MS004366 (gene) Bitter gourd (TR) v1

Overview


Name	MS004366
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L10
Location	scaffold92: 2307646 .. 2308344 (+)
RNA-Seq Expression	MS004366
Synteny	MS004366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCTCTTCTAAGCTTTCCCACCTCCAAACCCCCACCATCTTCTCAATTTCTAACCCTAAATCGACCCACAAATCCTCTATCCTTCTCTCCCTTCCGCCATTCCCCGCACCAGGGCCGCCATCACCGCTGCCTCAAGATCAGCGCCGCCATTTCCCGCTCCAAGAAGGAGGAAACCGTCGATACAGTCAAGCAACAGCTCGAGAACTGCTATCTATTGGCCGGAATCAAGTACAAGGGCTTCACCGTCCAGCAATTTCAAGAACTCCGTCGATCTCTCCCCGAAACCTCCAAACTCATCGTCGCCAAAAACACGCTCGTTCTCAAGGCGATTGAGGGGACCTCTTGGGAAGCCCTAAAGCCCTGTATGAAGGGCATGAACGTCTGGCTATTTGTCCACTCCGAGGAGATTCCGGCCGCCATCAAGCCCTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGCGCGGTTTTCGAGGGGAAGTATTACGGGCCGGATGATTTCAAGGCACTGGAGACAATGCCGTCCAGGGCGGAGGTGTATGCCAAAATGTTGGGCCTGTTGAACGGTCCGGCGTCGAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAGGCTTACGTGCAGAAATTGGAGGAGCAGGGCGGCGGCGGCGGGCAG

mRNA sequence

ATGGAAGCCTCTCTTCTAAGCTTTCCCACCTCCAAACCCCCACCATCTTCTCAATTTCTAACCCTAAATCGACCCACAAATCCTCTATCCTTCTCTCCCTTCCGCCATTCCCCGCACCAGGGCCGCCATCACCGCTGCCTCAAGATCAGCGCCGCCATTTCCCGCTCCAAGAAGGAGGAAACCGTCGATACAGTCAAGCAACAGCTCGAGAACTGCTATCTATTGGCCGGAATCAAGTACAAGGGCTTCACCGTCCAGCAATTTCAAGAACTCCGTCGATCTCTCCCCGAAACCTCCAAACTCATCGTCGCCAAAAACACGCTCGTTCTCAAGGCGATTGAGGGGACCTCTTGGGAAGCCCTAAAGCCCTGTATGAAGGGCATGAACGTCTGGCTATTTGTCCACTCCGAGGAGATTCCGGCCGCCATCAAGCCCTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGCGCGGTTTTCGAGGGGAAGTATTACGGGCCGGATGATTTCAAGGCACTGGAGACAATGCCGTCCAGGGCGGAGGTGTATGCCAAAATGTTGGGCCTGTTGAACGGTCCGGCGTCGAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAGGCTTACGTGCAGAAATTGGAGGAGCAGGGCGGCGGCGGCGGGCAG

Coding sequence (CDS)

ATGGAAGCCTCTCTTCTAAGCTTTCCCACCTCCAAACCCCCACCATCTTCTCAATTTCTAACCCTAAATCGACCCACAAATCCTCTATCCTTCTCTCCCTTCCGCCATTCCCCGCACCAGGGCCGCCATCACCGCTGCCTCAAGATCAGCGCCGCCATTTCCCGCTCCAAGAAGGAGGAAACCGTCGATACAGTCAAGCAACAGCTCGAGAACTGCTATCTATTGGCCGGAATCAAGTACAAGGGCTTCACCGTCCAGCAATTTCAAGAACTCCGTCGATCTCTCCCCGAAACCTCCAAACTCATCGTCGCCAAAAACACGCTCGTTCTCAAGGCGATTGAGGGGACCTCTTGGGAAGCCCTAAAGCCCTGTATGAAGGGCATGAACGTCTGGCTATTTGTCCACTCCGAGGAGATTCCGGCCGCCATCAAGCCCTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGCGCGGTTTTCGAGGGGAAGTATTACGGGCCGGATGATTTCAAGGCACTGGAGACAATGCCGTCCAGGGCGGAGGTGTATGCCAAAATGTTGGGCCTGTTGAACGGTCCGGCGTCGAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAGGCTTACGTGCAGAAATTGGAGGAGCAGGGCGGCGGCGGCGGGCAG

Protein sequence

MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEETVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ

Homology

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BLAST of MS004366 vs. NCBI nr
Match: XP_022138927.1 (50S ribosomal protein L10, chloroplastic [Momordica charantia])

HSP 1 Score: 463.0 bits (1190), Expect = 1.5e-126
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFPTSKPPPSSQFLTLNR TNPLSFSPFRHSPHQGRHH CLKISAAISRSKKEE
Sbjct: 1   MEASLLSFPTSKPPPSSQFLTLNRXTNPLSFSPFRHSPHQGRHHHCLKISAAISRSKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+DTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TIDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of MS004366 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 429.9 bits (1104), Expect = 1.4e-116
Identity = 212/233 (90.99%), Postives = 225/233 (96.57%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFP+ K P SSQ LTLNRPTNPLSFSP RHS +QGRH+RCLK++AAISR+KKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of MS004366 vs. NCBI nr
Match: XP_023523503.1 (50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.9 bits (1099), Expect = 5.4e-116
Identity = 211/233 (90.56%), Postives = 223/233 (95.71%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFP+ K P SSQ LTLNRPTNPLSFSP RHS +QGRH+RCLK+S AISR+KKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

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BLAST of MS004366 vs. NCBI nr
Match: XP_022943219.1 (50S ribosomal protein L10, chloroplastic [Cucurbita moschata] >KAG7030766.1 50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114
Identity = 208/232 (89.66%), Postives = 222/232 (95.69%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFP+ K P SSQ LTLNRPTNPLSFSP RHS +QGRH+RCLK++ AISR+KKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

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BLAST of MS004366 vs. NCBI nr
Match: KAG6600094.1 (50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 209/233 (89.70%), Postives = 222/233 (95.28%), Query Frame = 0


Query: 1   MEASLLSFPTSK-PPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKE 60
           MEASLLSFP+ K P  SSQ LTLNRPTNPLSFSP RHS +QGRH+RCLK++ AISR+KKE
Sbjct: 1   MEASLLSFPSFKTPSSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKE 60

Query: 61  ETVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ETV+TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE
Sbjct: 61  ETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LE
Sbjct: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLE 180

Query: 181 TMPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 233
           TMPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 TMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233

[Close]

BLAST of MS004366 vs. ExPASy Swiss-Prot
Match: O80362 (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.7e-84
Identity = 159/229 (69.43%), Postives = 188/229 (82.10%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEA+  + P+S    S  F   +   N L+       PH     + L I +AISR+KKEE
Sbjct: 1   MEATFFTLPSS-TSHSYPFSLKSHFNNSLTLPT---HPHFKPKSKNLTIRSAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVKQQLE+CYLLAGI YKG TV+QFQELR  LP+T+KL+VAKNTLVLKAIEGT WEA
Sbjct: 61  TVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FKALET
Sbjct: 121 LKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGG 230
           +P+RAE+YA++LG L GPAS++VGTIQAPAR L+MVLKAYV+KLEE+GG
Sbjct: 181 LPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of MS004366 vs. ExPASy Swiss-Prot
Match: Q9FY50 (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.4e-76
Identity = 146/227 (64.32%), Postives = 177/227 (77.97%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           ME +LLSF +S  P   Q ++   P    S SP         + R   I +A+SR+KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPKT--SNSP--------NYPRLPVIRSAVSRNKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+ VK  LENC+LLA I YKG TV+QFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L  PA +LV T+QAPARE++MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of MS004366 vs. ExPASy Swiss-Prot
Match: P82139 (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 279.6 bits (714), Expect = 3.1e-74
Identity = 143/233 (61.37%), Postives = 181/233 (77.68%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTN--PLSFSP----FRHSPHQGRHHRCLKISAAIS 60
           ME++L     SKP P++   T +  ++  P  F P    F  + H  +H     I+AAIS
Sbjct: 1   MESTLF---LSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTH--KHPTTTTITAAIS 60

Query: 61  RSKKEETVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIE 120
           R+KKEETV+TV++ LENCYLLA I YKGFTV+QFQ+LR++LPE + LIVAKNTLV KA++
Sbjct: 61  RTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQ 120

Query: 121 GTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDD 180
            T W A+KPCMKGMN WLFVHSEEIP AIKPYR FQKE+KLEDNDFTGA FEGK+YGP +
Sbjct: 121 DTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGE 180

Query: 181 FKALETMPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQ 228
            K LETMPS+AE++AK+LG L  P S+LVGT+QAPAR+L+ +LKAY++KLE++
Sbjct: 181 VKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDE 228

[Close]

BLAST of MS004366 vs. ExPASy Swiss-Prot
Match: A2BUH9 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9515) OX=167542 GN=rplJ PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-18
Identity = 57/171 (33.33%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 58  KEETVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLI--VAKNTLVLKAIEG 117
           K++ V  +K  L++  +   + YKG T+++  +LR  L +T+K I  V KN+L+ KAI+G
Sbjct: 8   KQKIVTELKSLLDDSEMAVVLDYKGLTIKEMSDLRSRL-QTNKGICKVTKNSLMRKAIDG 67

Query: 118 TS-WEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDD 177
            S W  L+  + G N ++ +  E++  A+K  + FQKE K   ++  GA+FEG+     +
Sbjct: 68  NSNWTDLESLLTGTNAFVLI-KEDVGGAVKAIQSFQKETK--KSETKGALFEGRLLSQSE 127

Query: 178 FKALETMPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLE 226
            K + ++PSR  + AK+ G LNG A+ +  +I      L   LK + +K E
Sbjct: 128 IKEIASLPSREVLMAKIAGALNGVATKIAISINEVPSGLARSLKQHSEKSE 174

[Close]

BLAST of MS004366 vs. ExPASy Swiss-Prot
Match: Q7V383 (50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) OX=59919 GN=rplJ PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 53/170 (31.18%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 58  KEETVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLI-VAKNTLVLKAIEGT 117
           K++ V  +K  L++  +   + YKG T+++  +LR  L   + +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTEIKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTNNGICKVTKNSLMRKAIDGN 67

Query: 118 S-WEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDF 177
           S W  L+  + G N ++ +  E++  A+K  + FQKE K   ++  GA+FEG+     + 
Sbjct: 68  SNWTDLESLLTGTNAFVLI-KEDVGGAVKAIQSFQKETK--KSETKGALFEGRLLSESEI 127

Query: 178 KALETMPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLE 226
           K + ++PSR  + AK+ G LNG A+ +  +I      +   LK + +K E
Sbjct: 128 KEIASLPSREVLMAKIAGALNGVATKIAISINEVPSGIARSLKQHSEKSE 174

[Close]

BLAST of MS004366 vs. ExPASy TrEMBL
Match: A0A6J1CCK7 (50S ribosomal protein L10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009986 PE=3 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 7.4e-127
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFPTSKPPPSSQFLTLNR TNPLSFSPFRHSPHQGRHH CLKISAAISRSKKEE
Sbjct: 1   MEASLLSFPTSKPPPSSQFLTLNRXTNPLSFSPFRHSPHQGRHHHCLKISAAISRSKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+DTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TIDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of MS004366 vs. ExPASy TrEMBL
Match: A0A6J1JII9 (50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487249 PE=3 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 6.9e-117
Identity = 212/233 (90.99%), Postives = 225/233 (96.57%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFP+ K P SSQ LTLNRPTNPLSFSP RHS +QGRH+RCLK++AAISR+KKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of MS004366 vs. ExPASy TrEMBL
Match: A0A6J1FTN1 (50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448014 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.0e-115
Identity = 208/232 (89.66%), Postives = 222/232 (95.69%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASLLSFP+ K P SSQ LTLNRPTNPLSFSP RHS +QGRH+RCLK++ AISR+KKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVK+QL+ CYLLAGIKYKGFTV+QFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 233
           MPSRAEVYAKMLGLL GPASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of MS004366 vs. ExPASy TrEMBL
Match: A0A5A7SUB8 (50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00270 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 209/233 (89.70%), Postives = 222/233 (95.28%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASL+SF +  PPPSSQ LTLNRPTNPLSFS  RHS +Q RH+R LK++AAISR+KKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVKQQLE+CYLLAGIKYKGFTV++FQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLL  PASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of MS004366 vs. ExPASy TrEMBL
Match: A0A1S3BDM0 (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 209/233 (89.70%), Postives = 222/233 (95.28%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           MEASL+SF +  PPPSSQ LTLNRPTNPLSFS  RHS +Q RH+R LK++AAISR+KKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+TVKQQLE+CYLLAGIKYKGFTV++FQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 234
           MPSRAEVYAKMLGLL  PASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of MS004366 vs. TAIR 10
Match: AT5G13510.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 285.8 bits (730), Expect = 3.1e-77
Identity = 146/227 (64.32%), Postives = 177/227 (77.97%), Query Frame = 0


