MS004122 (gene) Bitter gourd (TR) v1

Overview
NameMS004122
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioninactive protein RESTRICTED TEV MOVEMENT 2
Locationscaffold92: 198625 .. 199437 (-)
RNA-Seq ExpressionMS004122
SyntenyMS004122
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTCGACAAGCAGCAATTTAAGTTTAGGGTTGATGAAGGGACACGGACGGTGGCGGTGACCGGAACTCGGAATGCGGGAAATAACAAATGGTTAAAATTGGATAAAACTTACCCAATTCCAGAAAATTGCTTAATCGACAAAATTGATGATAAATTTGAAGGGGGAATTCTAACCATTACAATGCCCAAACAAATTACCGGAGCAGAGACGGCGGCGGCGGCGGCGGAAACGGCGGTGGCGGCCCCGCCTCCCAAAGAACCAGAACAACCAACCCCTGAAATCTCGCCGGAAACAGCCGCCACGCCGGAGACAAAGACTGAAACTAAAGCGCCGGAGGAGGCTCTTCCAAAGGACGATTCTAATTCAGTGAAGCCAGCGGATGACGGTAAGGGAAAGTCTGCAGAACTCCAAAAGCAAGCCTCGGCGGGGGCCAAGGAAGAAGCTCCGCCGCAGGGCGCCGCCGCGGCTGAGAAGGGTCCGGCACAAGGAGATTCCGGCGAGCCGAAAACGACGTCGCAGGATGAGAAAATCGGTAGCCCAGATGAGAAGCCAACGGAGAAGAGAGAAATCGAAAATCAAAACCCAGAACAGGGGAAGGAATCCAAAACAGAGGAGGTGGTTAAGAATCAAGAAGAGCGCAAGGTTGGAACCGGAGCTCCATCTCCGACAGGGACCACGGCGGCGAAGTTTGCCCGCGGCGTCACGGTCGGAAGGATGCCGTCGCCGGCGATGGCGAGTCTGGCGGCGGCGACTGTGATCGCAGTGGCAGCGTACTTCGCATATGTTTATTACGGATTGCTCGTGACGAAA

mRNA sequence

GATTTCGACAAGCAGCAATTTAAGTTTAGGGTTGATGAAGGGACACGGACGGTGGCGGTGACCGGAACTCGGAATGCGGGAAATAACAAATGGTTAAAATTGGATAAAACTTACCCAATTCCAGAAAATTGCTTAATCGACAAAATTGATGATAAATTTGAAGGGGGAATTCTAACCATTACAATGCCCAAACAAATTACCGGAGCAGAGACGGCGGCGGCGGCGGCGGAAACGGCGGTGGCGGCCCCGCCTCCCAAAGAACCAGAACAACCAACCCCTGAAATCTCGCCGGAAACAGCCGCCACGCCGGAGACAAAGACTGAAACTAAAGCGCCGGAGGAGGCTCTTCCAAAGGACGATTCTAATTCAGTGAAGCCAGCGGATGACGGTAAGGGAAAGTCTGCAGAACTCCAAAAGCAAGCCTCGGCGGGGGCCAAGGAAGAAGCTCCGCCGCAGGGCGCCGCCGCGGCTGAGAAGGGTCCGGCACAAGGAGATTCCGGCGAGCCGAAAACGACGTCGCAGGATGAGAAAATCGGTAGCCCAGATGAGAAGCCAACGGAGAAGAGAGAAATCGAAAATCAAAACCCAGAACAGGGGAAGGAATCCAAAACAGAGGAGGTGGTTAAGAATCAAGAAGAGCGCAAGGTTGGAACCGGAGCTCCATCTCCGACAGGGACCACGGCGGCGAAGTTTGCCCGCGGCGTCACGGTCGGAAGGATGCCGTCGCCGGCGATGGCGAGTCTGGCGGCGGCGACTGTGATCGCAGTGGCAGCGTACTTCGCATATGTTTATTACGGATTGCTCGTGACGAAA

Coding sequence (CDS)

GATTTCGACAAGCAGCAATTTAAGTTTAGGGTTGATGAAGGGACACGGACGGTGGCGGTGACCGGAACTCGGAATGCGGGAAATAACAAATGGTTAAAATTGGATAAAACTTACCCAATTCCAGAAAATTGCTTAATCGACAAAATTGATGATAAATTTGAAGGGGGAATTCTAACCATTACAATGCCCAAACAAATTACCGGAGCAGAGACGGCGGCGGCGGCGGCGGAAACGGCGGTGGCGGCCCCGCCTCCCAAAGAACCAGAACAACCAACCCCTGAAATCTCGCCGGAAACAGCCGCCACGCCGGAGACAAAGACTGAAACTAAAGCGCCGGAGGAGGCTCTTCCAAAGGACGATTCTAATTCAGTGAAGCCAGCGGATGACGGTAAGGGAAAGTCTGCAGAACTCCAAAAGCAAGCCTCGGCGGGGGCCAAGGAAGAAGCTCCGCCGCAGGGCGCCGCCGCGGCTGAGAAGGGTCCGGCACAAGGAGATTCCGGCGAGCCGAAAACGACGTCGCAGGATGAGAAAATCGGTAGCCCAGATGAGAAGCCAACGGAGAAGAGAGAAATCGAAAATCAAAACCCAGAACAGGGGAAGGAATCCAAAACAGAGGAGGTGGTTAAGAATCAAGAAGAGCGCAAGGTTGGAACCGGAGCTCCATCTCCGACAGGGACCACGGCGGCGAAGTTTGCCCGCGGCGTCACGGTCGGAAGGATGCCGTCGCCGGCGATGGCGAGTCTGGCGGCGGCGACTGTGATCGCAGTGGCAGCGTACTTCGCATATGTTTATTACGGATTGCTCGTGACGAAA

Protein sequence

DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTITMPKQITGAETAAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKDDSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIGSPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGRMPSPAMASLAAATVIAVAAYFAYVYYGLLVTK
Homology
BLAST of MS004122 vs. NCBI nr
Match: XP_022150614.1 (inactive protein RESTRICTED TEV MOVEMENT 2 [Momordica charantia])

HSP 1 Score: 486.1 bits (1250), Expect = 2.0e-133
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI
Sbjct: 47  DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 106

Query: 61  TMPKQITGAET-AAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKD 120
           TMPKQITGAET AAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKD
Sbjct: 107 TMPKQITGAETAAAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKD 166

Query: 121 DSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIG 180
           DSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIG
Sbjct: 167 DSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIG 226

Query: 181 SPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGR 240
           SPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGR
Sbjct: 227 SPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGR 286

Query: 241 MPSPAMASLAAATVIAVAAYFAYVYYGLLVTK 272
           MPSPAMASLAAATVIAVAAYFAYVYYGLL TK
Sbjct: 287 MPSPAMASLAAATVIAVAAYFAYVYYGLLATK 318

BLAST of MS004122 vs. NCBI nr
Match: XP_038891748.1 (protein RESTRICTED TEV MOVEMENT 2-like [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 2.8e-47
Identity = 161/334 (48.20%), Postives = 191/334 (57.19%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           +F++   K +V++   TV VTG RN GNN+ L LDKTY IP+N  IDKI+ K + GILTI
Sbjct: 47  EFNEHHVKVKVEKEAGTVVVTGDRNMGNNRLLILDKTYSIPQNSQIDKIEHKLQDGILTI 106

Query: 61  TMPKQITGAETA--AAAAETAV----AAPP------------------------------ 120
           T+PKQIT   TA    AAE+      AAPP                              
Sbjct: 107 TIPKQITEPVTAPPLQAAESMAAPENAAPPETMAEINEPDAAALPKADSTPEKGREENSP 166

Query: 121 --------------------PKE---PEQPTPEISPETAATPETKTETKAPE-EALPKDD 180
                               PK+   PE+   EISPE AA PET  E+K P+  ALPKDD
Sbjct: 167 ENVALPEKKAEIKEPDAAALPKDDSSPEKGKEEISPEIAAPPETMAESKEPKAAALPKDD 226

Query: 181 SNSVKPADDGKGKSAELQKQASA-GAKEEAP-------PQGAAAAEKGPAQGDSGEPKTT 240
           S SVKP +   GKSAELQKQ S   AKEEAP       PQ  AAAEK P QGDSG+ +TT
Sbjct: 227 SYSVKPTEKNNGKSAELQKQDSVKAAKEEAPTPAPLVAPQ-PAAAEKDPVQGDSGKAETT 286

Query: 241 SQDEKIGSPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFA 267
           S D+KI SPD    + REIENQ+P++GK+SK+EEV KN+E  K+GTG PSP  T   K A
Sbjct: 287 S-DQKISSPD----QNREIENQDPKKGKDSKSEEVDKNEETAKIGTGTPSPRATKVGKLA 346

BLAST of MS004122 vs. NCBI nr
Match: XP_023551679.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-45
Identity = 147/270 (54.44%), Postives = 169/270 (62.59%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DF++Q  K +V++   TV VTG RN GNN+ L L+KTYPIP N +ID+I    + G+LTI
Sbjct: 47  DFNQQHVKVKVEKEAGTVVVTGGRNVGNNRLLILNKTYPIPRNSVIDRISHTLQDGVLTI 106

Query: 61  TMPKQITGAETAAAAAETAVAAPPPKEPEQPTPEISPE-----TAATPETKTETKAPE-E 120
           TMPKQ     T  AAA      P PKEPEQ TPE   E      +A PE   E K PE  
Sbjct: 107 TMPKQTAEPATPPAAAAPPTPTPLPKEPEQSTPEKGKEETPSAKSALPEMNGEIKEPEAA 166

Query: 121 ALPKDDSNSVKPADDGKGKSAELQKQASAGAKEE--APPQGAAAAEKGPAQGDSGEPKTT 180
           ALPKDDS+S     + KGKSAELQKQASA A EE   P   AAAAE+G  QGDSG+ +TT
Sbjct: 167 ALPKDDSSS----SNDKGKSAELQKQASAKANEETPTPTPAAAAAERGQVQGDSGKAETT 226

Query: 181 SQDEKIGSP-DEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKF 240
             D KI SP  +KPTEK+EIENQN E+G+ESKTEE  KN    K+    PSP  T   K 
Sbjct: 227 -LDRKISSPYQKKPTEKKEIENQNLEKGRESKTEEADKNVGTAKIDAVTPSPRTTRVGKL 286

Query: 241 ARGVTVGRMPSPAMASLAAATVIAVAAYFA 262
           A G TV RM      SL AA VIAVAAYFA
Sbjct: 287 AGGSTVRRMQLLTTVSLWAAVVIAVAAYFA 311

BLAST of MS004122 vs. NCBI nr
Match: XP_022968176.1 (proteoglycan 4 [Cucurbita maxima])

HSP 1 Score: 191.8 bits (486), Expect = 7.6e-45
Identity = 156/337 (46.29%), Postives = 184/337 (54.60%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DF++Q  K +V+EG RTV VTG R   NN+ L LDKTYPIP++C IDK+  K E G LTI
Sbjct: 47  DFNEQHVKVKVEEGARTVVVTGDRLLANNRLLILDKTYPIPQDCPIDKVHHKLEAGYLTI 106

Query: 61  TMPKQITGAETAAAAA--------------ETAV--AAPPPKEPEQPTP-----EISPET 120
           TMPKQ    E  A AA              ET    A PP KEPEQ TP     E SPE 
Sbjct: 107 TMPKQTAPPEAVATAAPKDPEQTTPEKGSEETTPENATPPQKEPEQNTPEKGSEETSPEN 166

Query: 121 A-----------------------ATPETK-----------TET---------KAPEEAL 180
           A                       ATP  K            ET         K PE+  
Sbjct: 167 ASPSQKEPEQTSLEKGSEETSPGNATPPPKGPKQTSVEKGSEETSPGNATPLPKEPEQTT 226

Query: 181 PKDDSNSVKPADDGKGKSAELQKQASAGAKEEAPPQG------AAAAEKGPAQGDSGEPK 240
           PK +S  + P ++ KGKSAELQK+ S  A+EEAP Q        AAA+ GP QG+SG+ K
Sbjct: 227 PKKESEEISPEEEDKGKSAELQKKGSVKAEEEAPTQAPTEVPPPAAAKNGPVQGESGKEK 286

Query: 241 TTSQDEKIGSPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAK 268
           TT  DEKI +P++KPTEK   ENQNPE+GKESKTE+V KN++  K+GTG PS   TT+ K
Sbjct: 287 TT-PDEKIKNPNQKPTEK---ENQNPEKGKESKTEKVGKNEKTGKIGTGTPSRKATTSKK 346

