MS004646 (gene) Bitter gourd (TR) v1

Overview
NameMS004646
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold564: 230531 .. 230773 (-)
RNA-Seq ExpressionMS004646
SyntenyMS004646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAGTGTGTGGGATGTGTTGTGGCCGGTTCGGCTTCCTGTTCCTTGGTTCTCTCTACTTTGTTTCGATGGAAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGATGCGTGATCGACTTGTTACGTGGGATCGCTTATGCCATTGGTATTCTTCCGTTCCTGTTTCCTGTGTGTTTTGTGCTCACTTTGAGTCCCGAGATCATCTGTTCTTTGAGTACCCTTTTAGTTGGGAGGTCTGG

mRNA sequence

TCAAGTGTGTGGGATGTGTTGTGGCCGGTTCGGCTTCCTGTTCCTTGGTTCTCTCTACTTTGTTTCGATGGAAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGATGCGTGATCGACTTGTTACGTGGGATCGCTTATGCCATTGGTATTCTTCCGTTCCTGTTTCCTGTGTGTTTTGTGCTCACTTTGAGTCCCGAGATCATCTGTTCTTTGAGTACCCTTTTAGTTGGGAGGTCTGG

Coding sequence (CDS)

TCAAGTGTGTGGGATGTGTTGTGGCCGGTTCGGCTTCCTGTTCCTTGGTTCTCTCTACTTTGTTTCGATGGAAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGATGCGTGATCGACTTGTTACGTGGGATCGCTTATGCCATTGGTATTCTTCCGTTCCTGTTTCCTGTGTGTTTTGTGCTCACTTTGAGTCCCGAGATCATCTGTTCTTTGAGTACCCTTTTAGTTGGGAGGTCTGG

Protein sequence

SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW
Homology
BLAST of MS004646 vs. NCBI nr
Match: XP_022157473.1 (uncharacterized protein LOC111024165 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           S+  DVL PVR PVPWFSL+ F GNI KHSFIAWLAMRDRL T DRLC W  SV VSCVF
Sbjct: 195 SNALDVLRPVRPPVPWFSLVWFGGNIPKHSFIAWLAMRDRLATRDRLCRWDYSVMVSCVF 254

Query: 61  CAHFESRDHLFFEYPFSWEVW 82
           C   ES D+LFFE PFSWEVW
Sbjct: 255 CTGQESWDNLFFECPFSWEVW 275

BLAST of MS004646 vs. NCBI nr
Match: XP_022158861.1 (uncharacterized protein LOC111025324 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           SSVW +L P R PV +F LL F GNI KHSFI+WLA+RDRL T +RL  W + VP +CVF
Sbjct: 224 SSVWGILRPRRPPVSYFYLLWFGGNIPKHSFISWLAIRDRLFTRERLRQWNALVPATCVF 283

Query: 61  CAHFESRDHLFFEYPFSWEVW 82
           CA  ESRDHLF + P+S  VW
Sbjct: 284 CAGLESRDHLFLDCPYSRAVW 304

BLAST of MS004646 vs. NCBI nr
Match: XP_022149381.1 (uncharacterized protein LOC111017811 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           SS WDVL P +  VPWFS L F GNI KHSFIAWLA+RDRL T DRL  W SS+PVSCVF
Sbjct: 252 SSAWDVLRPTQPLVPWFSSLWFSGNISKHSFIAWLAVRDRLATLDRLRRWDSSIPVSCVF 311

Query: 61  CAHFES 67
           C  FES
Sbjct: 312 CVSFES 317

BLAST of MS004646 vs. NCBI nr
Match: XP_031737043.1 (uncharacterized protein LOC116402131 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           +S W+ + P    V W  LL   GNI KHSF AWLA+RDRL T DRL  W  S+P+SC+ 
Sbjct: 807 ASAWETIRPHSSRVGWSGLLWDRGNIPKHSFYAWLAIRDRLGTRDRLSQWDRSIPLSCML 866

Query: 61  C-AHFESRDHLFFEYPFSWEVW 82
           C  ++ESRDHLFF  PF WE+W
Sbjct: 867 CGGNYESRDHLFFSCPFGWEIW 888

BLAST of MS004646 vs. NCBI nr
Match: XP_031745548.1 (uncharacterized protein LOC116405965 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 7.6e-17
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           +S W+ + P  + V W  LL   GNI KHSF AWLA+RDRL T DRL  W  S+P+SC+ 
Sbjct: 88  TSAWETIRPHSIRVGWSGLLWGGGNIPKHSFCAWLAIRDRLGTRDRLSRWDRSIPLSCLL 147

Query: 61  C-AHFESRDHLFFEYPFSWEVW 82
           C  ++ESRDHLFF   F WE+W
Sbjct: 148 CGGNYESRDHLFFSCHFGWEIW 169

BLAST of MS004646 vs. ExPASy TrEMBL
Match: A0A6J1DTG0 (uncharacterized protein LOC111024165 OS=Momordica charantia OX=3673 GN=LOC111024165 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           S+  DVL PVR PVPWFSL+ F GNI KHSFIAWLAMRDRL T DRLC W  SV VSCVF
Sbjct: 195 SNALDVLRPVRPPVPWFSLVWFGGNIPKHSFIAWLAMRDRLATRDRLCRWDYSVMVSCVF 254

Query: 61  CAHFESRDHLFFEYPFSWEVW 82
           C   ES D+LFFE PFSWEVW
Sbjct: 255 CTGQESWDNLFFECPFSWEVW 275

BLAST of MS004646 vs. ExPASy TrEMBL
Match: A0A6J1E271 (uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025324 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.1e-20
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           SSVW +L P R PV +F LL F GNI KHSFI+WLA+RDRL T +RL  W + VP +CVF
Sbjct: 224 SSVWGILRPRRPPVSYFYLLWFGGNIPKHSFISWLAIRDRLFTRERLRQWNALVPATCVF 283

Query: 61  CAHFESRDHLFFEYPFSWEVW 82
           CA  ESRDHLF + P+S  VW
Sbjct: 284 CAGLESRDHLFLDCPYSRAVW 304

BLAST of MS004646 vs. ExPASy TrEMBL
Match: A0A6J1D875 (uncharacterized protein LOC111017811 OS=Momordica charantia OX=3673 GN=LOC111017811 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           SS WDVL P +  VPWFS L F GNI KHSFIAWLA+RDRL T DRL  W SS+PVSCVF
Sbjct: 252 SSAWDVLRPTQPLVPWFSSLWFSGNISKHSFIAWLAVRDRLATLDRLRRWDSSIPVSCVF 311

Query: 61  CAHFES 67
           C  FES
Sbjct: 312 CVSFES 317

BLAST of MS004646 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 1    SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
            +S W+ + P    V W  LL   GNI KHSF AWLA++DRL T DRL  W SS+P+SC+ 
Sbjct: 956  ASAWEAICPRGGRVLWDGLLWGGGNIPKHSFCAWLAIKDRLDTRDRLHRWDSSIPLSCIL 1015

Query: 61   C-AHFESRDHLFFEYPFSWEVW 82
            C    ESRDHLFF  PF  +VW
Sbjct: 1016 CQGGVESRDHLFFSCPFGGDVW 1037

BLAST of MS004646 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           +S W+ + P    V W  LL   GNI KHSF AWLA++DRL T DR   W SSVP+SC+ 
Sbjct: 851 ASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWLAIKDRLGTRDRFHRWDSSVPLSCIL 910

Query: 61  C-AHFESRDHLFFEYPFSWEVW 82
           C    ESRDHLFF  PF  +VW
Sbjct: 911 CEGGMESRDHLFFSCPFGGDVW 932

BLAST of MS004646 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-15
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 1   SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVF 60
           ++ W  L P+   V WF  + F G I KH+FIAW+ MR RL T DR+  W    P  C+F
Sbjct: 28  TATWLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLF 87

Query: 61  C-AHFESRDHLFFEYPFSWEVW 82
           C  H E+R HLFF+  F+ EVW
Sbjct: 88  CNTHDETRQHLFFDCEFAREVW 109

BLAST of MS004646 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-14
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 4   WDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-A 63
           W  L P    VPW   + F  ++ KH+FI W+   +RL T DRL +W  S+P  C+ C A
Sbjct: 117 WSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNA 176

Query: 64  HFESRDHLFFEYPFSWEVW 82
           H +SR HLFFE  FS  VW
Sbjct: 177 HDDSRAHLFFECQFSGVVW 195

BLAST of MS004646 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-13
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 7   LWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFE 66
           L P    VPW+  + F  ++ KH+FI W+   +RL T DRL  W  S+P  C+ C +H E
Sbjct: 142 LHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDE 201

Query: 67  SRDHLFFEYPFSWEVW 82
           SR HLFFE PF   VW
Sbjct: 202 SRAHLFFECPFCGAVW 217

BLAST of MS004646 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0

Query: 4   WDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAH 63
           W      +L V W+  + F     K+S +AW+A+++RL T DR+  W +    SCV C H
Sbjct: 272 WAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 331

Query: 64  F-ESRDHLFFEYPFSWEV 81
             E+RDHLFF  P+S EV
Sbjct: 332 LVETRDHLFFTCPYSAEV 349

BLAST of MS004646 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-05
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 0

Query: 38  RDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW 82
           R+RL   DR   W   VP  C+ C A  E+R H+FF+ PFS EVW
Sbjct: 264 RNRLHICDRFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVW 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157473.12.6e-2574.07uncharacterized protein LOC111024165 [Momordica charantia][more]
XP_022158861.11.3e-1961.73uncharacterized protein LOC111025324 [Momordica charantia][more]
XP_022149381.14.1e-1871.21uncharacterized protein LOC111017811 [Momordica charantia][more]
XP_031737043.12.6e-1754.88uncharacterized protein LOC116402131 [Cucumis sativus][more]
XP_031745548.17.6e-1753.66uncharacterized protein LOC116405965 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DTG01.3e-2574.07uncharacterized protein LOC111024165 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1E2716.1e-2061.73uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D8752.0e-1871.21uncharacterized protein LOC111017811 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5A7TZS05.9e-1553.66Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7UP651.3e-1453.66Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
Match NameE-valueIdentityDescription
AT2G02520.14.5e-1546.34RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G04650.11.7e-1445.57RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT1G43730.11.4e-1346.05RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT3G24255.16.0e-1241.03RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT1G45063.15.5e-0548.89copper ion binding;electron carriers [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..81
e-value: 3.7E-14
score: 53.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004646.1MS004646.1mRNA