Query: 1   MEASLLSFPTSKPPPSSQFLTLNRPTNPLSFSPFRHSPHQGRHHRCLKISAAISRSKKEE 60
           ME +LLSF +S  P   Q ++   P    S SP         + R   I +A+SR+KKEE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTPKT--SNSP--------NYPRLPVIRSAVSRNKKEE 60

Query: 61  TVDTVKQQLENCYLLAGIKYKGFTVQQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           TV+ VK  LENC+LLA I YKG TV+QFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WEA
Sbjct: 61  TVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LET
Sbjct: 121 LKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLET 180

Query: 181 MPSRAEVYAKMLGLLNGPASSLVGTIQAPARELLMVLKAYVQKLEEQ 228
           MP+RAEVYAKMLG L  PA +LV T+QAPARE++MVL AY++KLE++
Sbjct: 181 MPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of MS004366 vs. TAIR 10
Match: AT3G12370.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 4.0e-48
Identity = 92/146 (63.01%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 66  KQQLENCYLLAGIKYKGFTVQQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTSWEALKP 125
           K  LENC+ + GI Y G +V+Q QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLNGPASSLVGTIQAP 210
           RA+VY  MLG L+ PA  LV  +QAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

The following BLAST results are available for this feature:

BLAST of MS004366 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138927.1	1.5e-126	98.71	50S ribosomal protein L10, chloroplastic [Momordica charantia]	[more]
XP_022990377.1	1.4e-116	90.99	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]
XP_023523503.1	5.4e-116	90.56	50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022943219.1	1.0e-114	89.66	50S ribosomal protein L10, chloroplastic [Cucurbita moschata] >KAG7030766.1 50S ...	[more]
KAG6600094.1	1.1e-113	89.70	50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of MS004366 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80362	9.7e-84	69.43	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
Q9FY50	4.4e-76	64.32	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82139	3.1e-74	61.37	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
A2BUH9	9.3e-18	33.33	50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9515) OX=167542...	[more]
Q7V383	1.2e-17	31.18	50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCM...	[more]

BLAST of MS004366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCK7	7.4e-127	98.71	50S ribosomal protein L10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JII9	6.9e-117	90.99	50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FTN1	5.0e-115	89.66	50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7SUB8	1.0e-112	89.70	50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BDM0	1.0e-112	89.70	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]

BLAST of MS004366 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13510.1	3.1e-77	64.32	Ribosomal protein L10 family protein	[more]
AT3G12370.1	4.0e-48	63.01	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..150 e-value: 2.0E-20 score: 72.8
IPR001790	Ribosomal protein L10P	PANTHER	PTHR11560	39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL	coord: 33..229
IPR001790	Ribosomal protein L10P	CDD	cd05797	Ribosomal_L10	coord: 54..211 e-value: 3.83145E-50 score: 159.207
None	No IPR available	GENE3D	6.10.250.290		coord: 182..225 e-value: 5.0E-12 score: 47.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 52..181 e-value: 2.0E-30 score: 107.7
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 55..223
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18.54204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004366.1	MS004366.1	mRNA