MS004100 (gene) Bitter gourd (TR) v1

Overview
NameMS004100
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold92: 65795 .. 66308 (-)
RNA-Seq ExpressionMS004100
SyntenyMS004100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGCTTCTTCTGCTCCTCTCTGCTCCTTCCATTTCCGCAGTCCGTCTTCTTGGCGGCGAAGGCCAGCGGCGGACCACCGCAGAGCGCCGAGATGCCACAGCGGCGTCAGCGACGATGAAGGTCTCAGGCCTGTGACTGTGTGTAATATCGATCGGCGATCTCTTTATAGTTCATTAATGCATAATGTTCTGTTTTGTGCGTTCTGCAGAAAACCAGAAGGACATCGTGGAGGCGAACTTGACGGTGTTGAGAGAGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGCGAGTGGCGGAAGAATCGAATTCGATAATTGCTGGAGCTACCTGTCGAGGAGCGATGCGAAATTGGATCGCGATTGTGAGCGGAAGATGGTGAAGAATTTTGCCCTAATTTCAGAGTGCTTGGAGGTGATTTCTATGGCTGGTGGTGCAGTTGGACTCGTTCTTGTTGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTCCTGATTCGTCATCTAAGT

mRNA sequence

ACGGCTTCTTCTGCTCCTCTCTGCTCCTTCCATTTCCGCAGTCCGTCTTCTTGGCGGCGAAGGCCAGCGGCGGACCACCGCAGAGCGCCGAGATGCCACAGCGGCGTCAGCGACGATGAAGAAAACCAGAAGGACATCGTGGAGGCGAACTTGACGGTGTTGAGAGAGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGCGAGTGGCGGAAGAATCGAATTCGATAATTGCTGGAGCTACCTGTCGAGGAGCGATGCGAAATTGGATCGCGATTGTGAGCGGAAGATGGTGAAGAATTTTGCCCTAATTTCAGAGTGCTTGGAGGTGATTTCTATGGCTGGTGGTGCAGTTGGACTCGTTCTTGTTGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTCCTGATTCGTCATCTAAGT

Coding sequence (CDS)

ACGGCTTCTTCTGCTCCTCTCTGCTCCTTCCATTTCCGCAGTCCGTCTTCTTGGCGGCGAAGGCCAGCGGCGGACCACCGCAGAGCGCCGAGATGCCACAGCGGCGTCAGCGACGATGAAGAAAACCAGAAGGACATCGTGGAGGCGAACTTGACGGTGTTGAGAGAGAGAATGGAGGATTTGAGGAAGAAGGAGCGGCGGATTCCGGCGAGTGGCGGAAGAATCGAATTCGATAATTGCTGGAGCTACCTGTCGAGGAGCGATGCGAAATTGGATCGCGATTGTGAGCGGAAGATGGTGAAGAATTTTGCCCTAATTTCAGAGTGCTTGGAGGTGATTTCTATGGCTGGTGGTGCAGTTGGACTCGTTCTTGTTGGTGGATCTTTAGGCATCTGTTTGGTTTCTCTCCTGATTCGTCATCTAAGT

Protein sequence

TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDLRKKERRIPASGGRIEFDNCWSYLSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAVGLVLVGGSLGICLVSLLIRHLS
Homology
BLAST of MS004100 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 280.4 bits (716), Expect = 8.5e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMED 60
           TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMED
Sbjct: 4   TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMED 63

Query: 61  LRKKERRIPASGGRIEFDNCWSYLSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAV 120
           LRKKERRIPASGGRIEFDNCWSY+SRSDAKLDRDCERKMVKNFALISECLEVISMAGGAV
Sbjct: 64  LRKKERRIPASGGRIEFDNCWSYMSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAV 123

Query: 121 GLVLVGGSLGICLVSLLIRHLS 143
           GLVLVGGSLGICLVSLLIRHLS
Sbjct: 124 GLVLVGGSLGICLVSLLIRHLS 145

BLAST of MS004100 vs. NCBI nr
Match: XP_038893300.1 (uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-41
Identity = 100/141 (70.92%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 3   SSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDLR 62
           +SA   SFHF SP S RRRP +DHRRAPRCH GV  DEENQKDIV+ANLTVLR RMEDLR
Sbjct: 2   ASARFPSFHFHSPVSTRRRP-SDHRRAPRCHGGVG-DEENQKDIVDANLTVLRARMEDLR 61

Query: 63  KKERRI--PASGGRIEFDNCWSYLSRSD-AKLDRDCERKMVKNFALISECLEVISMAGGA 122
           KKERRI  PA  G +EFDN W YLS SD AK DR  + K++K FALI+ CLEV++  GGA
Sbjct: 62  KKERRIPLPARRGGLEFDNGWRYLSMSDGAKFDRSFDGKILKKFALIAGCLEVVTTVGGA 121

Query: 123 VGLVLVGGSLGICLVSLLIRH 141
           VGLV VGGSLGICLV+LL+RH
Sbjct: 122 VGLVFVGGSLGICLVALLVRH 140

BLAST of MS004100 vs. NCBI nr
Match: XP_011655810.1 (uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical protein Csa_008386 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.0e-32
Identity = 91/143 (63.64%), Postives = 102/143 (71.33%), Query Frame = 0

Query: 3   SSAPLCSFH-FRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 62
           +SAPL SFH F +PSS RRRP +DHR APRCH G + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCH-GRAGDEENEKDIVEANLTVLRTRMEDL 61

Query: 63  RKKERRIP---ASGGRIEFDNCWSYLSRSDAKLDRDC-ERKMVKNFALISECLEVISMAG 122
           RKKER IP      G  E D+   YL     KLD  C + K +KN  LIS CLEV+S  G
Sbjct: 62  RKKERGIPIQIRQRGMEELDDGGRYL----WKLDGGCFDGKKMKNCGLISGCLEVVSRVG 121

Query: 123 GAVGLVLVGGSLGICLVSLLIRH 141
           GAVGLV VGGSLGIC VS ++RH
Sbjct: 122 GAVGLVFVGGSLGICFVSFIVRH 139

BLAST of MS004100 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 uncharacterized protein E6C27_scaffold65G006220 [Cucumis melo var. makuwa] >TYK09158.1 uncharacterized protein E5676_scaffold475G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-32
Identity = 92/145 (63.45%), Postives = 104/145 (71.72%), Query Frame = 0

Query: 2   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS  + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSR-AGDEENEKDIVEANLTVLRTRMEDL 61

Query: 62  RKKERRIP-----ASGGRIEFDNCWSYLSRSDAKLDRDC-ERKMVKNFALISECLEVISM 121
           RKKERRIP        G  EFD+   YLS   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121

Query: 122 AGGAVGLVLVGGSLGICLVSLLIRH 141
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 122 VGGAVGLVFVGGSLGICLVSFIVRH 142

BLAST of MS004100 vs. NCBI nr
Match: KAG7032048.1 (hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-26
Identity = 73/107 (68.22%), Postives = 80/107 (74.77%), Query Frame = 0

Query: 12  FRSPSSWRRRPAADHRRAPRCHSGVSDD--EENQKDIVEANLTVLRERMEDLRKKERRIP 71
           F +PS WRRRP +DHRRAPRCH GV D+    NQKDIVEANLTVL+ RMEDLRKKERRIP
Sbjct: 14  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIP 73

Query: 72  ASG--GRIEFDNCWSYLSRSDAKLDRDCERKMVKNFALISECLEVIS 115
                G +E DN W Y S  DAKLD    RK+VKNFALIS CLEV+S
Sbjct: 74  LPKRLGGVEIDNGWRYRSTRDAKLD----RKVVKNFALISGCLEVMS 115

BLAST of MS004100 vs. ExPASy TrEMBL
Match: A0A6J1D9Z1 (uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018723 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMED 60
           TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMED
Sbjct: 4   TASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMED 63

Query: 61  LRKKERRIPASGGRIEFDNCWSYLSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAV 120
           LRKKERRIPASGGRIEFDNCWSY+SRSDAKLDRDCERKMVKNFALISECLEVISMAGGAV
Sbjct: 64  LRKKERRIPASGGRIEFDNCWSYMSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAV 123