BLAST of MS004122 vs. NCBI nr
Match: KAG7032034.1 (Protein RESTRICTED TEV MOVEMENT 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-44
Identity = 147/272 (54.04%), Postives = 167/272 (61.40%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DF++Q  K +V++   TV VTG RN GNN+ L L+KTYPIP N LID+I    + G+LTI
Sbjct: 47  DFNQQHVKVKVEKEAGTVVVTGGRNVGNNRLLILNKTYPIPRNSLIDRISHTLQDGVLTI 106

Query: 61  TMPKQITGAETAAAAAETAVAAPPPKEPEQPT-----PEISPETAATPETKTETKAPE-E 120
           TMPKQ     T  AAA      P PKEPEQ T      E   E +A PE   E K PE  
Sbjct: 107 TMPKQTAEPATPPAAASPPTPTPLPKEPEQSTSEKGKEETPSEKSALPEMNGEIKEPEAA 166

Query: 121 ALPKDDSNSVKPADDGKGKSAELQKQASAGAKEE----APPQGAAAAEKGPAQGDSGEPK 180
           ALPKDDS+  K     KGKSAELQKQASA A EE     P   AAAAE+G  QGDSG+ +
Sbjct: 167 ALPKDDSSLSK----DKGKSAELQKQASAKANEETPTPTPAAAAAAAERGLVQGDSGKAE 226

Query: 181 TTSQDEKIGSPDE-KPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAA 240
           TT    KI SPD+ KPTEK+EIENQN E+G+ESKTEE  KN    K+    PSP  T   
Sbjct: 227 TTLY-RKISSPDQKKPTEKKEIENQNLEKGRESKTEEADKNVGTAKIDAVTPSPRTTIVG 286

Query: 241 KFARGVTVGRMPSPAMASLAAATVIAVAAYFA 262
           K A G TV RM      SL AA VIAVAAYFA
Sbjct: 287 KLAGGSTVRRMQLLTTVSLWAAVVIAVAAYFA 313

BLAST of MS004122 vs. ExPASy Swiss-Prot
Match: D9UBX6 (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.8e-04
Identity = 64/222 (28.83%), Postives = 109/222 (49.10%), Query Frame = 0

Query: 2   FDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTIT 61
           F K+Q K      ++ + VTG R   N KW + ++ + +P+NCL+DKI   F+  +LTIT
Sbjct: 41  FAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTIT 100

Query: 62  MPKQITGAETAAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKDDS 121
           MPK+               AA   K  +     +  E+    + + E K  ++ L ++  
Sbjct: 101 MPKETITKVAYLPETSRTEAAALEKAAKLEEKRLLEESRRKEKEEEEAKQMKKQLLEEKE 160

Query: 122 NSV-KPADDGKGK-SAELQK-QASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKI 181
             + K  ++ K K  AE++K Q  A AKEE      AAA+K     +  E K   ++ K+
Sbjct: 161 ALIRKLQEEAKAKEEAEMRKLQEEAKAKEE------AAAKK---LQEEIEAKEKLEERKL 220

Query: 182 GSPDEKPTEKREIENQN-PEQGKESKTEE---VVKNQEERKV 217
              +E+  E+R++E+ N  E+ K  K +E   V ++ E+ K+
Sbjct: 221 ---EERRLEERKLEDMNLAEEAKLKKIQERKSVDESGEKEKI 250

BLAST of MS004122 vs. ExPASy TrEMBL
Match: A0A6J1DAL2 (inactive protein RESTRICTED TEV MOVEMENT 2 OS=Momordica charantia OX=3673 GN=LOC111018709 PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 9.5e-134
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI
Sbjct: 47  DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 106

Query: 61  TMPKQITGAET-AAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKD 120
           TMPKQITGAET AAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKD
Sbjct: 107 TMPKQITGAETAAAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKD 166

Query: 121 DSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIG 180
           DSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIG
Sbjct: 167 DSNSVKPADDGKGKSAELQKQASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIG 226

Query: 181 SPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGR 240
           SPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGR
Sbjct: 227 SPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGR 286

Query: 241 MPSPAMASLAAATVIAVAAYFAYVYYGLLVTK 272
           MPSPAMASLAAATVIAVAAYFAYVYYGLL TK
Sbjct: 287 MPSPAMASLAAATVIAVAAYFAYVYYGLLATK 318

