MS004050 (gene) Bitter gourd (TR) v1

Overview


Name	MS004050
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	scaffold1597: 773897 .. 774095 (-)
RNA-Seq Expression	MS004050
Synteny	MS004050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATTTGTGGCGTCAATTTATAAGGTTTGTTATTTTTCTAATTTCTTCATTAGCAGAAATGAGATAGATTACCTCTTGATTTACCATATGTAGAAGAAGAGTTAGTAGCGGGTTATCAAATTATCGAGTATTTGGATATCAAATTTGGTTTATTTTATGTAATGTACTTTATCTACTGGATTATCGGGGGAGCATTT

mRNA sequence

TGGAATTTGTGGCGTCAATTTATAAGGTTTGTTATTTTTCTAATTTCTTCATTAGCAGAAGATAGATTACCTCTTGATTTACCATATGTAGAAGAAGAGTTAGTAGCGGGTTATCAAATTATCGAGTATTTGGATATCAAATTTGGTTTATTTTATGTAATGTACTTTATCTACTGGATTATCGGGGGAGCATTT

Coding sequence (CDS)

TGGAATTTGTGGCGTCAATTTATAAGGTTTGTTATTTTTCTAATTTCTTCATTAGCAGAAGATAGATTACCTCTTGATTTACCATATGTAGAAGAAGAGTTAGTAGCGGGTTATCAAATTATCGAGTATTTGGATATCAAATTTGGTTTATTTTATGTAATGTACTTTATCTACTGGATTATCGGGGGAGCATTT

Protein sequence

WNLWRQFIRFVIFLISSLAEDRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYWIIGGAF

Homology

[Close]

BLAST of MS004050 vs. NCBI nr
Match: QRI59730.1 (NADH dehydrogenase subunit 1 [Dahlstedtia araripensis])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F++FLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFY+ Y++  
Sbjct: 206 WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYIAYYLNL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

[Close]

BLAST of MS004050 vs. NCBI nr
Match: KAF2546772.1 (hypothetical protein F2Q70_00023480, partial [Brassica cretica])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEEL+AGYQ  EY DIKFGLFYV  ++  
Sbjct: 55  WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ-TEYSDIKFGLFYVASYLNL 114

Query: 61  IIGGAF 66
           +I   F
Sbjct: 115 LISSLF 119

[Close]

BLAST of MS004050 vs. NCBI nr
Match: YP_009770397.1 (NdhA [Umtiza listeriana] >QIT01099.1 NdhA [Umtiza listeriana])

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F++FLISSLAE +RLP DLP  EEELVAGYQ  EY DIKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSDIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           ++   F
Sbjct: 266 LVSSLF 270

[Close]

BLAST of MS004050 vs. NCBI nr
Match: EFH39558.1 (NADH-plastoquinone oxidoreductase subunit 1 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-11
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEEL+AGYQ IEY  IKFGLFYV  ++  
Sbjct: 207 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ-IEYSGIKFGLFYVASYLNL 266

Query: 61  IIGGAF 66
           +I   F
Sbjct: 267 LISSLF 271

[Close]

BLAST of MS004050 vs. NCBI nr
Match: YP_010044959.1 (NADH-plastoquinone oxidoreductase subunit 1 [Dianyuea turbinata] >QPF96097.1 NADH-plastoquinone oxidoreductase subunit 1 [Dianyuea turbinata])

HSP 1 Score: 76.6 bits (187), Expect = 8.6e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV+ ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVVSYLNL 265

Query: 61  IIGGAF 66
           ++   F
Sbjct: 266 LVSSLF 270

[Close]

BLAST of MS004050 vs. ExPASy Swiss-Prot
Match: A4QK75 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabis hirsuta OX=78191 GN=ndhA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEEL+AGYQ  EY  IKFGLFYV  +I  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ-TEYSGIKFGLFYVASYINL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

[Close]

BLAST of MS004050 vs. ExPASy Swiss-Prot
Match: A4QJH1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema cordifolium OX=434059 GN=ndhA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

[Close]

BLAST of MS004050 vs. ExPASy Swiss-Prot
Match: A4QJQ5 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=ndhA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

[Close]

BLAST of MS004050 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I FVIFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFVIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           ++   F
Sbjct: 266 LVSSLF 270

[Close]

BLAST of MS004050 vs. ExPASy Swiss-Prot
Match: Q37165 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhA PE=3 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-13
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEEL+AGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