Query: 121 GLVLVGGSLGICLVSLLIRHLS 143
           GLVLVGGSLGICLVSLLIRHLS
Sbjct: 124 GLVLVGGSLGICLVSLLIRHLS 145

BLAST of MS004100 vs. ExPASy TrEMBL
Match: A0A0A0KRA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 91/143 (63.64%), Postives = 102/143 (71.33%), Query Frame = 0

Query: 3   SSAPLCSFH-FRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 62
           +SAPL SFH F +PSS RRRP +DHR APRCH G + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCH-GRAGDEENEKDIVEANLTVLRTRMEDL 61

Query: 63  RKKERRIP---ASGGRIEFDNCWSYLSRSDAKLDRDC-ERKMVKNFALISECLEVISMAG 122
           RKKER IP      G  E D+   YL     KLD  C + K +KN  LIS CLEV+S  G
Sbjct: 62  RKKERGIPIQIRQRGMEELDDGGRYL----WKLDGGCFDGKKMKNCGLISGCLEVVSRVG 121

Query: 123 GAVGLVLVGGSLGICLVSLLIRH 141
           GAVGLV VGGSLGIC VS ++RH
Sbjct: 122 GAVGLVFVGGSLGICFVSFIVRH 139

BLAST of MS004100 vs. ExPASy TrEMBL
Match: A0A5A7SXL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001490 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 92/145 (63.45%), Postives = 104/145 (71.72%), Query Frame = 0

Query: 2   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS  + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSR-AGDEENEKDIVEANLTVLRTRMEDL 61

Query: 62  RKKERRIP-----ASGGRIEFDNCWSYLSRSDAKLDRDC-ERKMVKNFALISECLEVISM 121
           RKKERRIP        G  EFD+   YLS   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121

Query: 122 AGGAVGLVLVGGSLGICLVSLLIRH 141
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 122 VGGAVGLVFVGGSLGICLVSFIVRH 142

BLAST of MS004100 vs. ExPASy TrEMBL
Match: A0A1S3BFP0 (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 92/145 (63.45%), Postives = 104/145 (71.72%), Query Frame = 0

Query: 2   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS  + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSR-AGDEENEKDIVEANLTVLRTRMEDL 61

Query: 62  RKKERRIP-----ASGGRIEFDNCWSYLSRSDAKLDRDC-ERKMVKNFALISECLEVISM 121
           RKKERRIP        G  EFD+   YLS   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121

Query: 122 AGGAVGLVLVGGSLGICLVSLLIRH 141
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 122 VGGAVGLVFVGGSLGICLVSFIVRH 142

BLAST of MS004100 vs. ExPASy TrEMBL
Match: A0A1Q3D7T7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31944 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 0

Query: 30  PRCHSGVSDDEENQKDIVEANLTVLRERMEDLRKKER----RIPASGGRIEFDNCWSYLS 89
           P+  S    DE N  +IV+ANL+ L ER+ ++RKKE     R+    G+++  N W+Y S
Sbjct: 24  PQVRSHSFRDEGNSANIVDANLSTLWERIAEVRKKESLDCCRLKKEEGKLK--NGWNYQS 83

Query: 90  RSDAKLDRDCERKMVKNFALISECLEVISMAGGAVGLVLVGGSLGICLVSLLI 139
             D    RD         A++SE +E+I    GA+G+V++ GSL ICLVSLL+
Sbjct: 84  GYDHNRKRD---------AMMSESMELIGFVSGALGMVILSGSLCICLVSLLV 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150638.18.5e-7299.30uncharacterized protein LOC111018723 [Momordica charantia][more]
XP_038893300.16.0e-4170.92uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida][more]
XP_011655810.13.0e-3263.64uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical ... [more]
XP_008446686.13.9e-3263.45PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 unc... [more]
KAG7032048.15.4e-2668.22hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D9Z14.1e-7299.30uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A0A0KRA61.4e-3263.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1[more]
A0A5A7SXL41.9e-3263.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BFP01.9e-3263.45uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=... [more]
A0A1Q3D7T71.6e-0739.82Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31944 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40
NoneNo IPR availablePANTHERPTHR38225:SF3SUBFAMILY NOT NAMEDcoord: 7..140
NoneNo IPR availablePANTHERPTHR38225PROTEIN, PUTATIVE-RELATEDcoord: 7..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004100.1MS004100.1mRNA