MS004348 (gene) Bitter gourd (TR) v1

Overview


Name	MS004348
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DEAD-box ATP-dependent RNA helicase 18
Location	scaffold92: 2078781 .. 2078888 (+)
RNA-Seq Expression	MS004348
Synteny	MS004348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGAGGAAGCACTAGCCTCATTTGTATCCCTCTCAAGTGGTGTCCTTCTATGCACAGATGTCGCAGCCTCTGGACTCGACATCCCTGGCGTCGATGGTATGCTTCAG

mRNA sequence

AGGGAGGAAGCACTAGCCTCATTTGTATCCCTCTCAAGTGGTGTCCTTCTATGCACAGATGTCGCAGCCTCTGGACTCGACATCCCTGGCGTCGATGGTATGCTTCAG

Coding sequence (CDS)

AGGGAGGAAGCACTAGCCTCATTTGTATCCCTCTCAAGTGGTGTCCTTCTATGCACAGATGTCGCAGCCTCTGGACTCGACATCCCTGGCGTCGATGGTATGCTTCAG

Protein sequence

REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ

Homology

[Close]

BLAST of MS004348 vs. NCBI nr
Match: KAG7030649.1 (DEAD-box ATP-dependent RNA helicase 18 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
          RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 36 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 71

[Close]

BLAST of MS004348 vs. NCBI nr
Match: KAG6599970.1 (DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 310 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 345

[Close]

BLAST of MS004348 vs. NCBI nr
Match: XP_022995332.1 (DEAD-box ATP-dependent RNA helicase 18 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 310 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 345

[Close]

BLAST of MS004348 vs. NCBI nr
Match: KAG7030648.1 (DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 310 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 345

[Close]

BLAST of MS004348 vs. NCBI nr
Match: XP_022941834.1 (DEAD-box ATP-dependent RNA helicase 18 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 310 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 345

[Close]

BLAST of MS004348 vs. ExPASy Swiss-Prot
Match: Q8GXD6 (DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana OX=3702 GN=RH49 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-07
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           R+ ALASF   SSGVLLCTDVAA GLDIPG+D ++Q
Sbjct: 308 RDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQ 343

[Close]

BLAST of MS004348 vs. ExPASy Swiss-Prot
Match: Q9FLB0 (DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana OX=3702 GN=RH18 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.4e-07
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           R++ALASF   SSG LLCTDVAA GLDIPG+D ++Q
Sbjct: 317 RDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQ 352

[Close]

BLAST of MS004348 vs. ExPASy Swiss-Prot
Match: Q761Z9 (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 9.6e-07
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASF +LSSG+L+CTDVAA GLDIP VD ++Q
Sbjct: 327 REKALASFSALSSGILVCTDVAARGLDIPHVDLIVQ 362

[Close]

BLAST of MS004348 vs. ExPASy Swiss-Prot
Match: Q9FVV4 (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana OX=3702 GN=RH55 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.2e-06
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGV 32
           R+ ALASF   SSGVLLCTDVAA GLDIPG+
Sbjct: 281 RDTALASFTEASSGVLLCTDVAARGLDIPGI 311

[Close]

BLAST of MS004348 vs. ExPASy Swiss-Prot
Match: Q54S03 (Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 1.0e-03
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           R      FV+   G+L+CTDVAA GLDIP VD ++Q
Sbjct: 404 RTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQ 439

[Close]

BLAST of MS004348 vs. ExPASy TrEMBL
Match: A0A6J1JYJ7 (DEAD-box ATP-dependent RNA helicase 18 OS=Cucurbita maxima OX=3661 GN=LOC111490906 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 310 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 345

[Close]

BLAST of MS004348 vs. ExPASy TrEMBL
Match: A0A6J1FPL3 (DEAD-box ATP-dependent RNA helicase 18 OS=Cucurbita moschata OX=3662 GN=LOC111447076 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-07
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD +LQ
Sbjct: 310 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQ 345

[Close]

