MS004591 (gene) Bitter gourd (TR) v1

Overview


Name	MS004591
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein .
Location	scaffold995: 528589 .. 528885 (-)
RNA-Seq Expression	MS004591
Synteny	MS004591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTAGAAGCTTAAACTTGAGCTTTTATGTCTTTATCACTCTCATCATTCTTCTTCTTCGTTTCATTTCTATAACGTCACGGCCGCTACATGACATTCATCGGCCCGTAGTAGCGACGACCGCAATTGCGGTAAGCTCTTTTGACAAACGTCGTGCAAGAATACGGCCTCCTGCTCCAGCATCTTTGGCCTTCTCCATAAACCGATATAAATATGTTGAGATGGAAGCTTTTCGACCGACTTCGCCAGGGCACAGCCCTGGAGTCGGCCATAAGGAACCGCCAGGTTCGCCG

mRNA sequence

ATGGCTTGTAGAAGCTTAAACTTGAGCTTTTATGTCTTTATCACTCTCATCATTCTTCTTCTTCGTTTCATTTCTATAACGTCACGGCCGCTACATGACATTCATCGGCCCGTAGTAGCGACGACCGCAATTGCGGTAAGCTCTTTTGACAAACGTCGTGCAAGAATACGGCCTCCTGCTCCAGCATCTTTGGCCTTCTCCATAAACCGATATAAATATGTTGAGATGGAAGCTTTTCGACCGACTTCGCCAGGGCACAGCCCTGGAGTCGGCCATAAGGAACCGCCAGGTTCGCCG

Coding sequence (CDS)

ATGGCTTGTAGAAGCTTAAACTTGAGCTTTTATGTCTTTATCACTCTCATCATTCTTCTTCTTCGTTTCATTTCTATAACGTCACGGCCGCTACATGACATTCATCGGCCCGTAGTAGCGACGACCGCAATTGCGGTAAGCTCTTTTGACAAACGTCGTGCAAGAATACGGCCTCCTGCTCCAGCATCTTTGGCCTTCTCCATAAACCGATATAAATATGTTGAGATGGAAGCTTTTCGACCGACTTCGCCAGGGCACAGCCCTGGAGTCGGCCATAAGGAACCGCCAGGTTCGCCG

Protein sequence

MACRSLNLSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAPASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP

Homology

[Close]

BLAST of MS004591 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 8  LSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAPASLAFS 67
          L  +  + L++ LL F+S+TSRP HDI+ P +      V  F  R A I PPA  S  FS
Sbjct: 3  LRSFHLLALVVFLLYFLSVTSRPRHDIYSPAI------VVGFGNRHA-ITPPASMS-TFS 62

Query: 68 INRYKYVEMEAFRPTSPGHSPGVGHKEPPGS 99
          INRYKYVEM+AFRPTSPGHSPGVGHK+PPG+
Sbjct: 63 INRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 85

[Close]

BLAST of MS004591 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-15
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MACRSLNLSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPA 60
          MA R  +L F   + LI LLL  +S+TSRPLH I  P+ +  A+AV S       I PPA
Sbjct: 1  MAARR-SLHFINLLPLITLLLHSLSVTSRPLHGID-PLPSAAAMAVVS--AHCHAILPPA 60

Query: 61 PAS-LAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPG 98
          P S LAFSINRYKYVE +AFRPT+PGHSPGVGH +PPG
Sbjct: 61 PVSTLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPPG 94

[Close]

BLAST of MS004591 vs. NCBI nr
Match: OAY29952.1 (hypothetical protein MANES_15G184800v8 [Manihot esculenta])

HSP 1 Score: 70.9 bits (172), Expect = 7.2e-09
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 14  ITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAPASLAFSINRYKY 73
           + L+ L +      SR LH IH P           F  + +   P  P+ + + INRYKY
Sbjct: 15  VILLHLQMDLAEAASRQLH-IHPP----------PFPNKLSLRNPKPPSFILYGINRYKY 74

Query: 74  VEMEAFRPTSPGHSPGVGHKEPPGSP 100
            E EAFRPTSPGHSPGVGHK+PPG+P
Sbjct: 75  TESEAFRPTSPGHSPGVGHKDPPGAP 89

[Close]

BLAST of MS004591 vs. NCBI nr
Match: KAF5725791.1 (hypothetical protein HS088_TW23G00520 [Tripterygium wilfordii])

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 46/104 (44.23%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 1   MACRSLNLSFYVFITLIILLLRFISITSRPLH-----DIHRPVVATTAIAVSSFDKRRAR 60
           MA +S  L FYV + L+     F++   RPL+      +H P      ++ SS       
Sbjct: 1   MAPKSFILCFYVILFLLHSHCDFVA-AKRPLNMQLPKSVHPPPPVKPGVSDSS------E 60

Query: 61  IRPPAPASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP 100
            RPP+       INRYK+ E EAFRPTSPGHSPGVGHKEPP +P
Sbjct: 61  QRPPSIDRYYSRINRYKFTEAEAFRPTSPGHSPGVGHKEPPSAP 97

[Close]

BLAST of MS004591 vs. NCBI nr
Match: EXC31035.1 (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-08
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 2  ACRSLNLSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAP 61
          A R+  LS Y+ + L++  + F S +SRPLH +H PV         S        +P  P
Sbjct: 4  ATRTSLLSLYMAVLLLLHSIGFTS-SSRPLHVVHPPVNVLGGPPYKS--------KPRPP 63

Query: 62 ASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPP 97
          ++  FS+N YK  E +AFRPT+PGHSPGVGH  PP
Sbjct: 64 STKWFSVNHYKIAETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of MS004591 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.8e-05
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 58  PPAPASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP 100
           PP      F IN YK +E  AFRPT  G S G+GHK+PPG+P
Sbjct: 51  PPKDDFEWFEINIYKNIEQTAFRPTGQGPSQGIGHKDPPGAP 92

[Close]

BLAST of MS004591 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-04
Identity = 33/99 (33.33%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 5   SLNLSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAPASL 64
           S+ + F   I L+++ + F +  +      H PVV+ +               PP P   
Sbjct: 7   SITVLFRFLIVLLVIQVHFENTKAAR----HAPVVSWS---------------PPEPPKD 66

Query: 65  AF----SINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP 100
            F     INR+K +E +AFRPT  G S G+GHK PPG+P
Sbjct: 67  DFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

[Close]

BLAST of MS004591 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 57/105 (54.29%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MACRSLNL-SFYVFITLIILLLRFISI---TSRPLHDIHRPVVATTAIAVSSFDKRRARI 60
           MA RSL+L SF+  + L++LLL   S+   +SRPLH IH                    I
Sbjct: 1   MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIH--------------PHNPHAI 60

Query: 61  RPPAPASL--AFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP 100
            PPAP SL  +FSINRYKYVE +AFRPTSPGHSPGVGH EPPG P
Sbjct: 61  TPPAPVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

[Close]

BLAST of MS004591 vs. ExPASy TrEMBL
Match: A0A2C9UJ23 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-09
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 14  ITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAPASLAFSINRYKY 73
           + L+ L +      SR LH IH P           F  + +   P  P+ + + INRYKY
Sbjct: 15  VILLHLQMDLAEAASRQLH-IHPP----------PFPNKLSLRNPKPPSFILYGINRYKY 74

Query: 74  VEMEAFRPTSPGHSPGVGHKEPPGSP 100
            E EAFRPTSPGHSPGVGHK+PPG+P
Sbjct: 75  TESEAFRPTSPGHSPGVGHKDPPGAP 89

[Close]

BLAST of MS004591 vs. ExPASy TrEMBL
Match: A0A7J7BV90 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00520 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 46/104 (44.23%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 1   MACRSLNLSFYVFITLIILLLRFISITSRPLH-----DIHRPVVATTAIAVSSFDKRRAR 60
           MA +S  L FYV + L+     F++   RPL+      +H P      ++ SS       
Sbjct: 1   MAPKSFILCFYVILFLLHSHCDFVA-AKRPLNMQLPKSVHPPPPVKPGVSDSS------E 60

Query: 61  IRPPAPASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP 100
            RPP+       INRYK+ E EAFRPTSPGHSPGVGHKEPP +P
Sbjct: 61  QRPPSIDRYYSRINRYKFTEAEAFRPTSPGHSPGVGHKEPPSAP 97

[Close]

BLAST of MS004591 vs. ExPASy TrEMBL
Match: A0A7N2N0V5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1  MACRSLNLSFYVFITLIILLLRFISI-TSRPLHDIHRPVVATTAIAVSSFDKRRARIRPP 60
          MA R+  L+F   + +++L   F SI  SRP   IH P +  + ++            P 
Sbjct: 1  MAIRTFMLTF--LMVILLLQRNFGSIAASRPAGTIHPPAIPRSYLS-----------SPK 60

Query: 61 APASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPPGS 99
          AP +++F+INRYK VE EAFRPT+PGHSPGVGH  PP +
Sbjct: 61 APPTVSFTINRYKMVETEAFRPTTPGHSPGVGHDTPPAA 86

[Close]

BLAST of MS004591 vs. ExPASy TrEMBL
Match: W9S854 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 2  ACRSLNLSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAP 61
          A R+  LS Y+ + L++  + F S +SRPLH +H PV         S        +P  P
Sbjct: 4  ATRTSLLSLYMAVLLLLHSIGFTS-SSRPLHVVHPPVNVLGGPPYKS--------KPRPP 63

Query: 62 ASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPP 97
          ++  FS+N YK  E +AFRPT+PGHSPGVGH  PP
Sbjct: 64 STKWFSVNHYKIAETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of MS004591 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 33/99 (33.33%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 5   SLNLSFYVFITLIILLLRFISITSRPLHDIHRPVVATTAIAVSSFDKRRARIRPPAPASL 64
           S+ + F   I L+++ + F +  +      H PVV+ +               PP P   
Sbjct: 7   SITVLFRFLIVLLVIQVHFENTKAAR----HAPVVSWS---------------PPEPPKD 66

Query: 65  AF----SINRYKYVEMEAFRPTSPGHSPGVGHKEPPGSP 100
            F     INR+K +E +AFRPT  G S G+GHK PPG+P
Sbjct: 67  DFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

[Close]

BLAST of MS004591 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 44.7 bits (104), Expect = 5.1e-05
Identity = 21/39 (53.85%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 58 PPAPASLAFSINRYKYVEMEAFRPTSPGHSPGVGHKEPP 97
          PP      F IN YK +E  AFRPT  G S G+GHK+PP
Sbjct: 51 PPKDDFEWFEINIYKNIEQTAFRPTGQGPSQGIGHKDPP 89

The following BLAST results are available for this feature:

BLAST of MS004591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608019.1	2.7e-16	58.24	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591857.1	3.9e-15	59.18	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
OAY29952.1	7.2e-09	46.51	hypothetical protein MANES_15G184800v8 [Manihot esculenta]	[more]
KAF5725791.1	2.7e-08	44.23	hypothetical protein HS088_TW23G00520 [Tripterygium wilfordii]	[more]
EXC31035.1	4.6e-08	43.16	hypothetical protein L484_021337 [Morus notabilis]	[more]

BLAST of MS004591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN99	3.8e-05	54.76	Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1	[more]
Q3EBM6	4.2e-04	33.33	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of MS004591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	2.1e-14	54.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
A0A2C9UJ23	3.5e-09	46.51	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=...	[more]
A0A7J7BV90	1.3e-08	44.23	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00520 ...	[more]
A0A7N2N0V5	1.3e-08	43.43	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
W9S854	2.3e-08	43.16	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1	[more]

BLAST of MS004591 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35612.1	3.0e-05	33.33	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G31670.1	5.1e-05	53.85	Copper amine oxidase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..99
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 9..97
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 9..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004591.1	MS004591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development