGTTTTAAAAGATGAAACAACCCTAGCAGAGAACAAGGTTTCTGGAGATGGTTTTCTCGTTGTTATGCTTAGTAAGGTATGTTGTGTTGTAGCTAACTTGAATACCCTTTAAGAAACAATAAGGCTGCTTTTCTGACTATTATATTGCATATATACAAATGGCTTTGGCTATGATGAACTACTACACGATTATCTTCTTTTATATTATGAGAATTGCGGATTAAAGTCACTGTAGTATACTATTAGTATCCATCTTGTGGCTATCATTGGCCTAGTGGCTCATGTTTTGATGTTCAACATCTGTCAAAGTGTAAAGTTATATTGATGTTACTTTAACACCCAAGGGTAAGTATTAGAATTTTTTTACACTTCCATGAAAAATATGATATGTTTGGTAATAGATATTTTCATGCTGAGATGTCTTGTGAACGACAACAATAACTATATTATGAATCATTCTCTATATGCAAGAAAATTTAATCTTGTTGTTGAATATATTCATACAATTCCTTTCATTATTTCAAATGGTATCTTAAAATCATTGTTTTAGGAAACGGTTCTTTCTAGAACGTCTAAATAATATTGTTCTTTGTGACATAGATGATGTCAAGATAGTGGTTTGATGATTATAATTTTGGCCCCAAGGCGCAGCCCTGTTGGCAAGGACTTGAGATCTCTTGGTCACATTGGCTTAGAGGTCTCAGGTTCAAACCTTCTGGTGAGTTTAATACCAAAAATCCTTGATGTCTCTGGGTCTGGGCCTTGGGTGGGTGCGGGTGCCCTTGGGTAAAGCTCCGACTCCCGGTTATAAAAAAAAAAAAAATTTATAATTTGCCATTACCATTCCTTAATATAAGTTTGATATGTATACAGGAGTTCTTGATCTTTATTCCATTTCGTTAAATAGTTTCTTCATGCAGTAAGTTGGTTATTGGGGTTAATCCCTTACCGATAGTTATTGAGCAGGATGTGAAGTCTAGATCTGCTTGTGGGAAATAGTGCGAACTTTGTTTTTATGTTTTATGTTGACTACCTATTTGGTTAAATGGGAGACATAGTTTTATCAAAATTTATGGCTTTGCATTATTAGAAGCAGACTATGCGGCTAAAGGTTTTGGCTTCCTTTTTCCTATCTGGGAATTCCTTTGGGTGGCAATTATAAGAAAAAAGCTTTCTGGGATCCTCTGATTGATAAAGTAAGGCAAAAGATAGACAAATGGAAGAACCTCTTCGTTTCAAAAGGTGGTAGACTCACTCTCGCGCAATCGGTGATCACAAGTCTTCCCCTCTACTTCTTCTCAATTTTAAAGGCTCCTATGAAGGTCATAAATGAAATTGAGAAGCTGTCTCGAGATTTCTTCTAGAAAGGGAATGGCAATAATGGCTCTATTTCTCACCTGGTGAATTGGGGAAAGACCGCTCTTCCGTTGCAATATGGAGGTCTTGGTATAGGAGCTTTACAACGACAGAACAATAGTTTACTCCTTAAATGGCTTTGGAGATTCACTCACGAAGACAATGCTCTTTGGAGGAAGGTTATAGTTAGCATTTACGGTGAAGATCCTCACTGGTGGAATACCCTTCCTCCTAAAGGATGTGCCAGGGGAAGACCGTGGTTCGATATTTTCAAGTATAGCTCGTTTTTTTCCAAGTTCCTTGAGTTCAAGATGAGGAAAGGGAATGTAATTAAATTCTGGTCAGACAGTTGGATTGGGAATGATTCTCTCCAAAAGATGTTCCTTGACATGTTCAATCTCTCTACAAAAAAGGAAGCAATAGTCATGGAGTGTTGGAATGCTAATGAGAACGATTGGGAGAGGTCTTTTTGTTTGGGAGCTTGAAAACTGGATAAATCTTATCCAAGTTATCGATGTGGTGAGATTGGGGGAGGGAGAGGATCGGGTTTTGTGGTCTCTAGGAAAAAATGGTCAGTTCTTTCTCGCTCAGCCTGTTTGAAGCTGATGGATCGTAGCCCTTCTTTGAGATCACCCCTCATCTCGGCAATATGAAATTTTAAGGTCCCAAAAAAGATCAAAGTCTTTCTTTGGTCTCTAGTTCATAGAAGCCTTAATACACATGAGAATTTACAAAAAAGTGCAAGAATTGGGTGTTATCCCCTTCGGTCTGCTCCTTTTGTTTGAATCTGCTCCTTTTGTTTGAATCACAGTGAGAATATAGATCACATATTTCTGCACTGTTCTTTTGTGGAAAAGAACTGGTTTCTCCTATTAGACACCTTTGAAATCTCTATTTGCTTCCCAAAAATGGTAGATGATTGGATGGTTGAAGTGCTATATGGGTGGACTCTTCCTAAGAAGACTGAGTTTATTTGGAAATGTGCTTCGAGGGTTCTCCTCTGGAATCTATGGCTAGAAAGAAATTCTCGCATGTTTGAAGATAAGTTAACTATTTTTTTGTAGGAATGTACAGCACACGACCTCTCGGTGGCGTATCAATTATAGCAAATTCTTTTGTAATTACAACCTTTCCATGTTTATGCACAATTGGAAAGCGGTTGTTTAGCTTTTTGGTGGGGTTTCCTCTACCCCAGCCTCTAGTTTGTTCTTTCTTTTTTGATCAATACAGAGAAGTTTCTTATCTAAAAAAAAGGTTTTAAACGTAGTTAAATGAAATTCATAAGAGTTGTGATAAGATAATGTGAGAGTTCTAATAGGGATAGTTTGGGAATAGTATTAGTATATTAGTTAGGGGCATTATGATAATAAGTTAGGGGTAAGTTGGATATAAATAGAGGTAATAGGGAGAGAAGGAGGACATCTGGGAGGAATAGTTTAAGATGGGAGAACATAGTATAGGTCTTGGGAGAGGTATAGCCCTCTTGAAAGGCTATTGATATTGTAATGTCTCTTTGATATTGCAATATAGTTATCTTGTTACTTTCTTGCATTCGGGTTCCTAACAAATTGGCATGAGATCATCAATTCTGGCCATGGGTCTTGTATTAGAATCAGTGCTGAAGTTACAGAGATCGTTGGTCGAAGAGAGTGAAATTATGAGAGAAATTCAATGGGGTTTACCGGTAGAAGAAGCACGATGGATAATGCGATAAATGGAAAATGGGTTAGCGAAGTCAAATTGTTGAAAGGATCAACATCTAAGAGACCCATCCTATAGCTATTAGGCGTTTGGAAGCAGGGGCGGAGGGTTGTTAGAAGGTGGCGATCGAACCCAAGAATCCCGACTAGAGTGCTATGGAAAATCAATCAAGGTTTGAAAGCGTTTCCGTGCAAGGATCATCCTTTGAAAACATACGAGAAGAATAGTCGTTGACCGAGGGTGAGGATATTGAGAAGGAGAAAAAGAAGGCAATGACCACGACAAAAAAAGCTTGAAAGGAAGTACGAAGGAGAAATAAAATGGCAAAGAGGGAACTACAAGATTCTGGTGGGCATGGGGTCAGAGTTGCACGGATGGCGAACGAAGAAGCAGCAGAAGGGAAGTAGGTGAAGATGGAATGAGTTCGAAAAGCAAGATGAAGGAGAAATCGGAGGGTGAAGAAGGAACGACAAGAGTTCGGCGTGCATCAGATCAGAATTAGATGGTGGCTGACAGAGGAAGAAGTGGCAGAAAAATAAGTTGCGTAAGAGGGTTGGGCGACTATGGAAAAGTAAGGTGCACGGGGGGAGAAAGCATGAGGCTAGGGTTAGGGTAACCATACAAGGTTGTATCTAAAGGAAATAAACTATTTAGGCTGGAGCTAGGGCTAAACCAATTTAAAAAGGCTGATTTGTTAAAAAGACAAAAATATTGGATACTTTGGCATATGGATTTAATCCCAAAACTTGACCCGATTTGGCAAACACCCTACCCATGTGGAGAAAGTAACCCTACTCGCCACAAGAAACCCTCCAACCGTCGTTCACCTGCACCACCAATGTCGTTGTGCGAGGGCAATTTTCACCACCGACGTTTCTACCGTTGCCCTTTTCCACACGACTACATGCAGGGTGCGATGTCGCACCACAGAATGGACTCGGTGTCATCCTCCATCTCACGCAGACTCTGCTTCTACGATGACCGCTGCTGCCCGTCATGCATCCGTCGAACAAGTGTGCTGCTGTCTGCTGCATGTTGTTGTCCGATGCGTTTGTCACACACCAACGTCGCCATTGTTGTTGCACACCATTGCACGCCATTGTCTGGCGTTGCCACTACCCTGCCGACTCGCACACCATCACCACCGGCTAACGTACTAGGTTGTATGCCACCCACCACCACCATCTACCGCACGAGCCACCGTCCGCCGCACACCCATCAGAACAACAGATTCAAAACCTAGAGTTAGATATCTGACTAGGTTTCTAATTTTGTTGGTGAAAAAAAGGTTAAATTTGTTTAACCACACCTTGAGGTCAAGGTGTCTTTGAAGGGTGGGGTAATGTGAGAGTCCTAATATGGATAGTTTGGAAATAGTATTTTATATTAGTTAGGGACATTGTGGTAATTAGTTAGGGGTAAGTTGGATATAAATAGATGTAATAGGGAGAGGACATCTGGTTGGAATAGTTTAAGGTGAGACTTGGGAGGACTTAGCATAGTTCTTGGGAGAGAGATAGCCTTCTCGAAATTTTTTTGATATTGTAACGTGGCTTTTTTTTTTTAATACAACATCTGGGGGTGGAGGGATTTGAACTCACGACCTTCTTGTCGAACACATATGTCTTAACTCGCTATGCTATGTTGAGGTTGGCGATGTTGTAACGTCCCTTTGATATTGCAATATAGTTAGTTATCTTGTACTTTCTTATATTTGAAATCTTAACAGATAACCATCATGGATTGGTCCAGTGATCCAAAGGGGGTCAAGGTAAATTCTAAAGAATTTAGAAAGAATGGGTTCAAATCATAGTGGCCACCTATCTAGGATTTAATACTCTATGAGTTTTCTTAGCAACCAAATATTGTAGGGTCAGACGGTTGTTCCGTGAGATTACTTGAGACGTGCGCAAGCTAGCCCTGACATTTACGAATATAAAAAAAGAGTTGTCATAAGATTGGTAATGTCACAACAAATTGTATTATTATTCCTCCGGATTGTCCACCTAAATAGTGGTTACTTGTTATTTGTTAATTCATTGATTTTTCAAGAGTTTTTGTTCAGTCATGCGTTTGTTTAATTTATTGTCATCACTTTTTCTCTTTCTGAGATTCCTGGATTTGTATTGTTATTTATTTATTTTGTCTCACTGGTTTTCTTAATGACAGAGTAAAACAGTTGGTTCAGCTGGGTCATCATCTACTCAGGTTAAATATTTTACCTCCTTTTTTTGTGGGCAATAATGTAATTTATGTGCATTTCTGTCTGAAGCTGATTTTGTATGTCTACTTGACAGACAACTACCAATGCACCAACAACTACTCCAACATCAAATTCTACTTCCACTCCTGAAGCTCCTACACAAACACAACCACCGTGAGTTTATTGATGATCCCAGTATAGTATCCTCTCCCACTTAGCAGCACTTCAGTTAGATAATCCTATATTGCTTTTGCAGAGCCTCAAGGGATGTCGCTACTTCAGATGTGCCAACAGCAAAGTATGAGCTCTGTTTCTGCTTACTACTGTATCATTTTGAATCTATAATTTGCTGCCTGCGAGTTTTCTTGTTCACTTTTGGAGATTCTTTATGTGATTGGGTCAATGCTCTAACTTTAATACCATGAGGTATCTATCTAATATTTTTGTTATGCTGTGAAATTTTTGGAGGATAGGTGGGATTTGATTAGATTTAACATAACATTTAGAGGGGTTAGAATTCTTGGGAGGAATCATAGGATTTGATCAGATTTAATACTTCTTTGTGGGCTTTGGTTTCAAAGGTTTTTTTTCCCCCTTTTTTGTAATCACCAGTTAGATGTGGATTGGAGTCCCTTTCTTTAGGGTTGACCGGTTGAACTCATTTTATTAGGCTGTTTTGTTTTTTGATATGCCTTGTATATTCTTTTATATTTTCCATGAAAGCTTGGTTTCTTATAAAAAAGAATTATATACACATATATATATCTTCTTATGCTGCAGTGCGCAAATCGATACATATGGACAAGCTGCTTCAAATTTAGTTTCTGGGAATAACCTTGAGCAGACTATTCAAGAAATAATGGATATGGGTGGTGGCAACTGGGATAGAGAAACGGTTACCCGTGCACTTCGTGCAGCTTATAATAATCCAGAGCGGGCAGTAGATTATTTGTACTCTGTATGTTTAAACTGCTTCACTAATAGTCTTTTTAGTTTTGTGTCAAATTAGTTACTGGATGTGGCTTTATTTTCAGGGTATTCCAGAAACCACAGAAGTTGCAGCTCCGGTGGCTCGTCCCCCAACTAGCCAGCCTATGGAAACAGGTGGTGCAACTGCTACCCCTGTTTCTGGAGCTCCTAACTCATCTCCCTTGAATATGTTTCCACAGGTAGGACTTTGTACTTGGTTTGAAATTTTGTCATTTTTTATCATTTTTCTTCTTTTTAAATACTCATTGAGAGCTAGTGCTTTAGGAGTCCCTTGGTGCTACTGCTGCTGGTGGTGGTGGTGGTAGCCTTGGATCTCTTGAGTTCCTTAGAAACAATCCACAGGTATTCTTTATTTCTCCCCGTTTTTTTTTTCTCTCTCTTTTATTTTATTTTTTATAATGATTTTGGTATGACTATAATGCCATAATGCCTATGGCCTTCTGATAACTTTTTCATTGGTTTTGAAAATTTTCATTATTAAGAACAATTTTGATCAGAACATGTTCATCTTTGCTGCCTAGCTTACTGAGCCGTGGCATCTTCTTTGAAGTCTCATGCTAATTGAAAAGATGATCAGTCAACTTGAGCATAGTATTGCAAACAATTGCAAAGTAAAAAATACATTACAGCCAAAGGGCATTTCTTTATGTCACTTGATTATATGATCTGTTTAGGCTTCCATTTATTTGCATTAATTCTGACAAATCTGACATGTACTGTTACCATCCACACGAATGTTAGTTCCAAGCATTGCGGTCTATGGTGCAAGCCAATCCGCAAATATTACAGGTTTGTCTTATTCTTCTTAAAGACTCGGCTTTGAATCTGTGGTTCTTTTGGCTAAATCTCAAGTCGTGTGAACTTTACCTCTGTTTCAGGCCATGCTTCAGGAGCTTGGGAAGCAGAACCCTCAGCTTTTGAGATTAATTCAGGATCATCAAGCAGAGTTTCTCCAGTTAATAAATGAGCCTCTTGAGGGCTTCGAAGGGCAAGTCTTCTCGTCCATTTGTTGCCAATGCTTTATATTTGTTTATAGACATGTGTCTGAATTTTTCTTTTCTTCCAGGGATCTATTTGATCAGCCTGACCAAGACATGCCCCATGCTATCAATGTCACGCCAGCTGAGCAGCAAGCGATCGAACGAGTAAGTTATCTTCATTTAAATACGTCCTGATATCAATCAACAATCTATTTACTGTCTTCTCTCTTGTACACCCATTGTAGCTGGAAGCAATGGGGTTTGATAGAGATCAAGTGATTGAGGCATTTTTAGCTTGCGACCGCAATGAGGAATTGGCTGCCAACTATCTCTTGGAACATGCTGGCGAATACGAGGAT

mRNA sequence

GTCTTGGGTGTAAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCTTGTGGTCAGCAATTGTTAATCCACAATGGGAAGGTTTTAAAAGATGAAACAACCCTAGCAGAGAACAAGGTTTCTGGAGATGGTTTTCTCGTTGTTATGCTTAGTAAGAGTAAAACAGTTGGTTCAGCTGGGTCATCATCTACTCAGACAACTACCAATGCACCAACAACTACTCCAACATCAAATTCTACTTCCACTCCTGAAGCTCCTACACAAACACAACCACCCTTGGTTTCTTATAAAAAAGAATTATATACACATATATATATCTTCTTATGCTGCAGTGCGCAAATCGATACATATGGACAAGCTGCTTCAAATTTAGTTTCTGGGAATAACCTTGAGCAGACTATTCAAGAAATAATGGATATGGGTGGTGGCAACTGGGATAGAGAAACGGTTACCCGTGCACTTCGTGCAGCTTATAATAATCCAGAGCGGGCAGTAGATTATTTGTACTCTGGTATTCCAGAAACCACAGAAGTTGCAGCTCCGGTGGCTCGTCCCCCAACTAGCCAGCCTATGGAAACAGGTGGTGCAACTGCTACCCCTGTTTCTGGAGCTCCTAACTCATCTCCCTTGAATATGTTTCCACAGGAGTCCCTTGGTGCTACTGCTGCTGGTGGTGGTGGTGGTAGCCTTGGATCTCTTGAGTTCCTTAGAAACAATCCACAGTTCCAAGCATTGCGGTCTATGGTGCAAGCCAATCCGCAAATATTACAGGCCATGCTTCAGGAGCTTGGGAAGCAGAACCCTCAGCTTTTGAGATTAATTCAGGATCATCAAGCAGAGTTTCTCCAGTTAATAAATGAGCCTCTTGAGGGCTTCGAAGGGCAAGTCTTCTCGTCCATTTGTTGCCAATGCTTTATATTTGTTTATAGACATGTGTCTGAATTTTTCTTTTCTTCCAGGGATCTATTTGATCAGCCTGACCAAGACATGCCCCATGCTATCAATGTCACGCCAGCTGAGCAGCAAGCGATCGAACGACTGGAAGCAATGGGGTTTGATAGAGATCAAGTGATTGAGGCATTTTTAGCTTGCGACCGCAATGAGGAATTGGCTGCCAACTATCTCTTGGAACATGCTGGCGAATACGAGGAT

Coding sequence (CDS)

GTCTTGGGTGTAAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCTTGTGGTCAGCAATTGTTAATCCACAATGGGAAGGTTTTAAAAGATGAAACAACCCTAGCAGAGAACAAGGTTTCTGGAGATGGTTTTCTCGTTGTTATGCTTAGTAAGAGTAAAACAGTTGGTTCAGCTGGGTCATCATCTACTCAGACAACTACCAATGCACCAACAACTACTCCAACATCAAATTCTACTTCCACTCCTGAAGCTCCTACACAAACACAACCACCCTTGGTTTCTTATAAAAAAGAATTATATACACATATATATATCTTCTTATGCTGCAGTGCGCAAATCGATACATATGGACAAGCTGCTTCAAATTTAGTTTCTGGGAATAACCTTGAGCAGACTATTCAAGAAATAATGGATATGGGTGGTGGCAACTGGGATAGAGAAACGGTTACCCGTGCACTTCGTGCAGCTTATAATAATCCAGAGCGGGCAGTAGATTATTTGTACTCTGGTATTCCAGAAACCACAGAAGTTGCAGCTCCGGTGGCTCGTCCCCCAACTAGCCAGCCTATGGAAACAGGTGGTGCAACTGCTACCCCTGTTTCTGGAGCTCCTAACTCATCTCCCTTGAATATGTTTCCACAGGAGTCCCTTGGTGCTACTGCTGCTGGTGGTGGTGGTGGTAGCCTTGGATCTCTTGAGTTCCTTAGAAACAATCCACAGTTCCAAGCATTGCGGTCTATGGTGCAAGCCAATCCGCAAATATTACAGGCCATGCTTCAGGAGCTTGGGAAGCAGAACCCTCAGCTTTTGAGATTAATTCAGGATCATCAAGCAGAGTTTCTCCAGTTAATAAATGAGCCTCTTGAGGGCTTCGAAGGGCAAGTCTTCTCGTCCATTTGTTGCCAATGCTTTATATTTGTTTATAGACATGTGTCTGAATTTTTCTTTTCTTCCAGGGATCTATTTGATCAGCCTGACCAAGACATGCCCCATGCTATCAATGTCACGCCAGCTGAGCAGCAAGCGATCGAACGACTGGAAGCAATGGGGTTTGATAGAGATCAAGTGATTGAGGCATTTTTAGCTTGCGACCGCAATGAGGAATTGGCTGCCAACTATCTCTTGGAACATGCTGGCGAATACGAGGAT

Protein sequence

VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGSAGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEVAAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHAGEYED

Homology

[Close]

BLAST of MS004713 vs. NCBI nr
Match: XP_022150127.1 (ubiquitin receptor RAD23b-like [Momordica charantia])

HSP 1 Score: 633.6 bits (1633), Expect = 1.1e-177
Identity = 342/386 (88.60%), Postives = 346/386 (89.64%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS
Sbjct: 23  VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
           AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPP     +++ T        +AQIDTYG
Sbjct: 83  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPA---SRDVATS--DVPTTNAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 377

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEHAGEYED
Sbjct: 383 EAFLACDRNEELAANYLLEHAGEYED 377

[Close]

BLAST of MS004713 vs. NCBI nr
Match: KAA0053718.1 (ubiquitin receptor RAD23b-like [Cucumis melo var. makuwa] >TYK17740.1 ubiquitin receptor RAD23b-like [Cucumis melo var. makuwa])

HSP 1 Score: 580.9 bits (1496), Expect = 8.3e-162
Identity = 318/386 (82.38%), Postives = 326/386 (84.46%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPCGQQLLIHNGKVLKDETTL ENK++ DGFLVVMLSKSK  GS
Sbjct: 11  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 70

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTTN PTTTPT NSTS PEAPTQ   P  S        I      +AQIDTYG
Sbjct: 71  TGSSSTQTTTNVPTTTPTPNSTSIPEAPTQ---PAASRN----VAISDVPTANAQIDTYG 130

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 131 QAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 190

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQP+E GGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 191 AAPVARPPTSQPIEAGGATAPPVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 250

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 251 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 310

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 311 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 362

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 371 EAFLACDRNEELAANYLLEHGGEFED 362

[Close]

BLAST of MS004713 vs. NCBI nr
Match: XP_008443453.1 (PREDICTED: ubiquitin receptor RAD23b-like [Cucumis melo] >XP_008443454.1 PREDICTED: ubiquitin receptor RAD23b-like [Cucumis melo])

HSP 1 Score: 580.9 bits (1496), Expect = 8.3e-162
Identity = 318/386 (82.38%), Postives = 326/386 (84.46%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPCGQQLLIHNGKVLKDETTL ENK++ DGFLVVMLSKSK  GS
Sbjct: 23  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTTN PTTTPT NSTS PEAPTQ   P  S        I      +AQIDTYG
Sbjct: 83  TGSSSTQTTTNVPTTTPTPNSTSIPEAPTQ---PAASRN----VAISDVPTANAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQP+E GGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTSQPIEAGGATAPPVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 374

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 383 EAFLACDRNEELAANYLLEHGGEFED 374

[Close]

BLAST of MS004713 vs. NCBI nr
Match: XP_038905754.1 (ubiquitin receptor RAD23b-like [Benincasa hispida])

HSP 1 Score: 577.8 bits (1488), Expect = 7.0e-161
Identity = 319/386 (82.64%), Postives = 326/386 (84.46%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPCGQQLLIHNGKVLKDETTL ENKV+ DGFLVVMLSKSK  GS
Sbjct: 23  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKVTEDGFLVVMLSKSKAPGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTTN PTTTPT N TS P+APTQ   P  S        I      +AQIDTYG
Sbjct: 83  TGSSSTQTTTNVPTTTPTPNPTSIPQAPTQ---PAASRN----VAISDVPTANAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQP+ETGGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTSQPIETGGATA-PVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 373

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 383 EAFLACDRNEELAANYLLEHGGEFED 373

[Close]

BLAST of MS004713 vs. NCBI nr
Match: XP_004147454.1 (ubiquitin receptor RAD23b [Cucumis sativus] >KGN59613.1 hypothetical protein Csa_002691 [Cucumis sativus])

HSP 1 Score: 570.5 bits (1469), Expect = 1.1e-158
Identity = 313/386 (81.09%), Postives = 322/386 (83.42%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPC QQLLIHNGKVLKDETTL ENK++ DGFLVVMLSKSK  GS
Sbjct: 23  VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTT  PTTTPT NSTS PEAP Q   P  S        I      +AQIDTYG
Sbjct: 83  TGSSSTQTTTIVPTTTPTPNSTSIPEAPAQ---PAASRN----VAISDVPTANAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPT QP++ GGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTGQPIDAGGATAPPVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 374

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 383 EAFLACDRNEELAANYLLEHGGEFED 374

[Close]

BLAST of MS004713 vs. ExPASy Swiss-Prot
Match: Q84L33 (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3)

HSP 1 Score: 444.9 bits (1143), Expect = 9.3e-124
Identity = 247/392 (63.01%), Postives = 295/392 (75.26%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L ENKV+ +GFLVVMLSKSK+ GS
Sbjct: 23  IMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQ------PPLVSYKKELYTHIYIFLCCSA 120
           AG +S QT++ +   + T++ST  P AP+ TQ       P+ + ++            +A
Sbjct: 83  AGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSSPVPASPIPAQEQP-----------AA 142