BLAST of MS004348 vs. ExPASy TrEMBL
Match: A0A5D3D6C0 (DEAD-box ATP-dependent RNA helicase 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00410 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD ++Q
Sbjct: 317 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCIVQ 352

[Close]

BLAST of MS004348 vs. ExPASy TrEMBL
Match: A0A0A0KSG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G217150 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD ++Q
Sbjct: 317 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCIVQ 352

[Close]

BLAST of MS004348 vs. ExPASy TrEMBL
Match: A0A6J1D0N8 (DEAD-box ATP-dependent RNA helicase 18 OS=Momordica charantia OX=3673 GN=LOC111015937 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           RE+ALASFVSLSSGVLLCTDVAA GLDIPGVD ++Q
Sbjct: 317 REKALASFVSLSSGVLLCTDVAARGLDIPGVDCIVQ 352

[Close]

BLAST of MS004348 vs. TAIR 10
Match: AT1G71370.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-08
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           R+ ALASF   SSGVLLCTDVAA GLDIPG+D ++Q
Sbjct: 308 RDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQ 343

[Close]

BLAST of MS004348 vs. TAIR 10
Match: AT5G05450.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-08
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           R++ALASF   SSG LLCTDVAA GLDIPG+D ++Q
Sbjct: 317 RDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQ 352

[Close]

BLAST of MS004348 vs. TAIR 10
Match: AT1G71280.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 50.1 bits (118), Expect = 4.4e-07
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGV 32
           R+ ALASF   SSGVLLCTDVAA GLDIPG+
Sbjct: 281 RDTALASFTEASSGVLLCTDVAARGLDIPGI 311

[Close]

BLAST of MS004348 vs. TAIR 10
Match: AT3G18600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 9.3e-05
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 0


Query: 1   REEALASFVSLSSGVLLCTDVAASGLDIPGVDGMLQ 37
           R +    F+    G+LLCTDVAA GLDIP VD ++Q
Sbjct: 373 RTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQ 408

The following BLAST results are available for this feature:

BLAST of MS004348 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030649.1	9.3e-07	88.89	DEAD-box ATP-dependent RNA helicase 18 [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6599970.1	9.3e-07	88.89	DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022995332.1	9.3e-07	88.89	DEAD-box ATP-dependent RNA helicase 18 [Cucurbita maxima]	[more]
KAG7030648.1	9.3e-07	88.89	DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_022941834.1	9.3e-07	88.89	DEAD-box ATP-dependent RNA helicase 18 [Cucurbita moschata]	[more]

BLAST of MS004348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXD6	4.3e-07	72.22	DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana OX=3702 GN=RH49 P...	[more]
Q9FLB0	7.4e-07	69.44	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana OX=3702 GN=RH18 P...	[more]
Q761Z9	9.6e-07	72.22	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9FVV4	6.2e-06	77.42	DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana OX=3702 GN=RH55 P...	[more]
Q54S03	1.0e-03	52.78	Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum OX=44689 G...	[more]

BLAST of MS004348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYJ7	4.5e-07	88.89	DEAD-box ATP-dependent RNA helicase 18 OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1FPL3	4.5e-07	88.89	DEAD-box ATP-dependent RNA helicase 18 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A5D3D6C0	1.0e-06	86.11	DEAD-box ATP-dependent RNA helicase 18 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KSG4	1.0e-06	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G217150 PE=3 SV=1	[more]
A0A6J1D0N8	1.0e-06	86.11	DEAD-box ATP-dependent RNA helicase 18 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of MS004348 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71370.1	3.1e-08	72.22	DEA(D/H)-box RNA helicase family protein	[more]
AT5G05450.1	5.2e-08	69.44	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G71280.1	4.4e-07	77.42	DEA(D/H)-box RNA helicase family protein	[more]
AT3G18600.1	9.3e-05	52.78	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 1..33 e-value: 3.0E-5 score: 24.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..36 e-value: 1.7E-7 score: 32.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004348.1	MS004348.1	mRNA