MS004368 (gene) Bitter gourd (TR) v1

Overview


Name	MS004368
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	elongator complex protein 6
Location	scaffold92: 2316560 .. 2318897 (-)
RNA-Seq Expression	MS004368
Synteny	MS004368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGAATGGCTTCGAATTTGCTTGATGAAGCTCTAGGTCTCGATGATCCGGCCAAGCCTTCGCCTCTGATTGGTCGCCTGTTGCTCGTCGAGGACTGCGTCGAAACCAGCGGTGCTTTCCTTCTTCATCACCTTCTCAAGCGCTCTCTTTCGTCTCCTCAATCATCCAATGCCGTTATCTTCATCGCATTCTCTCTGTCCTTCGCCCACTACGATCGTGTGCTTCGGAAATTGGTACGCTCTCGCTATCGCTGTATGTGATGTTTATAGTTTAGGTTTTGGCGGCGTAACTTATGTTAATTGTCGTTTGAGTTGCTATTGTTTTTTTTTTGACTTGGTTGTCGGTGAGAGGAACAATGGTGGAAACTTAGAAGATTGTATCACTGGACTAACAGATTAGCTTCAGTTCCTCGGCGTTGTTATCAGTGTTGACAACTTAAACGAGTTTTAAGAAATTACATGATTATGATATGCTCAGAAAACTTGTTAATGGGTGATTGACGGGCATTCTTTTTAGTTTCTAGTGCACTGCGTTTGTGAAATTATTGGATGATATACTGGCTTTAGTGGCGTGTTCTGGTTTTGAATAAAGATTTTGATGTAATAGTAATTTAGCTAGTTGGGGAGTTTGAGATTCTTTCGAAATATTTGGCAGTAGGTGCAAGTAAACCATCATTTTTTTAAATTCTAGTGTTGAAAATAATAATCTGGCTGGTGGGTCTCTCTTCTCGTTCATCTGCATATATGATTCGATAGGATTCTGTCAATTAATTACAGTAATTAAGTGTTCAAAATGAGATGTATTCATTTGCAGAACTATTTTCTATTCAGGGCTGTAACTTAGTTGCTCAAAGGGACAGCGGTAGGTTCATTTTCTTTGACATGCTAACGCTGGGCTGTTCAGGTGAGAAAACCAGGTATACTATCCTCATTAAAGCTTTTAATCTTTTTCTCCCCTCCCCTTTCTTCAAACTAGTGCAGTTTATTTTTCGGTTTCTGTATAAAATAGAAAACAGTGCACTTCTTATCTTTTTGAATTCATTGTGTTGTTATCCTTTTCATTATGTGTTCTTCATAATATCAAATCCTTGATATGAGACGAATTTTTCTGTTACCAGATAGAAGCGGAAAGGAAACTGATGAAGGAGTTCTTGTTGGTCTGTACTGCAAAATTCAGAGAGCTGTGAATGCCTTAATTCAACAGAACAAAAAGCATGTCACCATTGTGATAGATGACATACCTCTTTTGGAGGTTGCTGCAAATGGCTCTTCAAATCATGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGTAAGACTCCGAAAGCTAACTGAATTATTCTCTTCTTCACATATCTTATATCCCTTGTCATTTCCATCTCCAGTGTTCATACTTTGCTCTTGCCACAGGGTTGTTCCTTAATTGCACTTAATCACGAAGATGTGTACATGGACACTGAGAGGCCACGGATTCTACAGATGGAGTACCTTGCTGATGTTTTGATAAAAGTAGGACCACTAGCCACTGGTATAGCAAAGGACGTTCATGGGCAGGTGCCATTTCTTGTTTTTATTACTTTCACATTTACCTGTTTGTTTTCTACTTCTACGGTTTTATATTTTTAAGGTTACGTTTGAAATTTTCCCTCTACATCTTTTCCTTGGTCGAGAATTGTGCAACAACTTTAAAAAACTCGTCCTGATCTTTTTTTAGTTTAGCATACGGGATAGGGATTCAAATCTCCGACCTTTTGATTGATGATATATGTCTTAACTAGTTGAACATAGCTCAGGTTGGCAACTCTTCCTGATTTTAGTTCACATATAATTTTCTTCATACTTGTGACAAAATTTGTTAGGGGCTGTTGACGACATTATTGTCTCAATAATGTCATTGTATGGTGTAAGTAGAGATGTCAATTCTTGTGTATTCTGCAAGCAAGATAACTATCTTAGAAGAATAGTTTTTCTTTTGATAAGAGACTTTCTTGACCCCGCCTTCATTGGTTCTCTCCATGTAACTGTGCTTGTACACAATGGCTGTTCTAGATGTAACTTTAATCTATATACAATATTCGAGTTTAAGATACGATGCGAATATGGTTTTAAATATTGTGTTATGCTGGTGATCATACTATTTTCTCTTTGCCGTTTGTATTGAATGTATACAAATTTGCTGCTGGCAATCATTTTCTTTCTGCAGTTGACAGTTCTGAACAAACCAGTCGGAGGCCTGCAAGACAACTTGAGAAACAGAGTGCACAATTTTCAGTTTTACATCAAGGAAAATGGTACTGAATTCTTTTATTCTGGAAGCAGAACT

mRNA sequence

ATGGACCGAATGGCTTCGAATTTGCTTGATGAAGCTCTAGGTCTCGATGATCCGGCCAAGCCTTCGCCTCTGATTGGTCGCCTGTTGCTCGTCGAGGACTGCGTCGAAACCAGCGGTGCTTTCCTTCTTCATCACCTTCTCAAGCGCTCTCTTTCGTCTCCTCAATCATCCAATGCCGTTATCTTCATCGCATTCTCTCTGTCCTTCGCCCACTACGATCGTGTGCTTCGGAAATTGGGCTGTAACTTAGTTGCTCAAAGGGACAGCGGTAGGTTCATTTTCTTTGACATGCTAACGCTGGGCTGTTCAGATAGAAGCGGAAAGGAAACTGATGAAGGAGTTCTTGTTGGTCTGTACTGCAAAATTCAGAGAGCTGTGAATGCCTTAATTCAACAGAACAAAAAGCATGTCACCATTGTGATAGATGACATACCTCTTTTGGAGGTTGCTGCAAATGGCTCTTCAAATCATGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGGTTGTTCCTTAATTGCACTTAATCACGAAGATGTGTACATGGACACTGAGAGGCCACGGATTCTACAGATGGAGTACCTTGCTGATGTTTTGATAAAAGTAGGACCACTAGCCACTGGTATAGCAAAGGACGTTCATGGGCAGTTGACAGTTCTGAACAAACCAGTCGGAGGCCTGCAAGACAACTTGAGAAACAGAGTGCACAATTTTCAGTTTTACATCAAGGAAAATGGTACTGAATTCTTTTATTCTGGAAGCAGAACT

Coding sequence (CDS)

ATGGACCGAATGGCTTCGAATTTGCTTGATGAAGCTCTAGGTCTCGATGATCCGGCCAAGCCTTCGCCTCTGATTGGTCGCCTGTTGCTCGTCGAGGACTGCGTCGAAACCAGCGGTGCTTTCCTTCTTCATCACCTTCTCAAGCGCTCTCTTTCGTCTCCTCAATCATCCAATGCCGTTATCTTCATCGCATTCTCTCTGTCCTTCGCCCACTACGATCGTGTGCTTCGGAAATTGGGCTGTAACTTAGTTGCTCAAAGGGACAGCGGTAGGTTCATTTTCTTTGACATGCTAACGCTGGGCTGTTCAGATAGAAGCGGAAAGGAAACTGATGAAGGAGTTCTTGTTGGTCTGTACTGCAAAATTCAGAGAGCTGTGAATGCCTTAATTCAACAGAACAAAAAGCATGTCACCATTGTGATAGATGACATACCTCTTTTGGAGGTTGCTGCAAATGGCTCTTCAAATCATGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGGTTGTTCCTTAATTGCACTTAATCACGAAGATGTGTACATGGACACTGAGAGGCCACGGATTCTACAGATGGAGTACCTTGCTGATGTTTTGATAAAAGTAGGACCACTAGCCACTGGTATAGCAAAGGACGTTCATGGGCAGTTGACAGTTCTGAACAAACCAGTCGGAGGCCTGCAAGACAACTTGAGAAACAGAGTGCACAATTTTCAGTTTTACATCAAGGAAAATGGTACTGAATTCTTTTATTCTGGAAGCAGAACT

