MS003919 (gene) Bitter gourd (TR) v1

Overview
NameMS003919
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold127: 1551542 .. 1551742 (-)
RNA-Seq ExpressionMS003919
SyntenyMS003919
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGTATTTTCCTGCATTGCAGCCTACATGTTCGCAAATGCAAGGAAGAAAGATTTAGGCAGAATGGAGAAGGATCCAGTAGAAAAACACAGTGATGGTGAAGTTATGACGAATATTCCCTCGACGTTGATGGTGGATACCACAGCCATAGCTGCTGAGAATATCTCGGAAGATCATCAGCGAGAACCATTCCAATGGATG

mRNA sequence

TGTGTATTTTCCTGCATTGCAGCCTACATGTTCGCAAATGCAAGGAAGAAAGATTTAGGCAGAATGGAGAAGGATCCAGTAGAAAAACACAGTGATGGTGAAGTTATGACGAATATTCCCTCGACGTTGATGGTGGATACCACAGCCATAGCTGCTGAGAATATCTCGGAAGATCATCAGCGAGAACCATTCCAATGGATG

Coding sequence (CDS)

TGTGTATTTTCCTGCATTGCAGCCTACATGTTCGCAAATGCAAGGAAGAAAGATTTAGGCAGAATGGAGAAGGATCCAGTAGAAAAACACAGTGATGGTGAAGTTATGACGAATATTCCCTCGACGTTGATGGTGGATACCACAGCCATAGCTGCTGAGAATATCTCGGAAGATCATCAGCGAGAACCATTCCAATGGATG

Protein sequence

CVFSCIAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQWM
Homology
BLAST of MS003919 vs. NCBI nr
Match: XP_022147677.1 (uncharacterized protein LOC111016544 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 65
           +AAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ
Sbjct: 42  LAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 101

Query: 66  WM 68
           WM
Sbjct: 102 WM 103

BLAST of MS003919 vs. NCBI nr
Match: XP_038880640.1 (uncharacterized protein LOC120072271 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 8   AYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQWM 67
           AYMFA+ARKK   ++E D VEK SD EV+T IPSTLMVDTT+I  EN+ ED Q+EP QWM
Sbjct: 156 AYMFASARKKHFDQLENDQVEKQSDSEVITEIPSTLMVDTTSIVTENMLEDQQQEPNQWM 215

BLAST of MS003919 vs. NCBI nr
Match: XP_023530326.1 (uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDP------------VEKHSDGEVMTNIPSTLMVDTTAIAAE 65
           ++AYMFA+ARKKDLG+ME D             +EK SD E+M  IPSTLMVDTT I  E
Sbjct: 41  LSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIM-EIPSTLMVDTTGIVTE 100

Query: 66  NISEDHQREPFQWM 68
           NISED  ++PF W+
Sbjct: 101 NISEDQHQKPFHWI 113

BLAST of MS003919 vs. NCBI nr
Match: XP_004135711.1 (uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 65
           ++AYMFA+ARK+   ++E D VEK SD E++T IPST+MVDTT I  EN+ ED Q+EP Q
Sbjct: 41  LSAYMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQ 100

BLAST of MS003919 vs. NCBI nr
Match: XP_008450851.1 (PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 65
           ++AYMFA+ARK+    +E D VEK SD E++T IPST+MVDTT I  EN+ ED Q+EP Q
Sbjct: 41  LSAYMFASARKRHFNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQ 100

BLAST of MS003919 vs. ExPASy TrEMBL
Match: A0A6J1D315 (uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016544 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.5e-27
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 65
           +AAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ
Sbjct: 42  LAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 101

Query: 66  WM 68
           WM
Sbjct: 102 WM 103

BLAST of MS003919 vs. ExPASy TrEMBL
Match: A0A0A0M1X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 65
           ++AYMFA+ARK+   ++E D VEK SD E++T IPST+MVDTT I  EN+ ED Q+EP Q
Sbjct: 41  LSAYMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQ 100

BLAST of MS003919 vs. ExPASy TrEMBL
Match: A0A1S3BR82 (uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 65
           ++AYMFA+ARK+    +E D VEK SD E++T IPST+MVDTT I  EN+ ED Q+EP Q
Sbjct: 41  LSAYMFASARKRHFNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQ 100

BLAST of MS003919 vs. ExPASy TrEMBL
Match: A0A6J1EIP0 (uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC111433716 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.6e-11
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRM------------EKDPVEKHSDGEVMTNIPSTLMVDTTAIAAE 65
           ++AYMFA+ARKKDLG+M            E D +EK SD E+M  IPST MVDTT I  E
Sbjct: 41  LSAYMFASARKKDLGQMENNEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE 100

Query: 66  NISEDHQREPFQWM 68
           NISED  ++PF W+
Sbjct: 101 NISEDQHQKPFHWI 113

BLAST of MS003919 vs. ExPASy TrEMBL
Match: A0A6J1HYA0 (uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467730 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 6   IAAYMFANARKKDLGRMEKDP------------VEKHSDGEVMTNIPSTLMVDTTAIAAE 65
           ++AYMFA+ARKKDLG+ME D             +EK SD E+M  IPST MVDTT I  E
Sbjct: 41  LSAYMFASARKKDLGQMESDEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTE 100

Query: 66  NISEDHQREPFQWM 68
           NI ED  ++PF W+
Sbjct: 101 NIPEDQHQKPFHWI 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147677.12.0e-2698.39uncharacterized protein LOC111016544 [Momordica charantia][more]
XP_038880640.13.2e-1366.67uncharacterized protein LOC120072271 [Benincasa hispida][more]
XP_023530326.13.0e-1155.41uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo][more]
XP_004135711.13.0e-1158.33uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus][more]
XP_008450851.14.0e-1158.33PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D3159.5e-2798.39uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A0A0M1X91.5e-1158.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1[more]
A0A1S3BR821.9e-1158.33uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=... [more]
A0A6J1EIP05.6e-1154.05uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC1114337... [more]
A0A6J1HYA01.6e-1052.70uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003919.1MS003919.1mRNA