MS004705 (gene) Bitter gourd (TR) v1

Overview


Name	MS004705
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor MYB35
Location	scaffold741: 249437 .. 249826 (+)
RNA-Seq Expression	MS004705
Synteny	MS004705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGGATTGACCCAATAACCCACAAGCCATTCTCTCAGATCCTGTTCGACTATGGAACCATAAGCAGCAGCAGCAGCAGCACACCGAAACCCCCAATTCCGGCCTTCAACACAACAATGGCGAAACCCCATCAGCCATTTTCAGGGATCTTTCAAACGCCAATAAGACCACAGTTCTTCAATGAACCACCCACCTCCTCTTCCTCTTCCTCATCCACTTCATCTTCTTCCTTGTCGCAGAGCTCAGATGGGTTCGTTTTGGGGCATCGATCTGAAGGGTCGTCTTCTAATTCTTCGTCGTCTTTCAATTCGTTTGTGGATGCTCTGTTGGAGCAGGATTTCCAGATTAAGGGCTCGTTTCCAGAGATTTTGGAGGCCTGTTTTGATTAC

mRNA sequence

TTGGGGATTGACCCAATAACCCACAAGCCATTCTCTCAGATCCTGTTCGACTATGGAACCATAAGCAGCAGCAGCAGCAGCACACCGAAACCCCCAATTCCGGCCTTCAACACAACAATGGCGAAACCCCATCAGCCATTTTCAGGGATCTTTCAAACGCCAATAAGACCACAGTTCTTCAATGAACCACCCACCTCCTCTTCCTCTTCCTCATCCACTTCATCTTCTTCCTTGTCGCAGAGCTCAGATGGGTTCGTTTTGGGGCATCGATCTGAAGGGTCGTCTTCTAATTCTTCGTCGTCTTTCAATTCGTTTGTGGATGCTCTGTTGGAGCAGGATTTCCAGATTAAGGGCTCGTTTCCAGAGATTTTGGAGGCCTGTTTTGATTAC

Coding sequence (CDS)

TTGGGGATTGACCCAATAACCCACAAGCCATTCTCTCAGATCCTGTTCGACTATGGAACCATAAGCAGCAGCAGCAGCAGCACACCGAAACCCCCAATTCCGGCCTTCAACACAACAATGGCGAAACCCCATCAGCCATTTTCAGGGATCTTTCAAACGCCAATAAGACCACAGTTCTTCAATGAACCACCCACCTCCTCTTCCTCTTCCTCATCCACTTCATCTTCTTCCTTGTCGCAGAGCTCAGATGGGTTCGTTTTGGGGCATCGATCTGAAGGGTCGTCTTCTAATTCTTCGTCGTCTTTCAATTCGTTTGTGGATGCTCTGTTGGAGCAGGATTTCCAGATTAAGGGCTCGTTTCCAGAGATTTTGGAGGCCTGTTTTGATTAC

Protein sequence

LGIDPITHKPFSQILFDYGTISSSSSSTPKPPIPAFNTTMAKPHQPFSGIFQTPIRPQFFNEPPTSSSSSSSTSSSSLSQSSDGFVLGHRSEGSSSNSSSSFNSFVDALLEQDFQIKGSFPEILEACFDY

Homology

[Close]

BLAST of MS004705 vs. NCBI nr
Match: XP_022157667.1 (transcription factor MYB35 [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTI-SSSSSSTPKPPIPAFNTTMAKPHQPFSGIFQTPIRPQF 60
           LGIDPITHKPFSQILFDYGTI SSSSSSTPKPPIPAFNTTMAKPHQPFSGI QTPIRPQF
Sbjct: 119 LGIDPITHKPFSQILFDYGTISSSSSSSTPKPPIPAFNTTMAKPHQPFSGIXQTPIRPQF 178

