MS004499 (gene) Bitter gourd (TR) v1

Overview
NameMS004499
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold1189: 104867 .. 105115 (+)
RNA-Seq ExpressionMS004499
SyntenyMS004499
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATGTGCCCTTGCTGTCATGCCTCTATTGAGACTGAACTCCATGCTCTCTTTGATTGTAATCGAGCTCGGAATATCTGGAACCTTGCACTTCCTACTGCCGCTCTTCCTCTCCTATTGAATTTAAGCTTCTCGGATCATTGGGAAGTTTTATTACAATCCTTGAACAAGGAGGAGATCGAATTAGCAGCAATTATCTGTTGGTCGATGTGGAATGATAGAAACACCTTAAACCAACAAAAACTGATC

mRNA sequence

CCCATGTGCCCTTGCTGTCATGCCTCTATTGAGACTGAACTCCATGCTCTCTTTGATTGTAATCGAGCTCGGAATATCTGGAACCTTGCACTTCCTACTGCCGCTCTTCCTCTCCTATTGAATTTAAGCTTCTCGGATCATTGGGAAGTTTTATTACAATCCTTGAACAAGGAGGAGATCGAATTAGCAGCAATTATCTGTTGGTCGATGTGGAATGATAGAAACACCTTAAACCAACAAAAACTGATC

Coding sequence (CDS)

CCCATGTGCCCTTGCTGTCATGCCTCTATTGAGACTGAACTCCATGCTCTCTTTGATTGTAATCGAGCTCGGAATATCTGGAACCTTGCACTTCCTACTGCCGCTCTTCCTCTCCTATTGAATTTAAGCTTCTCGGATCATTGGGAAGTTTTATTACAATCCTTGAACAAGGAGGAGATCGAATTAGCAGCAATTATCTGTTGGTCGATGTGGAATGATAGAAACACCTTAAACCAACAAAAACTGATC

Protein sequence

PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI
Homology
BLAST of MS004499 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P C  C   IET  HALF C RA+ +WN+ LP A      N S  D    L++SL+  + 
Sbjct: 26  PNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDF 85

Query: 61  ELAAIICWSMWNDRNTLNQQKLI 84
           +L  +  W++WNDRN +  Q+ I
Sbjct: 86  DLVGVGVWAIWNDRNAIRMQRQI 108

BLAST of MS004499 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-08
Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 0

Query: 1    PMCPCCHASIETELHALFDCNRARNIWNLALP-TAALPLLLNLSFSDHWEVLLQSLNKEE 60
            P C  C    E+ +HA F C RAR IW    P    L    N+SF + W  L + L  ++
Sbjct: 1171 PACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKD 1230

Query: 61   IELAAIICWSMWNDRNTLNQQKLI 84
            + LAAI  W +WNDRN+L   K +
Sbjct: 1231 LNLAAITGWGIWNDRNSLIHGKQV 1254

BLAST of MS004499 vs. NCBI nr
Match: XP_006471930.1 (uncharacterized protein LOC102617744 [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 1  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
          P CP CH S+ET  HALF+C  AR  WNLA  T  L  +       + + L  +  + E 
Sbjct: 15 PTCPRCHKSVETISHALFECKAARKTWNLAPSTFELQNVPGQDIFSYAQNLCSNSRRNEA 74

Query: 61 ELAAIICWSMWNDRNTL 78
          EL  + CW++W  RN L
Sbjct: 75 ELMIMYCWAIWFARNKL 91

BLAST of MS004499 vs. NCBI nr
Match: XP_042969075.1 (uncharacterized protein LOC122301758 [Carya illinoinensis])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 26/77 (33.77%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P+CP CH   E+ +HAL+ CN  +++W ++L      +++  SF + W +L+  L+ EE+
Sbjct: 58  PLCPICHQEPESVMHALWSCNSVQDVWGVSLRKLQKGVVMENSFKELWTLLIADLDSEEL 117

