MS004152 (gene) Bitter gourd (TR) v1

Overview


Name	MS004152
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	replication protein A 14 kDa subunit B-like
Location	scaffold92: 356973 .. 357496 (+)
RNA-Seq Expression	MS004152
Synteny	MS004152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTGTTCAAGTTACCAAAAGTGATGGTGGAGTTGTCACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCAATTTTGAACATTCGACGGACTTTGGAAACACATTTGGTATTATACAATAATCAATTCATTCTGTTATTACTAATGCCATTGATAATATCTTACTGTTACACTCACTTTGAGAGGAACAATAGGATAATTAATAGGAAGGAGAGGTATTAATACCTCCCTTTGGTGTCGATGAATTGTTTGAAAATTTCTGCTTTAAAAGTTAAAACCAAAACTCTTTGAGTTGAAATTTACCTCTTTTGCAGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG

mRNA sequence

ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTGTTCAAGTTACCAAAAGTGATGGTGGAGTTGTCACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCAATTTTGAACATTCGACGGACTTTGGAAACACATTTGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG

Coding sequence (CDS)

ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTGTTCAAGTTACCAAAAGTGATGGTGGAGTTGTCACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCAATTTTGAACATTCGACGGACTTTGGAAACACATTTGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG

Protein sequence

MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL

Homology

[Close]

BLAST of MS004152 vs. NCBI nr
Match: XP_022150618.1 (replication protein A 14 kDa subunit B-like [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 4.0e-50
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVFVNAELLKLHIGRKIRAV QVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEVIGIAESNKIIN EHSTDFGNTFDAQSYNQLCQLANGEFKSIFL
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

[Close]

BLAST of MS004152 vs. NCBI nr
Match: KAG6601223.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.8 bits (473), Expect = 9.6e-44
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVF N ELL +H GRKIRAVVQV +SDGGVVTGKSTDEQ LTVHGLP VPLMNF
Sbjct: 229 MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 288

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIAE NKIIN EH TDFGNTFDAQSYNQLCQLANGEF+S+FL
Sbjct: 289 VEVVGIAEGNKIINVEHWTDFGNTFDAQSYNQLCQLANGEFRSLFL 334

[Close]

BLAST of MS004152 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVF N ELL +H GRKIRAVVQV +SDGGVVTGKSTDEQ LTVHGLP VPLMNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIAE NKIIN EH TDFG TFDAQSYNQLCQLANGEF+S+F+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRSLFM 106

[Close]

BLAST of MS004152 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+ GLP VPLMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIAE+NKIIN EH TDFG TFD QSYNQLCQLANGEF+S+F+
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRSLFI 106

[Close]

BLAST of MS004152 vs. NCBI nr
Match: XP_022988152.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 88/106 (83.02%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVF N ELL +H GRKIRAVVQV +SD GVVTGKSTDEQ LTVHGLP VPLMNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIAE NKIIN EH TDFG  FDAQSYNQLCQLANGEF+S+FL
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]

BLAST of MS004152 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-29
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTS+PA FVN  LL+ +IG+K+RAV+QV +SD G V GKSTD+Q++ V G P+ PL  +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           +EVIGIAE++  I  E  T+FG++FD Q+YN+LC+LANGEF+ +F+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of MS004152 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-27
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMN 60
           MDTS+P+ FVN  LL+  IG+K+R V+QVT S+ G V GKSTD+ ++ V G  P  PL  
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANGEFK +F+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of MS004152 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-26
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTS PA FVN E+LK+ +GR++R VVQ  + +GG++ G+STD  +LT+ G    P+ ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VE+IGIAE N+ I  E  TDFG  FD   +N LC+LANG+ K +FL
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]

BLAST of MS004152 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVFVNAELLKLHIGRKIRAV QVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEVIGIAESNKIIN EHSTDFGNTFDAQSYNQLCQLANGEFKSIFL
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

[Close]

BLAST of MS004152 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.4e-42
Identity = 88/106 (83.02%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVF N ELL +H GRKIRAVVQV +SD GVVTGKSTDEQ LTVHGLP VPLMNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIAE NKIIN EH TDFG  FDAQSYNQLCQLANGEF+S+FL
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]

BLAST of MS004152 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.7e-42
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIA+SNK IN EH TDFG TFD +SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]

BLAST of MS004152 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.7e-42
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIA+SNK IN EH TDFG TFD +SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]

BLAST of MS004152 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.3e-40
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTSNPAVFVN ELL +H GRKIRAVVQV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           VEV+GIAESNK I  E  TDFG TFD  SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]

BLAST of MS004152 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-30
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60
           MDTS+PA FVN  LL+ +IG+K+RAV+QV +SD G V GKSTD+Q++ V G P+ PL  +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           +EVIGIAE++  I  E  T+FG++FD Q+YN+LC+LANGEF+ +F+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of MS004152 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMN 60
           MDTS+P+ FVN  LL+  IG+K+R V+QVT S+ G V GKSTD+ ++ V G  P  PL  
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANGEFK +F+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of MS004152 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-28
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MDTSNPAVFVNAELLKLHIGRKIRAVVQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMN 60
           MDTS+P+ FVN  LL+  IG+K+R V+QVT S+ G V GKSTD+ ++ V G  P  PL  
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIAESNKIINFEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 107
           ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANGEFK +F+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:

BLAST of MS004152 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150618.1	4.0e-50	98.11	replication protein A 14 kDa subunit B-like [Momordica charantia]	[more]
KAG6601223.1	9.6e-44	85.85	Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023539791.1	1.1e-42	83.96	replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]	[more]
XP_038893019.1	3.1e-42	81.13	replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ...	[more]
XP_022988152.1	1.5e-41	83.02	replication protein A 14 kDa subunit B-like [Cucurbita maxima]	[more]

BLAST of MS004152 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLG7	2.4e-29	56.60	Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ...	[more]
Q9LXK1	1.7e-27	57.01	Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ...	[more]
Q9SDK9	1.4e-26	50.94	Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of MS004152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9X1	1.9e-50	98.11	replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1JC99	7.4e-42	83.02	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3BGM8	9.7e-42	79.25	replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489...	[more]
A0A5A7SU42	9.7e-42	79.25	Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KRF2	5.3e-40	78.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1	[more]

BLAST of MS004152 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18590.1	1.7e-30	56.60	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.1	1.2e-28	57.01	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.2	1.2e-28	57.01	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013970	Replication factor A protein 3	PFAM	PF08661	Rep_fac-A_3	coord: 1..99 e-value: 3.7E-18 score: 65.8
None	No IPR available	GENE3D	2.40.50.140		coord: 1..106 e-value: 1.6E-19 score: 71.9
None	No IPR available	PANTHER	PTHR47058:SF1	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 1..106
None	No IPR available	PANTHER	PTHR47058	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 1..106
None	No IPR available	CDD	cd04479	RPA3	coord: 6..105 e-value: 2.29646E-21 score: 79.2293
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 6..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004152.1	MS004152.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding