MS004360 (gene) Bitter gourd (TR) v1

Overview
NameMS004360
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSH3 domain-containing protein
Locationscaffold92: 2218278 .. 2218766 (+)
RNA-Seq ExpressionMS004360
SyntenyMS004360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCATTTGTGTCACTATCACATTGCATCTCCTGCTCCTGACTTGTGGCCTTATCACATTGCATCTCCTGCTCCTGATTTGTGTAATTATCACATTGCATCATCTCCTGCTCTTGACTTGTTGTATTATCACATTGCGTCTGCTGCTCCTGACTTGTGGCATTATCGCATTGCGTCTGCTGCTCCTGACTTGTGGCATTATCGCATTGCATCTCCTGCTCCTGACTTGTGGCGTTGTCGCATTGTGTCTCCGGCTCCTGACTTGTGGCATTATCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCATCTCCTGCCCCTGATCTGCGGCATTGTCGCATTGTTTCTCCTGCTCCTGATCTGCGGCATTGCCACATTGCTTCTCCTGCTCCTGATCTGTGCCATTAT

mRNA sequence

CCTCATTTGTGTCACTATCACATTGCATCTCCTGCTCCTGACTTGTGGCCTTATCACATTGCATCTCCTGCTCCTGATTTGTGTAATTATCACATTGCATCATCTCCTGCTCTTGACTTGTTGTATTATCACATTGCGTCTGCTGCTCCTGACTTGTGGCATTATCGCATTGCGTCTGCTGCTCCTGACTTGTGGCATTATCGCATTGCATCTCCTGCTCCTGACTTGTGGCGTTGTCGCATTGTGTCTCCGGCTCCTGACTTGTGGCATTATCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCATCTCCTGCCCCTGATCTGCGGCATTGTCGCATTGTTTCTCCTGCTCCTGATCTGCGGCATTGCCACATTGCTTCTCCTGCTCCTGATCTGTGCCATTAT

Coding sequence (CDS)

CCTCATTTGTGTCACTATCACATTGCATCTCCTGCTCCTGACTTGTGGCCTTATCACATTGCATCTCCTGCTCCTGATTTGTGTAATTATCACATTGCATCATCTCCTGCTCTTGACTTGTTGTATTATCACATTGCGTCTGCTGCTCCTGACTTGTGGCATTATCGCATTGCGTCTGCTGCTCCTGACTTGTGGCATTATCGCATTGCATCTCCTGCTCCTGACTTGTGGCGTTGTCGCATTGTGTCTCCGGCTCCTGACTTGTGGCATTATCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCGTCTCCTGCTCCTGACTTGTGGCATTGTCGCATTGCATCTCCTGCCCCTGATCTGCGGCATTGTCGCATTGTTTCTCCTGCTCCTGATCTGCGGCATTGCCACATTGCTTCTCCTGCTCCTGATCTGTGCCATTAT

Protein sequence

PHLCHYHIASPAPDLWPYHIASPAPDLCNYHIASSPALDLLYYHIASAAPDLWHYRIASAAPDLWHYRIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLRHCRIVSPAPDLRHCHIASPAPDLCHY
Homology
BLAST of MS004360 vs. NCBI nr
Match: MBK7928868.1 (hypothetical protein [Bryobacterales bacterium])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 46/128 (35.94%), Postives = 56/128 (43.75%), Query Frame = 0

Query: 9   ASPAPDLWPYHIASPAPDLCNYHIASSPALDLLYYHIASAAPDLWHYRIASAAPDLWHYR 68
           A P PD+W    A P PD+     A  P             PD+W    A   PD+W   
Sbjct: 36  AFPPPDIWEAAHAFPPPDIWELAHAFPP-------------PDIWELAHAFPPPDIWELA 95

Query: 69  IASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHCR 128
            A P PD+W      P PD+W    A P PD+W    A P PD+W    A P PD+W   
Sbjct: 96  HAFPPPDIWELAHAFPPPDIWELAHAFPPPDIWELAHAFPPPDIWELAHAFPPPDIWELA 150

Query: 129 IASPAPDL 137
            A P PD+
Sbjct: 156 HAFPPPDI 150

BLAST of MS004360 vs. NCBI nr
Match: XP_037194990.1 (putative variant sh3 domain-containing protein [Botrytis fragariae] >KAF5876044.1 putative variant sh3 domain-containing protein [Botrytis fragariae])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHY 70
           P P L+   + SPAP      H++ +P+    +Y   + +P   HY  R  S AP+ +  
Sbjct: 161 PQPPLYQSRMRSPAPFSQIPSHVSRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTS 220

Query: 71  RIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHC 130
           R+ SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  
Sbjct: 221 RVPSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYIS 280

Query: 131 RIASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
           R  SPAPD    R  SP+P+       SPAP
Sbjct: 281 RGPSPAPDHYASRAPSPSPNQYGSRAPSPAP 311

BLAST of MS004360 vs. NCBI nr
Match: TGO26669.1 (hypothetical protein BPAE_0055g00400 [Botrytis paeoniae])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHY 70
           P P L+   + SPAP      H++ +P+    +Y   + +P   HY  R  S AP+ +  
Sbjct: 161 PQPPLYQSRMRSPAPFSRIPSHVSRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTS 220

Query: 71  RIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHC 130
           R+ SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  
Sbjct: 221 RVPSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYVS 280

Query: 131 RIASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
           R  SPAPD    R  SP+P+       SPAP
Sbjct: 281 RGPSPAPDHYASRAPSPSPNQYGSRAPSPAP 311

BLAST of MS004360 vs. NCBI nr
Match: THV53096.1 (hypothetical protein BGAL_0059g00060 [Botrytis galanthina])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHY 70
           P P L+   + SPAP      H++ +P+    +Y   + +P   HY  R  S AP+ +  
Sbjct: 161 PQPPLYQSRMRSPAPFSQFPSHVSRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTS 220

Query: 71  RIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHC 130
           R+ SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  
Sbjct: 221 RVPSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYTS 280

Query: 131 RIASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
           R  SPAPD    R  SP+P+       SPAP
Sbjct: 281 RGPSPAPDHYASRAPSPSPNQYGSRAPSPAP 311

BLAST of MS004360 vs. NCBI nr
Match: KAF7960020.1 (hypothetical protein EAE96_001620 [Botrytis aclada])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 59/151 (39.07%), Postives = 84/151 (55.63%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAPDLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHYR 70
           P P L+   + SPAP     HI+ +P+    +Y   + +P   HY  R  S AP+ +  R
Sbjct: 161 PQPPLYQSRMRSPAP-FSPSHISRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTSR 220

Query: 71  IASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHCR 130
           + SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAP+ +  R
Sbjct: 221 VPSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPNHYASR 280

Query: 131 IASPAPDLRHCRIVSPAPDLRHCHIASPAPD 160
             SPAPD    R  SPAPD       SP+P+
Sbjct: 281 GPSPAPDHYISRGPSPAPDHYASRAPSPSPN 310

BLAST of MS004360 vs. ExPASy TrEMBL
Match: A0A4Z1FUU6 (SH3 domain-containing protein OS=Botrytis paeoniae OX=278948 GN=BPAE_0055g00400 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-17
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHY 70
           P P L+   + SPAP      H++ +P+    +Y   + +P   HY  R  S AP+ +  
Sbjct: 161 PQPPLYQSRMRSPAPFSRIPSHVSRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTS 220

Query: 71  RIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHC 130
           R+ SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  
Sbjct: 221 RVPSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYVS 280

Query: 131 RIASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
           R  SPAPD    R  SP+P+       SPAP
Sbjct: 281 RGPSPAPDHYASRAPSPSPNQYGSRAPSPAP 311

BLAST of MS004360 vs. ExPASy TrEMBL
Match: A0A4V4HVF8 (SH3 domain-containing protein OS=Botrytis galanthina OX=278940 GN=BGAL_0059g00060 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-17
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHY 70
           P P L+   + SPAP      H++ +P+    +Y   + +P   HY  R  S AP+ +  
Sbjct: 161 PQPPLYQSRMRSPAPFSQFPSHVSRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTS 220

Query: 71  RIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHC 130
           R+ SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  
Sbjct: 221 RVPSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYTS 280

Query: 131 RIASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
           R  SPAPD    R  SP+P+       SPAP
Sbjct: 281 RGPSPAPDHYASRAPSPSPNQYGSRAPSPAP 311

BLAST of MS004360 vs. ExPASy TrEMBL
Match: A0A4Z1J4W0 (SH3 domain-containing protein OS=Botryotinia narcissicola OX=278944 GN=BOTNAR_0057g00140 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 58/151 (38.41%), Postives = 82/151 (54.30%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHY--RIASAAPDLWHY 70
           P P L+   + SPAP      H + +P+    +Y   + +P   HY  R  S AP+ +  
Sbjct: 161 PQPPLYQSRMRSPAPFSQIPSHASRAPSPGPSHYTSRAPSPGPSHYTPRAPSPAPNHYTA 220

Query: 71  RIASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHC 130
           R+ SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  
Sbjct: 221 RVPSPAPNHYSARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYIS 280

Query: 131 RIASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
           R  SPAPD    R  SP+P+       SPAP
Sbjct: 281 RGPSPAPDHYASRAPSPSPNQYGSRAPSPAP 311

BLAST of MS004360 vs. ExPASy TrEMBL
Match: W9CRX4 (SH3 domain-containing protein OS=Sclerotinia borealis (strain F-4128) OX=1432307 GN=SBOR_0991 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 0

Query: 16  WPYHIA---SPAPDLCNYHIASSPALDLLYYHIASAAPDLWHYRIASAAPDLWHYRIASP 75
           +P H++   SP+P   N+HI+ +P          S AP+ +  R+ S AP+ +  R  SP
Sbjct: 180 FPSHVSRAPSPSP---NHHISRAP----------SPAPNHYTSRVPSPAPNRYMSRAPSP 239

Query: 76  APDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHCRIASP 135
           AP+ +  R  SPAP+ +  R  SPAP+ +  R  SPAP+ ++ R  SPAP+ +  R  SP
Sbjct: 240 APNHYTSRGPSPAPNRYVSRAPSPAPNHYTSRAPSPAPNHYNDRAPSPAPNHYTARAPSP 299

Query: 136 APDLRHCRIVSPAPDLRHCHIASPAPDLCHY 164
           AP+    R+ SPAP+     + SP+P+  HY
Sbjct: 300 APNHYTSRVPSPAPNHYESRVPSPSPN--HY 315

BLAST of MS004360 vs. ExPASy TrEMBL
Match: A0A4Z1GTT3 (SH3 domain-containing protein OS=Botrytis hyacinthi OX=278943 GN=BHYA_0039g00350 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 0

Query: 11  PAPDLWPYHIASPAP-DLCNYHIASSPALDLLYYHIASAAPDLWHYRIASAAPDLWHYRI 70
           P P L+   + SPAP      H++ +P          S  P  +  R  S AP+ +  R+
Sbjct: 161 PQPPLYQSRMRSPAPFSQIPSHVSRAP----------SPGPSHYTSRAPSPAPNHYTARV 220

Query: 71  ASPAPDLWRCRIVSPAPDLWHYRIASPAPDLWHCRIASPAPDLWHCRIASPAPDLWHCRI 130
            SPAP+ +  RI SPAP+ ++ R+ SPAP+ +  R  SPAP+ +  R  SPAPD +  R 
Sbjct: 221 PSPAPNHYTARIPSPAPNYYNPRVPSPAPNHYTSRAPSPAPNHYISRGPSPAPDHYISRG 280

Query: 131 ASPAPDLRHCRIVSPAPDLRHCHIASPAP 159
            SPAPD    R  SP+P+       SPAP
Sbjct: 281 PSPAPDHYASRAPSPSPNQYGSRAPSPAP 299

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MBK7928868.11.2e-1635.94hypothetical protein [Bryobacterales bacterium][more]
XP_037194990.11.5e-1638.41putative variant sh3 domain-containing protein [Botrytis fragariae] >KAF5876044.... [more]
TGO26669.11.5e-1638.41hypothetical protein BPAE_0055g00400 [Botrytis paeoniae][more]
THV53096.11.5e-1638.41hypothetical protein BGAL_0059g00060 [Botrytis galanthina][more]
KAF7960020.11.5e-1639.07hypothetical protein EAE96_001620 [Botrytis aclada][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4Z1FUU67.4e-1738.41SH3 domain-containing protein OS=Botrytis paeoniae OX=278948 GN=BPAE_0055g00400 ... [more]
A0A4V4HVF87.4e-1738.41SH3 domain-containing protein OS=Botrytis galanthina OX=278940 GN=BGAL_0059g0006... [more]
A0A4Z1J4W02.2e-1638.41SH3 domain-containing protein OS=Botryotinia narcissicola OX=278944 GN=BOTNAR_00... [more]
W9CRX42.4e-1537.09SH3 domain-containing protein OS=Sclerotinia borealis (strain F-4128) OX=1432307... [more]
A0A4Z1GTT33.1e-1537.58SH3 domain-containing protein OS=Botrytis hyacinthi OX=278943 GN=BHYA_0039g00350... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004360.1MS004360.1mRNA