Query: 61  ELAAIICWSMWNDRNTL 78
           E  A   + +W  RN+L
Sbjct: 118 EEFAATVYQIWKRRNSL 134

BLAST of MS004499 vs. NCBI nr
Match: XP_030505004.1 (uncharacterized protein LOC115719975 [Cannabis sativa])

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-07
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P+CP C    ET  HAL DC+R+R +W  +   A      +L   + +  LLQSL+K +I
Sbjct: 422 PLCPVCKMENETIKHALLDCSRSRKVWRYSRFAAYYDAFKHLGIDEFFLGLLQSLDKNDI 481

Query: 61  ELAAIICWSMWNDRN--TLNQQKL 83
            +     W++WN RN   LNQ  +
Sbjct: 482 GIMFCFIWALWNQRNNFVLNQHTI 505

BLAST of MS004499 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P C  C   IET  HALF C RA+ +WN+ LP A      N S  D    L++SL+  + 
Sbjct: 26  PNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQDGLLYLVESLSTPDF 85

Query: 61  ELAAIICWSMWNDRNTLNQQKLI 84
           +L  +  W++WNDRN +  Q+ I
Sbjct: 86  DLVGVGVWAIWNDRNAIRMQRQI 108

BLAST of MS004499 vs. ExPASy TrEMBL
Match: A0A2N9EY21 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11528 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P+CP C +  ET +HAL+ C  ARN+W L         +  + F    + L QSLN++E+
Sbjct: 833 PLCPVCQSDSETVIHALWACPHARNVWALIPGRIQKLHVATIEFFLLTQNLTQSLNRQEL 892

Query: 61  ELAAIICWSMWNDRN 76
           EL A+ CWS+WN RN
Sbjct: 893 ELWAVTCWSIWNARN 907

BLAST of MS004499 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 0

Query: 1    PMCPCCHASIETELHALFDCNRARNIWNLALP-TAALPLLLNLSFSDHWEVLLQSLNKEE 60
            P C  C    E+ +HA F C RAR IW    P    L    N+SF + W  L + L  ++
Sbjct: 1171 PACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKD 1230

Query: 61   IELAAIICWSMWNDRNTLNQQKLI 84
            + LAAI  W +WNDRN+L   K +
Sbjct: 1231 LNLAAITGWGIWNDRNSLIHGKQV 1254

BLAST of MS004499 vs. ExPASy TrEMBL
Match: A0A803PZ76 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P+CP C    ET  HAL DC+R+R +W  +   A      +L   + +  LLQSL+K +I
Sbjct: 449 PLCPVCKMENETIKHALLDCSRSRKVWRYSRFAAYYDAFKHLGIDEFFLGLLQSLDKNDI 508

Query: 61  ELAAIICWSMWNDRN--TLNQQKL 83
            +     W++WN RN   LNQ  +
Sbjct: 509 GIMFCFIWALWNQRNNFVLNQHTI 532

BLAST of MS004499 vs. ExPASy TrEMBL
Match: A0A7J6HXN5 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.9e-07
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0

Query: 1   PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEI 60
           P C  C++  ET  HALF C RA+++W L+      P L   S +D    L  +L+  + 
Sbjct: 144 PYCSICNSCEETINHALFYCPRAKSVWELSNLRINFPTLGQSSGADILLQLSSTLSTPDF 203

Query: 61  ELAAIICWSMWNDRNTLN 79
           EL  ++CWS+W++RN +N
Sbjct: 204 ELFLVLCWSIWHERNDIN 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145060.13.5e-0939.76uncharacterized protein LOC111014578 [Momordica charantia][more]
XP_022158377.15.1e-0839.29uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_006471930.11.1e-0740.26uncharacterized protein LOC102617744 [Citrus sinensis][more]
XP_042969075.11.1e-0733.77uncharacterized protein LOC122301758 [Carya illinoinensis][more]
XP_030505004.13.3e-0736.90uncharacterized protein LOC115719975 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CTE31.7e-0939.76uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A2N9EY213.8e-0942.67Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A6J1DX302.5e-0839.29uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803PZ761.6e-0736.90Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6HXN57.9e-0737.18zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004499.1MS004499.1mRNA