[Close]

BLAST of MS004050 vs. ExPASy TrEMBL
Match: A0A6H0EHY6 (NADH-quinone oxidoreductase subunit H OS=Umtiza listeriana OX=162936 GN=ndhA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F++FLISSLAE +RLP DLP  EEELVAGYQ  EY DIKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSDIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           ++   F
Sbjct: 266 LVSSLF 270

[Close]

BLAST of MS004050 vs. ExPASy TrEMBL
Match: D7MVL9 (NADH-plastoquinone oxidoreductase subunit 1 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_333071 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEEL+AGYQ IEY  IKFGLFYV  ++  
Sbjct: 207 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ-IEYSGIKFGLFYVASYLNL 266

Query: 61  IIGGAF 66
           +I   F
Sbjct: 267 LISSLF 271

[Close]

BLAST of MS004050 vs. ExPASy TrEMBL
Match: A0A7S9DE62 (NADH-plastoquinone oxidoreductase subunit 1 OS=Dianyuea turbinata OX=1839802 GN=ndhA PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV+ ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVVSYLNL 265

Query: 61  IIGGAF 66
           ++   F
Sbjct: 266 LVSSLF 270

[Close]

BLAST of MS004050 vs. ExPASy TrEMBL
Match: A0A218KGA1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=ndhA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I FVIFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFVIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           ++   F
Sbjct: 266 LVSSLF 270

[Close]

BLAST of MS004050 vs. ExPASy TrEMBL
Match: A0A0G3F3B7 (NADH-quinone oxidoreductase subunit H OS=Rosmarinus officinalis OX=39367 GN=ndhA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEELVAGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

[Close]

BLAST of MS004050 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   WNLWRQFIRFVIFLISSLAE-DRLPLDLPYVEEELVAGYQIIEYLDIKFGLFYVMYFIYW 60
           WNLWRQ I F+IFLISSLAE +RLP DLP  EEEL+AGYQ  EY  IKFGLFYV  ++  
Sbjct: 206 WNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ-TEYSGIKFGLFYVASYLNL 265

Query: 61  IIGGAF 66
           +I   F
Sbjct: 266 LISSLF 270

The following BLAST results are available for this feature:

BLAST of MS004050 vs. NCBI nr


Match Name	E-value	Identity	Description
QRI59730.1	1.7e-11	65.15	NADH dehydrogenase subunit 1 [Dahlstedtia araripensis]	[more]
KAF2546772.1	2.3e-11	66.67	hypothetical protein F2Q70_00023480, partial [Brassica cretica]	[more]
YP_009770397.1	2.9e-11	65.15	NdhA [Umtiza listeriana] >QIT01099.1 NdhA [Umtiza listeriana]	[more]
EFH39558.1	3.9e-11	66.67	NADH-plastoquinone oxidoreductase subunit 1 [Arabidopsis lyrata subsp. lyrata]	[more]
YP_010044959.1	8.6e-11	65.15	NADH-plastoquinone oxidoreductase subunit 1 [Dianyuea turbinata] >QPF96097.1 NAD...	[more]

BLAST of MS004050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QK75	1.1e-13	66.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabis hirsuta OX=781...	[more]
A4QJH1	1.5e-13	66.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema cordifoliu...	[more]
A4QJQ5	1.5e-13	66.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema grandiflor...	[more]
Q2QD36	1.5e-13	66.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q37165	1.9e-13	65.15	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of MS004050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EHY6	1.4e-11	65.15	NADH-quinone oxidoreductase subunit H OS=Umtiza listeriana OX=162936 GN=ndhA PE=...	[more]
D7MVL9	1.9e-11	66.67	NADH-plastoquinone oxidoreductase subunit 1 OS=Arabidopsis lyrata subsp. lyrata ...	[more]
A0A7S9DE62	4.2e-11	65.15	NADH-plastoquinone oxidoreductase subunit 1 OS=Dianyuea turbinata OX=1839802 GN=...	[more]
A0A218KGA1	5.4e-11	66.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus var. ...	[more]
A0A0G3F3B7	5.4e-11	66.67	NADH-quinone oxidoreductase subunit H OS=Rosmarinus officinalis OX=39367 GN=ndhA...	[more]

BLAST of MS004050 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	1.4e-14	65.15	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 1..61 e-value: 6.8E-11 score: 42.0
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004050.1	MS004050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane