MS004693 (gene) Bitter gourd (TR) v1

Overview


Name	MS004693
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold741: 73761 .. 73832 (+)
RNA-Seq Expression	MS004693
Synteny	MS004693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAGCCCAAGCAATCAAGAGGATCCCTCAAATCAAGTTTCCCAAACGCCATCCCAACCCCTCTGGT

mRNA sequence

ATGGGTGGAGCCCAAGCAATCAAGAGGATCCCTCAAATCAAGTTTCCCAAACGCCATCCCAACCCCTCTGGT

Coding sequence (CDS)

ATGGGTGGAGCCCAAGCAATCAAGAGGATCCCTCAAATCAAGTTTCCCAAACGCCATCCCAACCCCTCTGGT

Protein sequence

MGGAQAIKRIPQIKFPKRHPNPSG

Homology

[Close]

BLAST of MS004693 vs. NCBI nr
Match: XP_038875405.1 (uncharacterized protein LOC120067868 [Benincasa hispida])

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  MGGAQAIKRIPQIKFPKRHPNPSG 25
          MGGAQAIKRIP+IKFPKRHPNPSG
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSG 24

[Close]

BLAST of MS004693 vs. NCBI nr
Match: XP_022156457.1 (uncharacterized protein LOC111023342 [Momordica charantia])

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  MGGAQAIKRIPQIKFPKRHPNPSG 25
          MGGAQAIKRIP+IKFPKRHPNPSG
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSG 24

[Close]

BLAST of MS004693 vs. NCBI nr
Match: KAG7035504.1 (hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-04
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  MGGAQAIKRIPQIKFPKRHPNPSG 25
          MGGAQA+KRIP+IKFPKRHPNPSG
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSG 24

[Close]

BLAST of MS004693 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 hypothetical protein SDJN03_02911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-04
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  MGGAQAIKRIPQIKFPKRHPNPSG 25
          MGGAQA+KRIP+IKFPKRHPNPSG
Sbjct: 1  MGGAQALKRIPRIKFPKRHPNPSG 24

[Close]

BLAST of MS004693 vs. ExPASy TrEMBL
Match: A0A6J1DS43 (uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023342 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  MGGAQAIKRIPQIKFPKRHPNPSG 25
          MGGAQAIKRIP+IKFPKRHPNPSG
Sbjct: 1  MGGAQAIKRIPRIKFPKRHPNPSG 24

The following BLAST results are available for this feature:

BLAST of MS004693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875405.1	3.8e-04	95.83	uncharacterized protein LOC120067868 [Benincasa hispida]	[more]
XP_022156457.1	3.8e-04	95.83	uncharacterized protein LOC111023342 [Momordica charantia]	[more]
KAG7035504.1	6.4e-04	91.67	hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023534508.1	6.4e-04	91.67	uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 ...	[more]

BLAST of MS004693 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DS43	1.8e-04	95.83	uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of MS004693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004693.1	MS004693.1	mRNA