Query: 61  FNEPPTSSSSSSSTSSSSLSQSSDGFVLGHRSEGSSSNSSSSFNSFVDALLEQDFQIKGS 120
           FNEPPTSSSSSSSTSSSSLSQSSDGFVLG RSEGSSSNSSSSFNSFVDALLEQDFQIKGS
Sbjct: 179 FNEPPTSSSSSSSTSSSSLSQSSDGFVLGQRSEGSSSNSSSSFNSFVDALLEQDFQIKGS 238

Query: 121 FPEILEACFDY 131
           FPEILEACFDY
Sbjct: 239 FPEILEACFDY 249

[Close]

BLAST of MS004705 vs. NCBI nr
Match: XP_022934424.1 (transcription factor MYB35-like [Cucurbita moschata] >XP_022983893.1 transcription factor MYB35-like [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 88/160 (55.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPI---------PAFNTTMAKPHQPFSG-- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKPP+         P   TTMAK  QPFS   
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLPATPKPPLIGPFNKTLNPTTTTTMAKTQQPFSSGA 178

Query: 61  ------IFQTPIRPQFFNEPPTSSSSSSST------------SSSSLSQSSDGF-VLGHR 120
                  FQTP +PQFFNE PT+SS SSS+            SSS  S+  +G      +
Sbjct: 179 YLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEGLFHFAASSSCCSEQRNGIEPFSQQ 238

Query: 121 SEGSSSNSSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
            EGSSS+  SSF+SFVDALL QD +IKGSFPEIL+ CFDY
Sbjct: 239 CEGSSSD--SSFDSFVDALLVQDCEIKGSFPEILDGCFDY 275

[Close]

BLAST of MS004705 vs. NCBI nr
Match: KAG6580990.1 (Transcription factor MYB35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26
Identity = 88/160 (55.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPI---------PAFNTTMAKPHQPFSG-- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPK P+         P   TTMAK  QPFS   
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLPATPKAPLIGPFNKTLNPTTTTTMAKTQQPFSSGA 178

Query: 61  ------IFQTPIRPQFFNEPPTSSSSSSST------------SSSSLSQSSDGF-VLGHR 120
                  FQTP +PQFFNE PT+SS SSS+            SSS  S+  +GF     +
Sbjct: 179 YLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEGLFHFAASSSCCSEQRNGFEPFSQQ 238

Query: 121 SEGSSSNSSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
            EGSSS+  SSF+SFVDALL QD +IKGSFPEIL+ CFDY
Sbjct: 239 CEGSSSD--SSFDSFVDALLVQDCEIKGSFPEILDGCFDY 275

[Close]

BLAST of MS004705 vs. NCBI nr
Match: XP_023526254.1 (transcription factor MYB35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.5 bits (319), Expect = 8.5e-26
Identity = 90/159 (56.60%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPP-IPAFN-------TTMAKPHQPFSG--- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKPP I  FN       TTMAK  QPFS    
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLPATPKPPLIGPFNKTLIPTTTTMAKTQQPFSSGAY 178

Query: 61  -----IFQTPIRPQFFNEPPTSSSSSSST------------SSSSLSQSSDGF-VLGHRS 120
                 FQTP +PQFFNE PT+SS SSS+            SSS  S+  +G      + 
Sbjct: 179 LGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEGLFHFAASSSCCSEQRNGIEPFSQQC 238

Query: 121 EGSSSNSSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
           EGSSS+  SSF+SFVDALL QD +IKGSFPEIL+ CFDY
Sbjct: 239 EGSSSD--SSFDSFVDALLVQDCEIKGSFPEILDGCFDY 274

[Close]

BLAST of MS004705 vs. NCBI nr
Match: XP_004147487.1 (transcription factor MYB35 [Cucumis sativus] >KAE8651233.1 hypothetical protein Csa_002409 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-25
Identity = 86/153 (56.21%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPIPAFN------TTMAKPHQPFSG----- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKP +  FN      TTMAK  QPFS      
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLQTTPKPLMGPFNKTLTPTTTMAKSQQPFSSGTNMG 178

