MS004130 (gene) Bitter gourd (TR) v1

Overview
NameMS004130
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear pore complex protein NUP1-like isoform X1
Locationscaffold92: 246500 .. 246694 (+)
RNA-Seq ExpressionMS004130
SyntenyMS004130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTGCGCGAAAACAGAAAGTCCAAGCAGGTTTCGGAAAGGTTGGAAAATTTAAGGATGAAAAACTCCTTAGAAAATCGCCGCCGACTGATATTGGAACGTCTGGAAGTAATTCGTGGATCTTGAAGCTCGTTGATCCGGCGCAAAGGCCCATTTCCTCTGGTTCTCAGATGCTTTTTTCCTCCGTCTTC

mRNA sequence

ATGGCGACTGCGCGAAAACAGAAAGTCCAAGCAGGTTTCGGAAAGGTTGGAAAATTTAAGGATGAAAAACTCCTTAGAAAATCGCCGCCGACTGATATTGGAACGTCTGGAAGTAATTCGTGGATCTTGAAGCTCGTTGATCCGGCGCAAAGGCCCATTTCCTCTGGTTCTCAGATGCTTTTTTCCTCCGTCTTC

Coding sequence (CDS)

ATGGCGACTGCGCGAAAACAGAAAGTCCAAGCAGGTTTCGGAAAGGTTGGAAAATTTAAGGATGAAAAACTCCTTAGAAAATCGCCGCCGACTGATATTGGAACGTCTGGAAGTAATTCGTGGATCTTGAAGCTCGTTGATCCGGCGCAAAGGCCCATTTCCTCTGGTTCTCAGATGCTTTTTTCCTCCGTCTTC

Protein sequence

MATARKQKVQAGFGKVGKFKDEKLLRKSPPTDIGTSGSNSWILKLVDPAQRPISSGSQMLFSSVF
Homology
BLAST of MS004130 vs. NCBI nr
Match: XP_022997509.1 (nuclear pore complex protein NUP1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 1  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATAREQKSGEEEGLRTAGKFADKKFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. NCBI nr
Match: XP_022995174.1 (nuclear pore complex protein NUP1-like isoform X1 [Cucurbita maxima] >XP_022995962.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita maxima] >XP_022996722.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 1  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATAREQKSGEEEGLRTAGKFADKKFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. NCBI nr
Match: KAG7032030.1 (Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATARERKSREEEGLRTAGKFADKRFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. NCBI nr
Match: XP_022956529.1 (nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATARERKSREEEGLRTAGKFADKRFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. NCBI nr
Match: XP_023528157.1 (nuclear pore complex protein NUP1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          M TAR+QK   + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MVTAREQKSREEEGLRTAGKFADKRFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. ExPASy TrEMBL
Match: A0A6J1K2T4 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 1  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATAREQKSGEEEGLRTAGKFADKKFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. ExPASy TrEMBL
Match: A0A6J1KBI9 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 1  MATARKQK--VQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATAR+QK   + G    GKF D+K  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATAREQKSGEEEGLRTAGKFADKKFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. ExPASy TrEMBL
Match: A0A6J1GWT8 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATARERKSREEEGLRTAGKFADKRFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. ExPASy TrEMBL
Match: A0A6J1GZB0 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MATA--RKQKVQAGFGKVGKFKDEKLLRK-------SPPTDIGTSGSNSWILKLVDPAQR 60
          MATA  RK + + G    GKF D++  RK        PPT + TSG+NSWILKLVDPAQR
Sbjct: 1  MATARERKSREEEGLRTAGKFADKRFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDPAQR 60

Query: 61 PISSGSQMLFSSVF 66
           ISSGSQMLFSSVF
Sbjct: 61 LISSGSQMLFSSVF 74

BLAST of MS004130 vs. ExPASy TrEMBL
Match: A0A1S3BFS9 (nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489364 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 1  MATARKQK--------VQAGFGKVGKFKDEKLLRKS-------PPTDIGTSGSNSWILKL 60
          M TAR+QK         +   G VGKF DE+ ++KS       PP  I T+G+NSWILKL
Sbjct: 1  MVTARQQKNPEEKEEDEEERLGTVGKFIDERFVKKSPAKPYDRPPNGIRTTGNNSWILKL 60

Query: 61 VDPAQRPISSGSQMLFSSV 65
          VDPAQR ISSGS+MLFSSV
Sbjct: 61 VDPAQRLISSGSRMLFSSV 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022997509.12.7e-1263.51nuclear pore complex protein NUP1-like isoform X2 [Cucurbita maxima][more]
XP_022995174.12.7e-1263.51nuclear pore complex protein NUP1-like isoform X1 [Cucurbita maxima] >XP_0229959... [more]
KAG7032030.11.7e-1160.81Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022956529.11.7e-1160.81nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata][more]
XP_023528157.11.7e-1160.81nuclear pore complex protein NUP1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K2T41.3e-1263.51nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1KBI91.3e-1263.51nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1GWT88.4e-1260.81nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1GZB08.4e-1260.81nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 ... [more]
A0A1S3BFS92.7e-1055.70nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004130.1MS004130.1mRNA