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MS003942 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGGGAGGGGAATGTCAAGTGGTTCAGTGACCAGAAGGGGTATGGCTTCATTTTTTTGAGCCAAGGAGGCAAGAATCTTTCTTCACCTGTCCCCCATACCGAGGGGGTTCTGAAGTCTCGATATTAGAAAGAAAGAAGAGTTTGTGATCAATATGGAATCTGATGACCGTTCCAAGGCTGTTGACCTCACTGCTCATGGTGAGTCAGGGCAATCAAGGAAGCAGGGG AAGAGGGAGGGGAATGTCAAGTGGTTCAGTGACCAGAAGGGGTATGGCTTCATTTTTTTGAGCCAAGGAGGCAAGAATCTTTCTTCACCTGTCCCCCATACCGAGGGGGTTAGTCTCGATATTAGAAAGAAAGAAGAGTTTGTGATCAATATGGAATCTGATGACCGTTCCAAGGCTGTTGACCTCACTGCTCATGGTGAGTCAGGGCAATCAAGGAAGCAGGGG AAGAGGGAGGGGAATGTCAAGTGGTTCAGTGACCAGAAGGGGTATGGCTTCATTTTTTTGAGCCAAGGAGGCAAGAATCTTTCTTCACCTGTCCCCCATACCGAGGGGGTTAGTCTCGATATTAGAAAGAAAGAAGAGTTTGTGATCAATATGGAATCTGATGACCGTTCCAAGGCTGTTGACCTCACTGCTCATGGTGAGTCAGGGCAATCAAGGAAGCAGGGG KREGNVKWFSDQKGYGFIFLSQGGKNLSSPVPHTEGVSLDIRKKEEFVINMESDDRSKAVDLTAHGESGQSRKQG Homology
BLAST of MS003942 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus]) HSP 1 Score: 63.5 bits (153), Expect = 8.7e-07 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida]) HSP 1 Score: 63.5 bits (153), Expect = 8.7e-07 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima]) HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05 Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0
BLAST of MS003942 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05 Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of MS003942 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 6.5e-05 Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of MS003942 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 4.2e-04 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 0
BLAST of MS003942 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 5.5e-07 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 5.5e-07 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. ExPASy TrEMBL
Match: A0A6J1HY03 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06 Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of MS003942 vs. ExPASy TrEMBL
Match: A0A5D3CLX3 (Glycine-rich protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00750 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06 Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of MS003942 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 ) HSP 1 Score: 50.1 bits (118), Expect = 9.2e-07 Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0
BLAST of MS003942 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 ) HSP 1 Score: 47.8 bits (112), Expect = 4.6e-06 Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of MS003942 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B ) HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05 Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 0
BLAST of MS003942 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 ) HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04 Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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