Query: 61  ---IFQTPIRPQFFNEPPTSSSSSSSTSSSSLSQSSDGFVLGH---------RSEGSSSN 120
               FQTP +P    E PTSSS SSS+ + S +    G   GH         R EGSSS+
Sbjct: 179 EQFQFQTPKKPYILKEQPTSSSCSSSSINGSETMFHLGSSSGHSNGIEPNLQRCEGSSSD 238

Query: 121 SSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
              SF+SFVDALLEQDF+IKGSFPEIL+ CFDY
Sbjct: 239 --PSFDSFVDALLEQDFEIKGSFPEILDECFDY 268

[Close]

BLAST of MS004705 vs. ExPASy TrEMBL
Match: A0A6J1DV32 (transcription factor MYB35 OS=Momordica charantia OX=3673 GN=LOC111024322 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTI-SSSSSSTPKPPIPAFNTTMAKPHQPFSGIFQTPIRPQF 60
           LGIDPITHKPFSQILFDYGTI SSSSSSTPKPPIPAFNTTMAKPHQPFSGI QTPIRPQF
Sbjct: 119 LGIDPITHKPFSQILFDYGTISSSSSSSTPKPPIPAFNTTMAKPHQPFSGIXQTPIRPQF 178

Query: 61  FNEPPTSSSSSSSTSSSSLSQSSDGFVLGHRSEGSSSNSSSSFNSFVDALLEQDFQIKGS 120
           FNEPPTSSSSSSSTSSSSLSQSSDGFVLG RSEGSSSNSSSSFNSFVDALLEQDFQIKGS
Sbjct: 179 FNEPPTSSSSSSSTSSSSLSQSSDGFVLGQRSEGSSSNSSSSFNSFVDALLEQDFQIKGS 238

Query: 121 FPEILEACFDY 131
           FPEILEACFDY
Sbjct: 239 FPEILEACFDY 249

[Close]

BLAST of MS004705 vs. ExPASy TrEMBL
Match: A0A6J1J901 (transcription factor MYB35-like OS=Cucurbita maxima OX=3661 GN=LOC111482372 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 88/160 (55.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPI---------PAFNTTMAKPHQPFSG-- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKPP+         P   TTMAK  QPFS   
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLPATPKPPLIGPFNKTLNPTTTTTMAKTQQPFSSGA 178

Query: 61  ------IFQTPIRPQFFNEPPTSSSSSSST------------SSSSLSQSSDGF-VLGHR 120
                  FQTP +PQFFNE PT+SS SSS+            SSS  S+  +G      +
Sbjct: 179 YLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEGLFHFAASSSCCSEQRNGIEPFSQQ 238

Query: 121 SEGSSSNSSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
            EGSSS+  SSF+SFVDALL QD +IKGSFPEIL+ CFDY
Sbjct: 239 CEGSSSD--SSFDSFVDALLVQDCEIKGSFPEILDGCFDY 275

[Close]

BLAST of MS004705 vs. ExPASy TrEMBL
Match: A0A6J1F2J0 (transcription factor MYB35-like OS=Cucurbita moschata OX=3662 GN=LOC111441605 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 88/160 (55.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPI---------PAFNTTMAKPHQPFSG-- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKPP+         P   TTMAK  QPFS   
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLPATPKPPLIGPFNKTLNPTTTTTMAKTQQPFSSGA 178

Query: 61  ------IFQTPIRPQFFNEPPTSSSSSSST------------SSSSLSQSSDGF-VLGHR 120
                  FQTP +PQFFNE PT+SS SSS+            SSS  S+  +G      +
Sbjct: 179 YLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEGLFHFAASSSCCSEQRNGIEPFSQQ 238

Query: 121 SEGSSSNSSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
            EGSSS+  SSF+SFVDALL QD +IKGSFPEIL+ CFDY
Sbjct: 239 CEGSSSD--SSFDSFVDALLVQDCEIKGSFPEILDGCFDY 275

[Close]

BLAST of MS004705 vs. ExPASy TrEMBL
Match: A0A5D3D1E1 (Transcription factor MYB35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1804G00080 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 86/153 (56.21%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPIPAFN------TTMAKPHQPFSG----- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKP +  FN      TTMAK  QPFS      
Sbjct: 139 MGIDPITHKPFSQILFDYGSI-SSLRTTPKPLMSPFNKTLTPTTTMAKTQQPFSSGTNLG 198

Query: 61  ---IFQTPIRPQFFNEPPTSSSSSSSTSS--------SSLSQSSDGF-VLGHRSEGSSSN 120
               FQTP +P    E PTSSS SSS+ +        +  S+ S+G   +  R EGSSS+
Sbjct: 199 QQFQFQTPKKPYILKEQPTSSSCSSSSINGGETVFHLAGSSEQSNGIEPILQRCEGSSSD 258

Query: 121 SSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
             SSF+SFVDALLEQDF+IKGSFPEIL+ CFDY
Sbjct: 259 --SSFDSFVDALLEQDFEIKGSFPEILDECFDY 288

[Close]

BLAST of MS004705 vs. ExPASy TrEMBL
Match: A0A5A7UJQ3 (Transcription factor MYB35 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00970 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 86/153 (56.21%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 1   LGIDPITHKPFSQILFDYGTISSSSSSTPKPPIPAFN------TTMAKPHQPFSG----- 60
           +GIDPITHKPFSQILFDYG+I SS  +TPKP +  FN      TTMAK  QPFS      
Sbjct: 119 MGIDPITHKPFSQILFDYGSI-SSLRTTPKPLMSPFNKTLTPTTTMAKTQQPFSSGTNLG 178

Query: 61  ---IFQTPIRPQFFNEPPTSSSSSSSTSS--------SSLSQSSDGF-VLGHRSEGSSSN 120
               FQTP +P    E PTSSS SSS+ +        +  S+ S+G   +  R EGSSS+
Sbjct: 179 QQFQFQTPKKPYILKEQPTSSSCSSSSINGGETVFHLAGSSEQSNGIEPILQRCEGSSSD 238

Query: 121 SSSSFNSFVDALLEQDFQIKGSFPEILEACFDY 131
             SSF+SFVDALLEQDF+IKGSFPEIL+ CFDY
Sbjct: 239 --SSFDSFVDALLEQDFEIKGSFPEILDECFDY 268

The following BLAST results are available for this feature:

BLAST of MS004705 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157667.1	5.8e-59	97.71	transcription factor MYB35 [Momordica charantia]	[more]
XP_022934424.1	2.9e-26	55.00	transcription factor MYB35-like [Cucurbita moschata] >XP_022983893.1 transcripti...	[more]
KAG6580990.1	5.0e-26	55.00	Transcription factor MYB35, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023526254.1	8.5e-26	56.60	transcription factor MYB35-like [Cucurbita pepo subsp. pepo]	[more]
XP_004147487.1	2.5e-25	56.21	transcription factor MYB35 [Cucumis sativus] >KAE8651233.1 hypothetical protein ...	[more]

BLAST of MS004705 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DV32	2.8e-59	97.71	transcription factor MYB35 OS=Momordica charantia OX=3673 GN=LOC111024322 PE=4 S...	[more]
A0A6J1J901	1.4e-26	55.00	transcription factor MYB35-like OS=Cucurbita maxima OX=3661 GN=LOC111482372 PE=4...	[more]
A0A6J1F2J0	1.4e-26	55.00	transcription factor MYB35-like OS=Cucurbita moschata OX=3662 GN=LOC111441605 PE...	[more]
A0A5D3D1E1	2.7e-25	56.21	Transcription factor MYB35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UJQ3	2.7e-25	56.21	Transcription factor MYB35 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of MS004705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004705.1	MS004705.1	mRNA