Protein sequence

MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAVIFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYCKIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALNHEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVHNFQFYIKENGTEFFYSGSRT

Homology

[Close]

BLAST of MS004368 vs. NCBI nr
Match: XP_022139240.1 (elongator complex protein 6 [Momordica charantia])

HSP 1 Score: 516.2 bits (1328), Expect = 1.7e-142
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           MDRMASN+LDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV
Sbjct: 1   MDRMASNMLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IFIAFS  FAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFIAFSQXFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN
Sbjct: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRV 
Sbjct: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVR 240

Query: 241 NFQFYIKENGTEFFYSGSRT 261
           NFQFYIKENGTEFFYSGSRT
Sbjct: 241 NFQFYIKENGTEFFYSGSRT 260

[Close]

BLAST of MS004368 vs. NCBI nr
Match: XP_038893352.1 (elongator complex protein 6 [Benincasa hispida])

HSP 1 Score: 477.2 bits (1227), Expect = 8.7e-131
Identity = 232/259 (89.58%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           M+RM SNLLDEA+G DDP KPSPLIGR+LLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MNRMTSNLLDEAIGFDDPTKPSPLIGRMLLVEDCVETSGAFVLHHLLKRAFSSPHSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IFIAFS SF HYDRVLRKLGCNL AQRDSGRFIFFDMLTLGCSDRSGKE+ EGVLVGLYC
Sbjct: 61  IFIAFSQSFVHYDRVLRKLGCNLAAQRDSGRFIFFDMLTLGCSDRSGKESGEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAVNALIQ+NK+HVTI+IDDIPLLEVAANGSS HVLDFLHYCHTLTSEIGCS+IALN
Sbjct: 121 KIQRAVNALIQENKRHVTIMIDDIPLLEVAANGSSTHVLDFLHYCHTLTSEIGCSIIALN 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVY+D ERP ILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPV GLQD LRNRVH
Sbjct: 181 HEDVYVDIERPLILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVEGLQDKLRNRVH 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NF FYIKENGTEFFYSGS+
Sbjct: 241 NFHFYIKENGTEFFYSGSK 259

[Close]

BLAST of MS004368 vs. NCBI nr
Match: XP_023533346.1 (elongator complex protein 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 470.3 bits (1209), Expect = 1.1e-128
Identity = 230/259 (88.80%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           M RM SNLLDEA+GLDD    SPL+GRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MSRMTSNLLDEAIGLDDSTSLSPLVGRLLLVEDCVETSGAFVLHHLLKRAFSSPHSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IFIAFS SF HYDRVLRKLGCNL AQRDS RF F DMLT+GCSDRSGKET EGVLVGLYC
Sbjct: 61  IFIAFSQSFVHYDRVLRKLGCNLAAQRDSHRFFFLDMLTVGCSDRSGKETGEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NK+HVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCS+IAL+
Sbjct: 121 KIQRAVSALIQENKRHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSIIALS 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVY+D ERP ILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQ+NLRNRVH
Sbjct: 181 HEDVYLDIERPLILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQENLRNRVH 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. NCBI nr
Match: XP_022957322.1 (elongator complex protein 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 468.8 bits (1205), Expect = 3.1e-128
Identity = 226/259 (87.26%), Postives = 243/259 (93.82%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           M RM SNLLDEA+G+DD    SPL+GRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MSRMTSNLLDEAIGIDDSTNLSPLVGRLLLVEDCVETSGAFVLHHLLKRAFSSPHSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IF+AFS SF HYDRVLRKLGCNL AQRDS RF F DMLT+GCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFVAFSQSFVHYDRVLRKLGCNLAAQRDSHRFFFLDMLTVGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NK+HVTI+IDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCS+IAL+
Sbjct: 121 KIQRAVSALIQENKRHVTILIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSIIALS 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVY+D ERP ILQMEYLA++LIKVGPLATGIAKDVHGQLTVLNKPVGGLQ+NLRNRVH
Sbjct: 181 HEDVYLDIERPLILQMEYLAEILIKVGPLATGIAKDVHGQLTVLNKPVGGLQENLRNRVH 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. NCBI nr
Match: XP_008445832.1 (PREDICTED: elongator complex protein 6 [Cucumis melo] >KAA0034041.1 elongator complex protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 5.9e-127
Identity = 226/259 (87.26%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           MDRMASNLLD A+G DDP  PSPLIGRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MDRMASNLLDGAIGFDDPTNPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSPNSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IF+AFS SF HYDR+LRKLGCNL AQRD+GRF+FFDMLTLGCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFLAFSQSFVHYDRILRKLGCNLAAQRDNGRFVFFDMLTLGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NKKHVTIVIDDI LLEVAANGSSN VLDFLHYCHTL SE+GCS+I+L+
Sbjct: 121 KIQRAVDALIQENKKHVTIVIDDISLLEVAANGSSNLVLDFLHYCHTLLSEVGCSIISLD 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVYMD +RP  LQ+EYLADVLIKVGPLATGIAKDVHGQLTVLNKPV GLQD LRNRV 
Sbjct: 181 HEDVYMDIKRPLSLQLEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVEGLQDKLRNRVQ 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. ExPASy Swiss-Prot
Match: Q8L9Y2 (Elongator complex protein 6 OS=Arabidopsis thaliana OX=3702 GN=ELP6 PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.2e-75
Identity = 146/264 (55.30%), Postives = 192/264 (72.73%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDP-AKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNA 60
           MDR + NLLD ALG D+  A PSPL G+++L+EDCVETSG+F+LH L+KR LSS  SS+A
Sbjct: 1   MDR-SLNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSS-NSSDA 60

Query: 61  VIFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLY 120
           +IF+AF+  F+HYDR+LRKLGCNL   + + R +FFDML + CSD    E +   +  L+
Sbjct: 61  LIFLAFARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLF 120

Query: 121 CKIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGS-SNHVLDFLHYCHTLTSEIGCSLIA 180
            +IQ  V  L      ++T+++DD+ LLE+A  GS S+HVLDFLHYCHTL+SE  CSL+ 
Sbjct: 121 REIQETVRKLQSVTSGNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVI 180

Query: 181 LNHEDVYMDTERPR-ILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGL-QDNLR 240
           LNHED+Y   ERP  +LQM  LADV+IK  PLA+G+A DVHGQLTVLNK +    + + R
Sbjct: 181 LNHEDIYASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSR 240

Query: 241 NRVHNFQFYIKENGTEFFYSGSRT 261
           N++ NFQF IKENG ++FY G R+
Sbjct: 241 NKLQNFQFRIKENGIDYFYPGCRS 262

[Close]

BLAST of MS004368 vs. ExPASy Swiss-Prot
Match: Q0IHA2 (Elongator complex protein 6 OS=Xenopus laevis OX=8355 GN=elp6 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.6e-18
Identity = 72/248 (29.03%), Postives = 127/248 (51.21%), Query Frame = 0


Query: 25  IGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAVIFIAFSLSFAHYDRVLRKLGCNLV 84
           +G+  L+ D   T G+FL+HH L   L   ++   V F+A   SF+HY+ V +KLG NL 
Sbjct: 18  LGKFTLLCDS-NTDGSFLVHHFLSYYL---RAGCRVCFVALVQSFSHYNIVAQKLGVNLS 77

Query: 85  AQRDSGRFIFFDML----TLGCSDRSGKETDEGV--------LVGLYCKIQRAVNALIQQ 144
           + +D G+ +F + L     L   D+S  E    +        L  LY  +  A+     Q
Sbjct: 78  SAKDEGQLVFLEGLKSYTDLLFGDKSEAEETNPLCFLRAGSDLRPLYSFVSAALAPSAGQ 137

Query: 145 NKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCH-TLTSEIGCSLIALNH-EDVYMDTER 204
             K   +++DD+ +L ++   +S  VLDF+HYC  T+ ++   +++ L H  +   D E 
Sbjct: 138 PWKCPVLILDDLSVL-LSLGVTSLQVLDFMHYCRATVCTQYKGNVLCLVHGAEESGDEEN 197

Query: 205 PRILQ-MEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVHNFQFYIKEN 258
             +L+ + + + ++++   L+TG  KDVHGQL ++   V   +   +N+   +Q+ I++ 
Sbjct: 198 ELVLRSLSHQSHLILQAEGLSTGFCKDVHGQLKIIRGAVSSGKRG-KNQPEIYQYKIQDK 257

[Close]

BLAST of MS004368 vs. ExPASy Swiss-Prot
Match: B2RYG8 (Elongator complex protein 6 OS=Rattus norvegicus OX=10116 GN=Elp6 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-17
Identity = 74/248 (29.84%), Postives = 124/248 (50.00%), Query Frame = 0


Query: 26  GRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAVIFIAFSLSFAHYDRVLRKLGCNLVA 85
           G+L L+ D  +T G+FL+HH L   L   +++  V F+A   SF+HY+ V +KLG +L A
Sbjct: 19  GKLTLLCD-AKTDGSFLVHHFLSFYL---KANCKVCFVALVQSFSHYNIVGQKLGVSLTA 78

Query: 86  QRDSGRFIFFDML-----TLGCSDRSG------KETDEGVLVGLYCKIQRAVNALIQQNK 145
            R+ G+ +F + L      L  S          +E   G L  LY  IQ  +        
Sbjct: 79  ARERGQLVFLEGLKSSVEVLFHSQEEPHPLQFLREAGAGNLQSLYTFIQDTLKPADSGES 138

Query: 146 --KHVTIVIDDIPLLEVAANGSSNHVLDFLHYCH-TLTSEIGCSLIALNHEDVYMDTERP 205
             K   +++D++ +L ++    +  VLDF+ YC  T+  E+  +++AL H+    + E  
Sbjct: 139 PWKCPVLLVDNLSVL-LSLGVGAVAVLDFMQYCRATVCCELKGNVVALVHDTEGAEDEEN 198

Query: 206 RIL--QMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVHNFQFYIKEN 258
            IL   + + + ++++   LATG  KDVHGQL++L +         R R   +Q+ I++ 
Sbjct: 199 NILLNGLSHQSHLILRTQGLATGFCKDVHGQLSILWRR-SSQPTAQRARSLTYQYKIQDK 258

[Close]

BLAST of MS004368 vs. ExPASy Swiss-Prot
Match: Q8BK75 (Elongator complex protein 6 OS=Mus musculus OX=10090 GN=Elp6 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-17
Identity = 72/249 (28.92%), Postives = 125/249 (50.20%), Query Frame = 0


Query: 26  GRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAVIFIAFSLSFAHYDRVLRKLGCNLVA 85
           G L L+ D  +T G+FL+HH L   L   +++  V F+A   SF+HY+ V +KLG +L A
Sbjct: 19  GTLTLLCD-AKTDGSFLVHHFLSFYL---KANCKVCFVALVQSFSHYNIVGQKLGVSLTA 78

Query: 86  QRDSGRFIFFDMLTLGCSD-----------RSGKETDEGVLVGLYCKIQRAVNALIQQNK 145
            RD G+ +F + L                 +  +E   G L  LY  IQ  +     +  
Sbjct: 79  ARDRGQLVFLEGLKSSVEVLFHSQDEPHPLQFLREAGTGNLQSLYTFIQDTLKPADSEES 138

Query: 146 --KHVTIVIDDIPLLEVAANGSSNHVLDFLHYCH-TLTSEIGCSLIALNHE-DVYMDTER 205
             K+  +++D++ +L ++    +  VLDF+ YC  T+  E+  +++AL H+ +   D   
Sbjct: 139 PWKYPVLLVDNLSVL-LSLGVGAVAVLDFMQYCRATVCCELKGNVVALVHDTEGATDEGN 198

Query: 206 PRILQ-MEYLADVLIKVGPLATGIAKDVHGQLTVL-NKPVGGLQDNLRNRVHNFQFYIKE 258
             +L  + + + ++++   LATG  KDVHGQL++L  +P        R +   +Q+ I++
Sbjct: 199 DTLLNGLSHQSHLILRAEGLATGFCKDVHGQLSILWRRPSRSTAQ--RAQSLTYQYKIQD 258

[Close]

BLAST of MS004368 vs. ExPASy Swiss-Prot
Match: Q0PNE2 (Elongator complex protein 6 OS=Homo sapiens OX=9606 GN=ELP6 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.3e-16
Identity = 68/248 (27.42%), Postives = 125/248 (50.40%), Query Frame = 0


Query: 26  GRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAVIFIAFSLSFAHYDRVLRKLGCNLVA 85
           G+L L+ D  +T G+FL+HH L   L   +++  V F+A   SF+HY  V +KLG +L  
Sbjct: 19  GKLTLLCD-AKTDGSFLVHHFLSFYL---KANCKVCFVALIQSFSHYSIVGQKLGVSLTM 78

Query: 86  QRDSGRFIFFDMLTLGCSD-----------RSGKETDEGVLVGLYCKIQRAVNALIQQNK 145
            R+ G+ +F + L                 +  +E + G L  L+  ++ A+  +     
Sbjct: 79  ARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEA 138

Query: 146 K--HVTIVIDDIPLLEVAANGSSNHVLDFLHYCH-TLTSEIGCSLIALNHEDVYMDTERP 205
           +  +  +++DD+ +L     G+   VLDF+HYC  T+  E+  +++ L H+    + E  
Sbjct: 139 RWTYPVLLVDDLSVLLSLGMGAV-AVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEEN 198

Query: 206 RIL--QMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVHNFQFYIKEN 258
            IL   + + + ++++   LATG  +DVHGQL +L +       + R++   +Q+ I++ 
Sbjct: 199 DILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVH-RDQSFTYQYKIQDK 258

[Close]

BLAST of MS004368 vs. ExPASy TrEMBL
Match: A0A6J1CBS2 (elongator complex protein 6 OS=Momordica charantia OX=3673 GN=LOC111010200 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.2e-143
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           MDRMASN+LDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV
Sbjct: 1   MDRMASNMLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IFIAFS  FAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFIAFSQXFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN
Sbjct: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRV 
Sbjct: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVR 240

Query: 241 NFQFYIKENGTEFFYSGSRT 261
           NFQFYIKENGTEFFYSGSRT
Sbjct: 241 NFQFYIKENGTEFFYSGSRT 260

[Close]

BLAST of MS004368 vs. ExPASy TrEMBL
Match: A0A6J1GYT6 (elongator complex protein 6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458756 PE=3 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.5e-128
Identity = 226/259 (87.26%), Postives = 243/259 (93.82%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           M RM SNLLDEA+G+DD    SPL+GRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MSRMTSNLLDEAIGIDDSTNLSPLVGRLLLVEDCVETSGAFVLHHLLKRAFSSPHSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IF+AFS SF HYDRVLRKLGCNL AQRDS RF F DMLT+GCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFVAFSQSFVHYDRVLRKLGCNLAAQRDSHRFFFLDMLTVGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NK+HVTI+IDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCS+IAL+
Sbjct: 121 KIQRAVSALIQENKRHVTILIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSIIALS 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVY+D ERP ILQMEYLA++LIKVGPLATGIAKDVHGQLTVLNKPVGGLQ+NLRNRVH
Sbjct: 181 HEDVYLDIERPLILQMEYLAEILIKVGPLATGIAKDVHGQLTVLNKPVGGLQENLRNRVH 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. ExPASy TrEMBL
Match: A0A5A7SX52 (Elongator complex protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00250 PE=3 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.8e-127
Identity = 226/259 (87.26%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           MDRMASNLLD A+G DDP  PSPLIGRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MDRMASNLLDGAIGFDDPTNPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSPNSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IF+AFS SF HYDR+LRKLGCNL AQRD+GRF+FFDMLTLGCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFLAFSQSFVHYDRILRKLGCNLAAQRDNGRFVFFDMLTLGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NKKHVTIVIDDI LLEVAANGSSN VLDFLHYCHTL SE+GCS+I+L+
Sbjct: 121 KIQRAVDALIQENKKHVTIVIDDISLLEVAANGSSNLVLDFLHYCHTLLSEVGCSIISLD 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVYMD +RP  LQ+EYLADVLIKVGPLATGIAKDVHGQLTVLNKPV GLQD LRNRV 
Sbjct: 181 HEDVYMDIKRPLSLQLEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVEGLQDKLRNRVQ 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. ExPASy TrEMBL
Match: A0A1S3BDL6 (elongator complex protein 6 OS=Cucumis melo OX=3656 GN=LOC103488736 PE=3 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.8e-127
Identity = 226/259 (87.26%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           MDRMASNLLD A+G DDP  PSPLIGRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MDRMASNLLDGAIGFDDPTNPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSPNSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IF+AFS SF HYDR+LRKLGCNL AQRD+GRF+FFDMLTLGCSDRSGKETDEGVLVGLYC
Sbjct: 61  IFLAFSQSFVHYDRILRKLGCNLAAQRDNGRFVFFDMLTLGCSDRSGKETDEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NKKHVTIVIDDI LLEVAANGSSN VLDFLHYCHTL SE+GCS+I+L+
Sbjct: 121 KIQRAVDALIQENKKHVTIVIDDISLLEVAANGSSNLVLDFLHYCHTLLSEVGCSIISLD 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVYMD +RP  LQ+EYLADVLIKVGPLATGIAKDVHGQLTVLNKPV GLQD LRNRV 
Sbjct: 181 HEDVYMDIKRPLSLQLEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVEGLQDKLRNRVQ 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. ExPASy TrEMBL
Match: A0A6J1JAX8 (elongator complex protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485133 PE=3 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.2e-127
Identity = 227/259 (87.64%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDPAKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNAV 60
           M RM SNLLDEA+GLDD    SPL+GRLLLVEDCVETSGAF+LHHLLKR+ SSP SSNAV
Sbjct: 1   MSRMTSNLLDEAIGLDDSTSLSPLVGRLLLVEDCVETSGAFVLHHLLKRAFSSPHSSNAV 60

Query: 61  IFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLYC 120
           IFIAFS SF HY+RVLRKLGCNL AQRDS RF F DMLT+GCSDRSGKET EGVLVGLYC
Sbjct: 61  IFIAFSQSFVHYERVLRKLGCNLAAQRDSHRFFFLDMLTVGCSDRSGKETGEGVLVGLYC 120

Query: 121 KIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSLIALN 180
           KIQRAV+ALIQ+NK+HVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIG S+IAL+
Sbjct: 121 KIQRAVSALIQENKRHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGGSIIALS 180

Query: 181 HEDVYMDTERPRILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDNLRNRVH 240
           HEDVY+D ERP ILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGL++NLRNRVH
Sbjct: 181 HEDVYLDIERPLILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLEENLRNRVH 240

Query: 241 NFQFYIKENGTEFFYSGSR 260
           NFQFYIKENGTEFFYSGSR
Sbjct: 241 NFQFYIKENGTEFFYSGSR 259

[Close]

BLAST of MS004368 vs. TAIR 10
Match: AT4G10090.1 (elongator protein 6 )

HSP 1 Score: 283.1 bits (723), Expect = 2.2e-76
Identity = 146/264 (55.30%), Postives = 192/264 (72.73%), Query Frame = 0