BLAST of MS004122 vs. ExPASy TrEMBL
Match: A0A6J1HU50 (proteoglycan 4 OS=Cucurbita maxima OX=3661 GN=LOC111467490 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-45
Identity = 156/337 (46.29%), Postives = 184/337 (54.60%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DF++Q  K +V+EG RTV VTG R   NN+ L LDKTYPIP++C IDK+  K E G LTI
Sbjct: 47  DFNEQHVKVKVEEGARTVVVTGDRLLANNRLLILDKTYPIPQDCPIDKVHHKLEAGYLTI 106

Query: 61  TMPKQITGAETAAAAA--------------ETAV--AAPPPKEPEQPTP-----EISPET 120
           TMPKQ    E  A AA              ET    A PP KEPEQ TP     E SPE 
Sbjct: 107 TMPKQTAPPEAVATAAPKDPEQTTPEKGSEETTPENATPPQKEPEQNTPEKGSEETSPEN 166

Query: 121 A-----------------------ATPETK-----------TET---------KAPEEAL 180
           A                       ATP  K            ET         K PE+  
Sbjct: 167 ASPSQKEPEQTSLEKGSEETSPGNATPPPKGPKQTSVEKGSEETSPGNATPLPKEPEQTT 226

Query: 181 PKDDSNSVKPADDGKGKSAELQKQASAGAKEEAPPQG------AAAAEKGPAQGDSGEPK 240
           PK +S  + P ++ KGKSAELQK+ S  A+EEAP Q        AAA+ GP QG+SG+ K
Sbjct: 227 PKKESEEISPEEEDKGKSAELQKKGSVKAEEEAPTQAPTEVPPPAAAKNGPVQGESGKEK 286

Query: 241 TTSQDEKIGSPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPTGTTAAK 268
           TT  DEKI +P++KPTEK   ENQNPE+GKESKTE+V KN++  K+GTG PS   TT+ K
Sbjct: 287 TT-PDEKIKNPNQKPTEK---ENQNPEKGKESKTEKVGKNEKTGKIGTGTPSRKATTSKK 346

BLAST of MS004122 vs. ExPASy TrEMBL
Match: A0A6J1G164 (proteoglycan 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.5e-42
Identity = 141/307 (45.93%), Postives = 173/307 (56.35%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DF++Q  K +V+EG RTV VTG R    N+ L L+KTYPIP++C IDK+  K E G L I
Sbjct: 47  DFNEQHVKVKVEEGARTVVVTGDRLLATNRLLILNKTYPIPQDCSIDKVHHKLEAGFLII 106

Query: 61  TMPKQIT-----------GAETAAAAAETAVAAPPPKEPEQPTP-----EISPETAATP- 120
           TMPKQ               E  +       A PP KEPEQ TP     E SP  A+ P 
Sbjct: 107 TMPKQTAPPAAPKDPEQKTPEKGSEETTPENATPPQKEPEQKTPEKGSEETSPGNASPPP 166

Query: 121 ----ETKTE--------------TKAPEEALPKDDSNSVKPADDGKGKSAELQKQASAGA 180
               +T  E               K PE+   K +S  + P +D KGKSAELQK+ S  A
Sbjct: 167 KGPKQTSLEKGGEETSPGNATPPPKEPEQTTRKKESEEISPEED-KGKSAELQKKGSVKA 226

Query: 181 KEEAPPQG------AAAAEKGPAQGDSGEPKTTSQDEKIGSPDEKPTEKREIENQNPEQG 240
            EEAP          AAA+ GP +G+SG+ KTT  DEKI +P++KPTEK   ENQNPE+G
Sbjct: 227 GEEAPTPAPTEVPPPAAAKNGPVRGESGKEKTT-PDEKIKNPNQKPTEK---ENQNPEKG 286

Query: 241 KESKTEEVVKNQEERKVGTGAPSPTGTTAAKFARGVTVGRMPSPAMASLAAATVIAVAAY 267
           KESKTE+V KN++  K+GTG PS   TT  K+A G T  R   P  AS+AAA V   AAY
Sbjct: 287 KESKTEKVGKNEKTGKIGTGTPSQKATTGKKYAAGFTNTRRVLPVTASVAAAVVTVAAAY 346

BLAST of MS004122 vs. ExPASy TrEMBL
Match: A0A6J1G142 (proteoglycan 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.7e-38
Identity = 144/355 (40.56%), Postives = 174/355 (49.01%), Query Frame = 0

Query: 1   DFDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTI 60
           DF++Q  K +V+EG RTV VTG R    N+ L L+KTYPIP++C IDK+  K E G L I
Sbjct: 47  DFNEQHVKVKVEEGARTVVVTGDRLLATNRLLILNKTYPIPQDCSIDKVHHKLEAGFLII 106

Query: 61  TMPKQIT-----------GAETAAAAAETAVAAPPPKEPEQPTP-----EISPETAA--- 120
           TMPKQ               E  +       A PP KEPEQ TP     E SPE A+   
Sbjct: 107 TMPKQTAPPAAPKDPEQKTPEKGSEETTPENATPPQKEPEQKTPEKGSGETSPENASPLQ 166

Query: 121 -TPETKTETKAPEEALP------------------------------------------- 180
             PE KT  K  EE  P                                           
Sbjct: 167 KEPEQKTPEKGSEETSPGNASPPPKGPKQTSLKKGSEETSPGNASPPPKGPKQTSLEKGG 226

Query: 181 --------------------KDDSNSVKPADDGKGKSAELQKQASAGAKEEAPPQG---- 240
                               K +S  + P +D KGKSAELQK+ S  A EEAP       
Sbjct: 227 EETSPGNATPPPKEPEQTTRKKESEEISPEED-KGKSAELQKKGSVKAGEEAPTPAPTEV 286

Query: 241 --AAAAEKGPAQGDSGEPKTTSQDEKIGSPDEKPTEKREIENQNPEQGKESKTEEVVKNQ 267
              AAA+ GP +G+SG+ KTT  DEKI +P++KPTEK   ENQNPE+GKESKTE+V KN+
Sbjct: 287 PPPAAAKNGPVRGESGKEKTT-PDEKIKNPNQKPTEK---ENQNPEKGKESKTEKVGKNE 346

BLAST of MS004122 vs. ExPASy TrEMBL
Match: A0A1S3BFR5 (neurofilament heavy polypeptide-like OS=Cucumis melo OX=3656 GN=LOC103489354 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 133/342 (38.89%), Postives = 164/342 (47.95%), Query Frame = 0

Query: 3   DKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTITM 62
           D +     V+   RTV VTG R+  N + L L+KT+PIP+NC  D ++ K + G+LTIT+
Sbjct: 46  DFEHVNVNVEREARTVVVTGDRHVSNTRLLILNKTFPIPQNCKSDGVEHKLQDGVLTITI 105

Query: 63  PKQITGAETAAAAAETAVAAPPP------------------------------------- 122
            KQIT   TA         APP                                      
Sbjct: 106 LKQITEPVTAPPLQAAESTAPPETKAENKEPDTAALTKSESVPDKAKEEISSANVSPPET 165

Query: 123 ----KEPE------QPTP-----EISPETAATPETKTETKAPEEALPKDDSNSVKPADD- 182
               KEPE      + TP     EIS   A+ PETK E K P  ALPKDDS   K  +D 
Sbjct: 166 KAKIKEPEAALTKSESTPDKAKEEISSANASPPETKAEIKEPAAALPKDDSTPEKGREDI 225

Query: 183 ------------------------GKGKSAELQKQASAGA-KEEAPPQGAAAAEKGPAQG 242
                                    +GKSA LQKQ SA A KEEAP      A + PA  
Sbjct: 226 SPGNVAPPESKEAIKEPKAAALPKDEGKSAALQKQGSAKATKEEAPTPAPLVASQPPADR 285

Query: 243 DSGEPKTTSQDEKIGSPDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKVGTGAPSPT 267
           + G+ +TT  D  I S +    + +EIENQNPE+GKESKTEEV KN+E  ++GTG PSP 
Sbjct: 286 NYGKEETT-LDHNINSQE----KSKEIENQNPEKGKESKTEEVRKNEETAEIGTGTPSPR 345

BLAST of MS004122 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 5.2e-07
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 0