Query: 121 QIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGI 180
           Q DTYGQAAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYSGI
Sbjct: 143 QTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 202

Query: 181 PETTEVAAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGS 240
           P+T EVA PV   P +Q   +G A   P SG PNSSPL++FPQE    T A  G G LG+
Sbjct: 203 PQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQE----TVAAAGSGDLGT 262

Query: 241 LEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGF 300
           LEFLRNN QFQ LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+NEP EG 
Sbjct: 263 LEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGS 322

Query: 301 EGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGF 360
           +G+                         D+FDQP+Q+MPHAINVTPAEQ+AI+RLEAMGF
Sbjct: 323 DGE------------------------GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGF 371

Query: 361 DRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           DR  VIEAFLACDRNEELAANYLLE++G++ED
Sbjct: 383 DRALVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of MS004713 vs. ExPASy Swiss-Prot
Match: Q84L32 (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2)

HSP 1 Score: 425.6 bits (1093), Expect = 5.9e-118
Identity = 245/388 (63.14%), Postives = 283/388 (72.94%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL ENKV+ +GFLVVMLSKSKT  S
Sbjct: 23  IMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
           AG SSTQ T+   TTT T +ST T  AP+ TQ   V                +AQ DTYG
Sbjct: 83  AGPSSTQPTS---TTTSTISST-TLAAPSTTQSIAVPASNSTPVQEQ----PTAQSDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAAS LVSG+++EQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYSGIPET  +
Sbjct: 143 QAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI 202

Query: 181 AAPVARPPTSQPMETGG--ATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFL 240
                 P T+      G   TA P SG PNSSPL++FPQE++   A    GG LG+LEFL
Sbjct: 203 ------PATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAA----GGDLGTLEFL 262

Query: 241 RNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQV 300
           R N QFQ LRSMV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+NEP EG +G V
Sbjct: 263 RGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 322

Query: 301 FSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQ 360
                                   D+FDQPDQ+MPH++NVTP EQ++IERLEAMGFDR  
Sbjct: 323 ------------------------DIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAI 368

Query: 361 VIEAFLACDRNEELAANYLLEHAGEYED 387
           VIEAFL+CDRNEELAANYLLEH+ ++ED
Sbjct: 383 VIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]

BLAST of MS004713 vs. ExPASy Swiss-Prot
Match: Q84L31 (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 5.5e-92
Identity = 215/427 (50.35%), Postives = 272/427 (63.70%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           V+ VKKNIE VQG D YP  +Q+LIH GKVLKDETT+ ENKV+ + F+V+M++KSK   +
Sbjct: 23  VVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASA 82

Query: 61  AGSSSTQTTTNAPTTTPTSN----------STSTPEAPTQTQPP---------LVSYKKE 120
           A SS++  T+ A +  P+++          S S P AP  T+PP          V+  + 
Sbjct: 83  AASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATET 142

Query: 121 LYTHIYIFLCCS--------------AQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNW 180
           + T I   +  +              +Q D YGQAASNL +G+NLE TIQ+I+DMGGG W
Sbjct: 143 VTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTW 202

Query: 181 DRETVTRALRAAYNNPERAVDYLYSGIPETTEVAAPVARPPTS------QPMETGGATAT 240
           DRETV  ALRAA+NNPERAV+YLY+GIPE  EV  PVARPP S       P +T    A 
Sbjct: 203 DRETVVLALRAAFNNPERAVEYLYTGIPEQAEV-PPVARPPASAGQPANPPAQTQQPAAA 262

Query: 241 PVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAM 300
           P SG PN++PL++FPQ   G    GG  G+ G+L+FLRN+ QFQALR+MVQANPQ+LQ M
Sbjct: 263 PASG-PNANPLDLFPQ---GLPNVGGNPGA-GTLDFLRNSQQFQALRAMVQANPQVLQPM 322

Query: 301 LQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFSSICCQCFIFVYRHVSEFFFSS 360
           LQELGKQNP L+RLIQDHQA+FL+LINEP+EG                           S
Sbjct: 323 LQELGKQNPNLMRLIQDHQADFLRLINEPVEGGG------------------------ES 382

Query: 361 RDLFDQPDQDM--PHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLE 387
            +L  Q    M  P AI VT  E++AIERLEAMGF+R  V+E F AC++NEELAANYLL+
Sbjct: 383 GNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLD 419

[Close]

BLAST of MS004713 vs. ExPASy Swiss-Prot
Match: Q84L30 (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2)

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-90
Identity = 204/398 (51.26%), Postives = 256/398 (64.32%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           V  VK  IE V+G + YP  +Q+LIH GKVLKDETTL EN V  + F+V+MLSK+K   S
Sbjct: 23  VSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
             S+++    +A  T P + +T    APT + P   S      T        S Q D YG
Sbjct: 83  GASTASAPAPSA--TQPQTVATPQVSAPTASVPVPTS---GTATAAAPATAASVQTDVYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLV+G  LE T+Q+I+DMGGG+WDR+TV RALRAA+NNPERAV+YLYSGIP   E+
Sbjct: 143 QAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEI 202

Query: 181 AAPVARPPTSQPMETGGATATPV------------SGAPNSSPLNMFPQESLGATAAGGG 240
                 PP +Q   TG   A P+            +G PN++PLN+FPQ   G  AA  G
Sbjct: 203 ------PPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQ---GMPAADAG 262

Query: 241 GGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLIN 300
            G+ G+L+FLRN+ QFQALR+MVQANPQILQ MLQELGKQNPQL+RLIQ+HQA+FL+LIN
Sbjct: 263 AGA-GNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLIN 322

Query: 301 EPLEGFEGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIER 360
           EP+EG E                           ++ +Q +  MP A+ VTP E++AIER
Sbjct: 323 EPVEGEE---------------------------NVMEQLEAAMPQAVTVTPEEREAIER 377

Query: 361 LEAMGFDRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           LE MGFDR  V+E F AC++NEELAANYLL+H  E+ED
Sbjct: 383 LEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377

[Close]

BLAST of MS004713 vs. ExPASy Swiss-Prot
Match: Q40742 (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 9.4e-84
Identity = 193/401 (48.13%), Postives = 247/401 (61.60%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           V  VK+ IE  QG+  YP  QQ+LIH GKVLKD+TTL ENKV  + FLV+ML +    G 
Sbjct: 23  VADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ----GK 82

Query: 61  AGSSSTQTTTNAPT-------TTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYI-FLCC 120
             SSS   T+ AP+       T P + ++  P AP  T P  VS      T      +  
Sbjct: 83  GSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAV 142

Query: 121 SAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYS 180
           S++ D YGQA SNLV+G+NLE TIQ I++MGGG WDR+ V  AL AA+NNPERAV+YLYS
Sbjct: 143 SSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYS 202

Query: 181 GIPETTEVAAPVARPPTSQP-------METGGATATPVSGAPNSSPLNMFPQESLGATAA 240
           G+PE  ++  P   PP+ QP         T  A  + +S  PN+SPL++FPQ    A+  
Sbjct: 203 GVPEQMDIPVP---PPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTD 262

Query: 241 GGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQ 300
             G   LG+L+ LRNN QF+ L S+VQANPQILQ +LQELGKQNPQ+L+LIQ++QAEFL 
Sbjct: 263 AAG---LGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLH 322

Query: 301 LINEPLEGFEGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQA 360
           LINEP EG +                           +L DQ  + MP  I VTP E +A
Sbjct: 323 LINEPAEGDD-------------------------EENLLDQFPEAMPQTIAVTPEENEA 382

Query: 361 IERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           I RLEAMGFDR  V++ F AC+++E+LAANYLL+H  E++D
Sbjct: 383 ILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388

[Close]

BLAST of MS004713 vs. ExPASy TrEMBL
Match: A0A6J1D9V5 (Ubiquitin receptor RAD23 OS=Momordica charantia OX=3673 GN=LOC111018382 PE=3 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 5.2e-178
Identity = 342/386 (88.60%), Postives = 346/386 (89.64%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS
Sbjct: 23  VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
           AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPP     +++ T        +AQIDTYG
Sbjct: 83  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPA---SRDVATS--DVPTTNAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 377

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEHAGEYED
Sbjct: 383 EAFLACDRNEELAANYLLEHAGEYED 377

[Close]

BLAST of MS004713 vs. ExPASy TrEMBL
Match: A0A1S3B8V4 (Ubiquitin receptor RAD23 OS=Cucumis melo OX=3656 GN=LOC103487042 PE=3 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 4.0e-162
Identity = 318/386 (82.38%), Postives = 326/386 (84.46%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPCGQQLLIHNGKVLKDETTL ENK++ DGFLVVMLSKSK  GS
Sbjct: 23  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTTN PTTTPT NSTS PEAPTQ   P  S        I      +AQIDTYG
Sbjct: 83  TGSSSTQTTTNVPTTTPTPNSTSIPEAPTQ---PAASRN----VAISDVPTANAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQP+E GGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTSQPIEAGGATAPPVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 374

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 383 EAFLACDRNEELAANYLLEHGGEFED 374

[Close]

BLAST of MS004713 vs. ExPASy TrEMBL
Match: A0A5A7UF49 (Ubiquitin receptor RAD23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1804G00110 PE=3 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 4.0e-162
Identity = 318/386 (82.38%), Postives = 326/386 (84.46%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPCGQQLLIHNGKVLKDETTL ENK++ DGFLVVMLSKSK  GS
Sbjct: 11  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 70

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTTN PTTTPT NSTS PEAPTQ   P  S        I      +AQIDTYG
Sbjct: 71  TGSSSTQTTTNVPTTTPTPNSTSIPEAPTQ---PAASRN----VAISDVPTANAQIDTYG 130

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 131 QAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 190

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPTSQP+E GGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 191 AAPVARPPTSQPIEAGGATAPPVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 250

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 251 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 310

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 311 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 362

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 371 EAFLACDRNEELAANYLLEHGGEFED 362

[Close]

BLAST of MS004713 vs. ExPASy TrEMBL
Match: A0A0A0LCV4 (Ubiquitin receptor RAD23 OS=Cucumis sativus OX=3659 GN=Csa_3G829030 PE=3 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 5.4e-159
Identity = 313/386 (81.09%), Postives = 322/386 (83.42%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIE+VQGKD+YPC QQLLIHNGKVLKDETTL ENK++ DGFLVVMLSKSK  GS
Sbjct: 23  VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
            GSSSTQTTT  PTTTPT NSTS PEAP Q   P  S        I      +AQIDTYG
Sbjct: 83  TGSSSTQTTTIVPTTTPTPNSTSIPEAPAQ---PAASRN----VAISDVPTANAQIDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYSGIPET EV
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEV 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPPT QP++ GGATA PVSG PNSSPLNMFPQESL A AAGGGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPTGQPIDAGGATAPPVSGGPNSSPLNMFPQESL-AAAAGGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI
Sbjct: 323 ----------------------DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 374

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 383 EAFLACDRNEELAANYLLEHGGEFED 374

[Close]

BLAST of MS004713 vs. ExPASy TrEMBL
Match: A0A6J1J0D2 (Ubiquitin receptor RAD23 OS=Cucurbita maxima OX=3661 GN=LOC111482316 PE=3 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.5e-156
Identity = 303/386 (78.50%), Postives = 319/386 (82.64%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           VLGVKKNIED QG D+YPCGQQLLIHNGKVLKD+TTL+ENKV+ DGFLVVMLSKSK  GS
Sbjct: 23  VLGVKKNIEDAQGTDSYPCGQQLLIHNGKVLKDDTTLSENKVTEDGFLVVMLSKSKAPGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
           +GSSSTQTTTN PTT PT NST  PEAP Q          ++ T        + Q+DTYG
Sbjct: 83  SGSSSTQTTTNVPTTIPTPNSTLIPEAPAQPAASRNVATSDVPT-------ANTQVDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPE  E+
Sbjct: 143 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPEAAEI 202

Query: 181 AAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFLRN 240
           AAPVARPP+SQP+ETGG TA P SG PNSSPLNMFPQESL A AA GGGGSLGSLEFLRN
Sbjct: 203 AAPVARPPSSQPIETGGVTAPPTSGGPNSSPLNMFPQESL-AAAAAGGGGSLGSLEFLRN 262

Query: 241 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQVFS 300
           NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG    
Sbjct: 263 NPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEG---- 322

Query: 301 SICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
                                 DLFDQP+QDMPHAINVTPAEQQAIERLEA+GFDR+QVI
Sbjct: 323 ----------------------DLFDQPEQDMPHAINVTPAEQQAIERLEALGFDREQVI 374

Query: 361 EAFLACDRNEELAANYLLEHAGEYED 387
           EAFLACDRNEELAANYLLEH GE+ED
Sbjct: 383 EAFLACDRNEELAANYLLEHGGEFED 374

[Close]

BLAST of MS004713 vs. TAIR 10
Match: AT1G79650.1 (Rad23 UV excision repair protein family )

HSP 1 Score: 444.9 bits (1143), Expect = 6.6e-125
Identity = 247/392 (63.01%), Postives = 295/392 (75.26%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L ENKV+ +GFLVVMLSKSK+ GS
Sbjct: 23  IMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQ------PPLVSYKKELYTHIYIFLCCSA 120
           AG +S QT++ +   + T++ST  P AP+ TQ       P+ + ++            +A
Sbjct: 83  AGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSSPVPASPIPAQEQP-----------AA 142

Query: 121 QIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGI 180
           Q DTYGQAAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYSGI
Sbjct: 143 QTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 202

Query: 181 PETTEVAAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGS 240
           P+T EVA PV   P +Q   +G A   P SG PNSSPL++FPQE    T A  G G LG+
Sbjct: 203 PQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQE----TVAAAGSGDLGT 262

Query: 241 LEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGF 300
           LEFLRNN QFQ LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+NEP EG 
Sbjct: 263 LEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGS 322

Query: 301 EGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGF 360
           +G+                         D+FDQP+Q+MPHAINVTPAEQ+AI+RLEAMGF
Sbjct: 323 DGE------------------------GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGF 371

Query: 361 DRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           DR  VIEAFLACDRNEELAANYLLE++G++ED
Sbjct: 383 DRALVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of MS004713 vs. TAIR 10
Match: AT1G79650.4 (Rad23 UV excision repair protein family )

HSP 1 Score: 444.5 bits (1142), Expect = 8.7e-125
Identity = 249/405 (61.48%), Postives = 296/405 (73.09%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L ENKV+ +GFLVVMLSKSK+ GS
Sbjct: 23  IMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQ-------PPLVSYKKELYTHIYIFL--- 120
           AG +S QT++ +   + T++ST  P AP+ TQ       P     +  +Y  ++ F    
Sbjct: 83  AGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSSPVPASPIPAQEQPAVYAFVFSFAGLA 142

Query: 121 ---------CCSAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYN 180
                       AQ DTYGQAAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYN
Sbjct: 143 FCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYN 202

Query: 181 NPERAVDYLYSGIPETTEVAAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLG 240
           NPERAVDYLYSGIP+T EVA PV   P +Q   +G A   P SG PNSSPL++FPQE   
Sbjct: 203 NPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQE--- 262

Query: 241 ATAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQA 300
            T A  G G LG+LEFLRNN QFQ LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QA
Sbjct: 263 -TVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQA 322

Query: 301 EFLQLINEPLEGFEGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPA 360
           EFLQL+NEP EG +G+                         D+FDQP+Q+MPHAINVTPA
Sbjct: 323 EFLQLVNEPYEGSDGE------------------------GDMFDQPEQEMPHAINVTPA 382

Query: 361 EQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           EQ+AI+RLEAMGFDR  VIEAFLACDRNEELAANYLLE++G++ED
Sbjct: 383 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 395

[Close]

BLAST of MS004713 vs. TAIR 10
Match: AT1G79650.2 (Rad23 UV excision repair protein family )

HSP 1 Score: 440.3 bits (1131), Expect = 1.6e-123
Identity = 248/394 (62.94%), Postives = 289/394 (73.35%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L ENKV+ +GFLVVMLSKSK+ GS
Sbjct: 23  IMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGS 82

Query: 61  AGSSSTQ--------TTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCC 120
           AG +S Q        T   AP+TT +S   ++P  P Q QP                   
Sbjct: 83  AGQASVQPVSATTSSTKPAAPSTTQSSPVPASP-IPAQEQP------------------- 142

Query: 121 SAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYS 180
           +AQ DTYGQAAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYS
Sbjct: 143 AAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYS 202

Query: 181 GIPETTEVAAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSL 240
           GIP+T EVA PV   P +Q   +G A   P SG PNSSPL++FPQE    T A  G G L
Sbjct: 203 GIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQE----TVAAAGSGDL 262

Query: 241 GSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLE 300
           G+LEFLRNN QFQ LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+NEP E
Sbjct: 263 GTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYE 322

Query: 301 GFEGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAM 360
           G +G+                         D+FDQP+Q+MPHAINVTPAEQ+AI+RLEAM
Sbjct: 323 GSDGE------------------------GDMFDQPEQEMPHAINVTPAEQEAIQRLEAM 365

Query: 361 GFDRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           GFDR  VIEAFLACDRNEELAANYLLE++G++ED
Sbjct: 383 GFDRALVIEAFLACDRNEELAANYLLENSGDFED 365

[Close]

BLAST of MS004713 vs. TAIR 10
Match: AT1G16190.1 (Rad23 UV excision repair protein family )

HSP 1 Score: 425.6 bits (1093), Expect = 4.2e-119
Identity = 245/388 (63.14%), Postives = 283/388 (72.94%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL ENKV+ +GFLVVMLSKSKT  S
Sbjct: 23  IMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQPPLVSYKKELYTHIYIFLCCSAQIDTYG 120
           AG SSTQ T+   TTT T +ST T  AP+ TQ   V                +AQ DTYG
Sbjct: 83  AGPSSTQPTS---TTTSTISST-TLAAPSTTQSIAVPASNSTPVQEQ----PTAQSDTYG 142

Query: 121 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGIPETTEV 180
           QAAS LVSG+++EQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYSGIPET  +
Sbjct: 143 QAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI 202

Query: 181 AAPVARPPTSQPMETGG--ATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGSLEFL 240
                 P T+      G   TA P SG PNSSPL++FPQE++   A    GG LG+LEFL
Sbjct: 203 ------PATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAA----GGDLGTLEFL 262

Query: 241 RNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGQV 300
           R N QFQ LRSMV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+NEP EG +G V
Sbjct: 263 RGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 322

Query: 301 FSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQ 360
                                   D+FDQPDQ+MPH++NVTP EQ++IERLEAMGFDR  
Sbjct: 323 ------------------------DIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAI 368

Query: 361 VIEAFLACDRNEELAANYLLEHAGEYED 387
           VIEAFL+CDRNEELAANYLLEH+ ++ED
Sbjct: 383 VIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]

BLAST of MS004713 vs. TAIR 10
Match: AT1G79650.3 (Rad23 UV excision repair protein family )

HSP 1 Score: 405.6 bits (1041), Expect = 4.5e-113
Identity = 232/392 (59.18%), Postives = 278/392 (70.92%), Query Frame = 0


Query: 1   VLGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSGDGFLVVMLSKSKTVGS 60
           ++ VKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L ENKV+ +GFLVVMLSKSK+ GS
Sbjct: 23  IMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGS 82