Query: 1   MDRMASNLLDEALGLDDP-AKPSPLIGRLLLVEDCVETSGAFLLHHLLKRSLSSPQSSNA 60
           MDR + NLLD ALG D+  A PSPL G+++L+EDCVETSG+F+LH L+KR LSS  SS+A
Sbjct: 1   MDR-SLNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSS-NSSDA 60

Query: 61  VIFIAFSLSFAHYDRVLRKLGCNLVAQRDSGRFIFFDMLTLGCSDRSGKETDEGVLVGLY 120
           +IF+AF+  F+HYDR+LRKLGCNL   + + R +FFDML + CSD    E +   +  L+
Sbjct: 61  LIFLAFARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLF 120

Query: 121 CKIQRAVNALIQQNKKHVTIVIDDIPLLEVAANGS-SNHVLDFLHYCHTLTSEIGCSLIA 180
            +IQ  V  L      ++T+++DD+ LLE+A  GS S+HVLDFLHYCHTL+SE  CSL+ 
Sbjct: 121 REIQETVRKLQSVTSGNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVI 180

Query: 181 LNHEDVYMDTERPR-ILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGL-QDNLR 240
           LNHED+Y   ERP  +LQM  LADV+IK  PLA+G+A DVHGQLTVLNK +    + + R
Sbjct: 181 LNHEDIYASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSR 240

Query: 241 NRVHNFQFYIKENGTEFFYSGSRT 261
           N++ NFQF IKENG ++FY G R+
Sbjct: 241 NKLQNFQFRIKENGIDYFYPGCRS 262

The following BLAST results are available for this feature:

BLAST of MS004368 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139240.1	1.7e-142	98.46	elongator complex protein 6 [Momordica charantia]	[more]
XP_038893352.1	8.7e-131	89.58	elongator complex protein 6 [Benincasa hispida]	[more]
XP_023533346.1	1.1e-128	88.80	elongator complex protein 6 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022957322.1	3.1e-128	87.26	elongator complex protein 6 isoform X1 [Cucurbita moschata]	[more]
XP_008445832.1	5.9e-127	87.26	PREDICTED: elongator complex protein 6 [Cucumis melo] >KAA0034041.1 elongator co...	[more]

BLAST of MS004368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9Y2	3.2e-75	55.30	Elongator complex protein 6 OS=Arabidopsis thaliana OX=3702 GN=ELP6 PE=1 SV=1	[more]
Q0IHA2	3.6e-18	29.03	Elongator complex protein 6 OS=Xenopus laevis OX=8355 GN=elp6 PE=2 SV=1	[more]
B2RYG8	3.9e-17	29.84	Elongator complex protein 6 OS=Rattus norvegicus OX=10116 GN=Elp6 PE=2 SV=1	[more]
Q8BK75	8.8e-17	28.92	Elongator complex protein 6 OS=Mus musculus OX=10090 GN=Elp6 PE=2 SV=1	[more]
Q0PNE2	4.3e-16	27.42	Elongator complex protein 6 OS=Homo sapiens OX=9606 GN=ELP6 PE=1 SV=1	[more]

BLAST of MS004368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBS2	8.2e-143	98.46	elongator complex protein 6 OS=Momordica charantia OX=3673 GN=LOC111010200 PE=3 ...	[more]
A0A6J1GYT6	1.5e-128	87.26	elongator complex protein 6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A5A7SX52	2.8e-127	87.26	Elongator complex protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3BDL6	2.8e-127	87.26	elongator complex protein 6 OS=Cucumis melo OX=3656 GN=LOC103488736 PE=3 SV=1	[more]
A0A6J1JAX8	8.2e-127	87.64	elongator complex protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114851...	[more]

BLAST of MS004368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10090.1	2.2e-76	55.30	elongator protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 19..256 e-value: 5.0E-33 score: 116.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 43..205
IPR018627	Elongator complex protein 6	PFAM	PF09807	ELP6	coord: 22..247 e-value: 2.9E-30 score: 105.5
IPR018627	Elongator complex protein 6	PANTHER	PTHR16184	ELONGATOR COMPLEX PROTEIN 6	coord: 2..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004368.1	MS004368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0033588	elongator holoenzyme complex