Query: 2   FDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTIT 61
           F K+Q K +V   TR + V G R AG NKW++  K +PIP N  +D +  KFEG  L + 
Sbjct: 39  FRKEQLKVQVTT-TRKLRVMGDRPAGANKWIRFRKEFPIPPNIDVDSVSAKFEGANLVVR 98

Query: 62  MPK-QITGAETAAAAAETAVAAPPPKEPEQPTPEISPETAATPETK-TETKAPEEALPKD 121
           +P+ +  G + +     T     P + P  P+P    +     ET+  ET+  ++A   +
Sbjct: 99  LPRTEPMGKQPSPIGTATKPPPVPKENPNLPSPSAKEKVQPPKETRENETELEKQA---E 158

Query: 122 DSNSVKPADDGK 132
              S KPA + +
Sbjct: 159 KIQSPKPARENE 166

BLAST of MS004122 vs. TAIR 10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 8.2e-05
Identity = 57/216 (26.39%), Postives = 98/216 (45.37%), Query Frame = 0

Query: 2   FDKQQFKFRVDEGTRTVAVTGTRNAGNNKWLKLDKTYPIPENCLIDKIDDKFEGGILTIT 61
           F K+Q K      ++ + VTG R   N KW + ++ + +P+NCL+DKI   F+  +LTIT
Sbjct: 41  FAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFTVPQNCLVDKIHGSFKNNVLTIT 100

Query: 62  MPKQITGAETAAAAAETAVAAPPPKEPEQPTPEISPETAATPETKTETKAPEEALPKDDS 121
           MPK+               AA   K  +     +  E+    + + E K  ++ L ++  
Sbjct: 101 MPKETITKVAYLPETSRTEAAALEKAAKLEEKRLLEESRRKEKEEEEAKQMKKQLLEE-- 160

Query: 122 NSVKPADDGKGKSAELQK-QASAGAKEEAPPQGAAAAEKGPAQGDSGEPKTTSQDEKIGS 181
                      K A ++K Q  A AKEEA  +     E+  A+ ++   K   + E    
Sbjct: 161 -----------KEALIRKLQEEAKAKEEA--EMRKLQEEAKAKEEAAAKKLQEEIEAKEK 220

Query: 182 PDEKPTEKREIENQNPEQGKESKTEEVVKNQEERKV 217
            +E+  E+R +E +  E  K ++  ++ K QE + V
Sbjct: 221 LEERKLEERRLEERKLEDMKLAEEAKLKKIQERKSV 241

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150614.12.0e-13399.26inactive protein RESTRICTED TEV MOVEMENT 2 [Momordica charantia][more]
XP_038891748.12.8e-4748.20protein RESTRICTED TEV MOVEMENT 2-like [Benincasa hispida][more]
XP_023551679.11.5e-4554.44inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita pepo subsp. pepo][more]
XP_022968176.17.6e-4546.29proteoglycan 4 [Cucurbita maxima][more]
KAG7032034.11.7e-4454.04Protein RESTRICTED TEV MOVEMENT 2, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
D9UBX66.8e-0428.83Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
Match NameE-valueIdentityDescription
A0A6J1DAL29.5e-13499.26inactive protein RESTRICTED TEV MOVEMENT 2 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1HU503.7e-4546.29proteoglycan 4 OS=Cucurbita maxima OX=3661 GN=LOC111467490 PE=3 SV=1[more]
A0A6J1G1648.5e-4245.93proteoglycan 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=... [more]
A0A6J1G1429.7e-3840.56proteoglycan 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449725 PE=3 SV=... [more]
A0A1S3BFR53.6e-3238.89neurofilament heavy polypeptide-like OS=Cucumis melo OX=3656 GN=LOC103489354 PE=... [more]
Match NameE-valueIdentityDescription
AT2G27140.15.2e-0731.82HSP20-like chaperones superfamily protein [more]
AT5G04890.18.2e-0526.39HSP20-like chaperones superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 1..66
e-value: 4.3E-7
score: 31.8
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 3..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..135
NoneNo IPR availablePANTHERPTHR43670:SF33HSP20-LIKE CHAPERONES SUPERFAMILY PROTEINcoord: 2..215
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 2..64
e-value: 7.02094E-6
score: 41.3857
IPR045045Small heat shock protein RTM2-likePANTHERPTHR43670HEAT SHOCK PROTEIN 26coord: 2..215
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 1..79
score: 12.824421

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004122.1MS004122.1mRNA