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MS003998 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTAAGGGGCAACCCAAGAATTTTTAGAGTTTCAACTTTGTTTGGAGGGAAAGACAGGCACAGCAAAGTTTTCACAATAAAGGGGTTAAGAGACAGAAGAATTAGGCTTTCAACTCCCACTGCAATTCAACTTTATGATCTACAAAACAAACTTGGCCTCGGCCAACCCAGCAAAGTCATAGATTGGCTTATTGATGTCACAAGATTTGATATTGATAAGCTCCCACCTCTCCAAATTCCAAAAGATTTTGACCCAAATGCCTCTGTTCTTTATCAATCTTCAATGCTTCTTCCTCAGGTTTGCCATTTTGATGTTGCAGTGAAAGCCAGAAATGGAGGAACTGAGAGACTTTTGGCACAAAAGTTGTCTCCTTTGGTCAATCATGCTTCTTTATGTTCTCTTCAAAGCAATGCCATGGATGAAAGCTTTTGCCATTTTGAGCCTTCAAGCTTTCCATTCCCATCAATGGAGGCCAACCCAGACTCGTTTTCCTCCTCTGCTTCTGCTCAGTTGCTGTTCTGTCCATTGACAACGCCATCCGAAGTCTCTCCTAGCAGCTTGATG CTAAGGGGCAACCCAAGAATTTTTAGAGTTTCAACTTTGTTTGGAGGGAAAGACAGGCACAGCAAAGTTTTCACAATAAAGGGGTTAAGAGACAGAAGAATTAGGCTTTCAACTCCCACTGCAATTCAACTTTATGATCTACAAAACAAACTTGGCCTCGGCCAACCCAGCAAAGTCATAGATTGGCTTATTGATGTCACAAGATTTGATATTGATAAGCTCCCACCTCTCCAAATTCCAAAAGATTTTGACCCAAATGCCTCTGTTCTTTATCAATCTTCAATGCTTCTTCCTCAGGTTTGCCATTTTGATGTTGCAGTGAAAGCCAGAAATGGAGGAACTGAGAGACTTTTGGCACAAAAGTTGTCTCCTTTGGTCAATCATGCTTCTTTATGTTCTCTTCAAAGCAATGCCATGGATGAAAGCTTTTGCCATTTTGAGCCTTCAAGCTTTCCATTCCCATCAATGGAGGCCAACCCAGACTCGTTTTCCTCCTCTGCTTCTGCTCAGTTGCTGTTCTGTCCATTGACAACGCCATCCGAAGTCTCTCCTAGCAGCTTGATG CTAAGGGGCAACCCAAGAATTTTTAGAGTTTCAACTTTGTTTGGAGGGAAAGACAGGCACAGCAAAGTTTTCACAATAAAGGGGTTAAGAGACAGAAGAATTAGGCTTTCAACTCCCACTGCAATTCAACTTTATGATCTACAAAACAAACTTGGCCTCGGCCAACCCAGCAAAGTCATAGATTGGCTTATTGATGTCACAAGATTTGATATTGATAAGCTCCCACCTCTCCAAATTCCAAAAGATTTTGACCCAAATGCCTCTGTTCTTTATCAATCTTCAATGCTTCTTCCTCAGGTTTGCCATTTTGATGTTGCAGTGAAAGCCAGAAATGGAGGAACTGAGAGACTTTTGGCACAAAAGTTGTCTCCTTTGGTCAATCATGCTTCTTTATGTTCTCTTCAAAGCAATGCCATGGATGAAAGCTTTTGCCATTTTGAGCCTTCAAGCTTTCCATTCCCATCAATGGAGGCCAACCCAGACTCGTTTTCCTCCTCTGCTTCTGCTCAGTTGCTGTTCTGTCCATTGACAACGCCATCCGAAGTCTCTCCTAGCAGCTTGATG LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQKLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPSEVSPSSLM Homology
BLAST of MS003998 vs. NCBI nr
Match: XP_022137286.1 (transcription factor TCP24 [Momordica charantia]) HSP 1 Score: 377.5 bits (968), Expect = 6.8e-101 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of MS003998 vs. NCBI nr
Match: XP_038895251.1 (transcription factor PCF6 [Benincasa hispida]) HSP 1 Score: 241.1 bits (614), Expect = 7.6e-60 Identity = 129/188 (68.62%), Postives = 146/188 (77.66%), Query Frame = 0
BLAST of MS003998 vs. NCBI nr
Match: KAG6584403.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 240.4 bits (612), Expect = 1.3e-59 Identity = 132/186 (70.97%), Postives = 143/186 (76.88%), Query Frame = 0
BLAST of MS003998 vs. NCBI nr
Match: KAG7019990.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 238.8 bits (608), Expect = 3.8e-59 Identity = 131/186 (70.43%), Postives = 143/186 (76.88%), Query Frame = 0
BLAST of MS003998 vs. NCBI nr
Match: XP_023519980.1 (transcription factor TCP13-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 238.8 bits (608), Expect = 3.8e-59 Identity = 130/186 (69.89%), Postives = 142/186 (76.34%), Query Frame = 0
BLAST of MS003998 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29 Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0
BLAST of MS003998 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.7e-28 Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0
BLAST of MS003998 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 4.4e-26 Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of MS003998 vs. ExPASy Swiss-Prot
Match: Q9C758 (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21 Identity = 65/146 (44.52%), Postives = 80/146 (54.79%), Query Frame = 0
BLAST of MS003998 vs. ExPASy Swiss-Prot
Match: A2XMN1 (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18 Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of MS003998 vs. ExPASy TrEMBL
Match: A0A6J1C656 (transcription factor TCP24 OS=Momordica charantia OX=3673 GN=LOC111008784 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of MS003998 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 4.1e-59 Identity = 132/189 (69.84%), Postives = 144/189 (76.19%), Query Frame = 0
BLAST of MS003998 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 7.7e-58 Identity = 130/186 (69.89%), Postives = 141/186 (75.81%), Query Frame = 0
BLAST of MS003998 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 9.7e-45 Identity = 101/162 (62.35%), Postives = 114/162 (70.37%), Query Frame = 0
BLAST of MS003998 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 3.7e-44 Identity = 104/166 (62.65%), Postives = 117/166 (70.48%), Query Frame = 0
BLAST of MS003998 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 ) HSP 1 Score: 131.3 bits (329), Expect = 7.9e-31 Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0
BLAST of MS003998 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 ) HSP 1 Score: 126.7 bits (317), Expect = 1.9e-29 Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0
BLAST of MS003998 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 ) HSP 1 Score: 119.4 bits (298), Expect = 3.1e-27 Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of MS003998 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 ) HSP 1 Score: 119.4 bits (298), Expect = 3.1e-27 Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of MS003998 vs. TAIR 10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 ) HSP 1 Score: 102.4 bits (254), Expect = 3.9e-22 Identity = 65/146 (44.52%), Postives = 80/146 (54.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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