Query: 61  AGSSSTQTTTNAPTTTPTSNSTSTPEAPTQTQ------PPLVSYKKELYTHIYIFLCCSA 120
           AG +S QT++ +   + T++ST  P AP+ TQ       P+ + ++            +A
Sbjct: 83  AGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSSPVPASPIPAQEQP-----------AA 142

Query: 121 QIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSGI 180
           Q DTYGQAAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYSGI
Sbjct: 143 QTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 202

Query: 181 PETTEVAAPVARPPTSQPMETGGATATPVSGAPNSSPLNMFPQESLGATAAGGGGGSLGS 240
           P+T EVA PV   P +Q   +G A   P SG PNSSPL++FPQE    T A  G G LG+
Sbjct: 203 PQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQE----TVAAAGSGDLGT 262

Query: 241 LEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGF 300
           LEFLRNN                     QELGKQNPQLLRLIQ++QAEFLQL+NEP EG 
Sbjct: 263 LEFLRNND--------------------QELGKQNPQLLRLIQENQAEFLQLVNEPYEGS 322

Query: 301 EGQVFSSICCQCFIFVYRHVSEFFFSSRDLFDQPDQDMPHAINVTPAEQQAIERLEAMGF 360
           +G+                         D+FDQP+Q+MPHAINVTPAEQ+AI+RLEAMGF
Sbjct: 323 DGE------------------------GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGF 351

Query: 361 DRDQVIEAFLACDRNEELAANYLLEHAGEYED 387
           DR  VIEAFLACDRNEELAANYLLE++G++ED
Sbjct: 383 DRALVIEAFLACDRNEELAANYLLENSGDFED 351

The following BLAST results are available for this feature:

BLAST of MS004713 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150127.1	1.1e-177	88.60	ubiquitin receptor RAD23b-like [Momordica charantia]	[more]
KAA0053718.1	8.3e-162	82.38	ubiquitin receptor RAD23b-like [Cucumis melo var. makuwa] >TYK17740.1 ubiquitin ...	[more]
XP_008443453.1	8.3e-162	82.38	PREDICTED: ubiquitin receptor RAD23b-like [Cucumis melo] >XP_008443454.1 PREDICT...	[more]
XP_038905754.1	7.0e-161	82.64	ubiquitin receptor RAD23b-like [Benincasa hispida]	[more]
XP_004147454.1	1.1e-158	81.09	ubiquitin receptor RAD23b [Cucumis sativus] >KGN59613.1 hypothetical protein Csa...	[more]

BLAST of MS004713 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84L33	9.3e-124	63.01	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3	[more]
Q84L32	5.9e-118	63.14	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=...	[more]
Q84L31	5.5e-92	50.35	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2	[more]
Q84L30	1.0e-90	51.26	Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2	[more]
Q40742	9.4e-84	48.13	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RA...	[more]

BLAST of MS004713 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9V5	5.2e-178	88.60	Ubiquitin receptor RAD23 OS=Momordica charantia OX=3673 GN=LOC111018382 PE=3 SV=...	[more]
A0A1S3B8V4	4.0e-162	82.38	Ubiquitin receptor RAD23 OS=Cucumis melo OX=3656 GN=LOC103487042 PE=3 SV=1	[more]
A0A5A7UF49	4.0e-162	82.38	Ubiquitin receptor RAD23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LCV4	5.4e-159	81.09	Ubiquitin receptor RAD23 OS=Cucumis sativus OX=3659 GN=Csa_3G829030 PE=3 SV=1	[more]
A0A6J1J0D2	2.5e-156	78.50	Ubiquitin receptor RAD23 OS=Cucurbita maxima OX=3661 GN=LOC111482316 PE=3 SV=1	[more]

BLAST of MS004713 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79650.1	6.6e-125	63.01	Rad23 UV excision repair protein family	[more]
AT1G79650.4	8.7e-125	61.48	Rad23 UV excision repair protein family	[more]
AT1G79650.2	1.6e-123	62.94	Rad23 UV excision repair protein family	[more]
AT1G16190.1	4.2e-119	63.14	Rad23 UV excision repair protein family	[more]
AT1G79650.3	4.5e-113	59.18	Rad23 UV excision repair protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 262..282
None	No IPR available	GENE3D	1.10.8.10		coord: 333..381 e-value: 3.8E-24 score: 86.4
None	No IPR available	GENE3D	1.10.8.10		coord: 125..175 e-value: 5.9E-22 score: 79.3
None	No IPR available	GENE3D	3.10.20.90		coord: 1..58 e-value: 2.6E-14 score: 54.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..204
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 324..385
None	No IPR available	PANTHER	PTHR10621:SF32	UBIQUITIN RECEPTOR RAD23A-RELATED	coord: 324..385
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 2..298
None	No IPR available	PANTHER	PTHR10621:SF32	UBIQUITIN RECEPTOR RAD23A-RELATED	coord: 2..298
None	No IPR available	CDD	cd01805	Ubl_Rad23	coord: 1..52 e-value: 1.40044E-15 score: 69.123
None	No IPR available	CDD	cd14379	UBA1_Rad23_plant	coord: 126..175 e-value: 5.2639E-31 score: 110.394
IPR004806	UV excision repair protein Rad23	PRINTS	PR01839	RAD23PROTEIN	coord: 368..383 score: 62.22 coord: 261..283 score: 63.04 coord: 353..367 score: 58.18 coord: 336..352 score: 62.03
IPR004806	UV excision repair protein Rad23	TIGRFAM	TIGR00601	TIGR00601	coord: 2..384 e-value: 1.0E-112 score: 375.0
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 233..276 e-value: 1.3E-8 score: 44.6
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 132..172 e-value: 1.7E-5 score: 34.3 coord: 342..379 e-value: 3.7E-9 score: 46.4
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 132..170 e-value: 9.1E-15 score: 54.2 coord: 342..377 e-value: 5.6E-13 score: 48.5
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 340..380 score: 16.161459
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 130..173 score: 12.787865
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 1..54 e-value: 1.1E-7 score: 31.5
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..57 score: 11.659936
IPR015360	XPC-binding domain	PFAM	PF09280	XPC-binding	coord: 235..290 e-value: 4.2E-23 score: 80.8
IPR036353	XPC-binding domain superfamily	GENE3D	1.10.10.540		coord: 223..290 e-value: 8.0E-28 score: 97.8
IPR036353	XPC-binding domain superfamily	SUPERFAMILY	101238	XPC-binding domain	coord: 232..297
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..65
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 128..180
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 317..383

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004713.1	MS004713.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005515	protein binding