MS003891 (gene) Bitter gourd (TR) v1

Overview
NameMS003891
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMYB transcription factor
Locationscaffold127: 1329329 .. 1330464 (+)
RNA-Seq ExpressionMS003891
SyntenyMS003891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAGCTCCTTGCTGTGATAAAGCTACTGTGAAGAGAGGGCCATGGTCTCCTCAAGAGGACGCCACTCTCAGAAACTACATCCACAAACATGGCACTGGTGGCAACTGGATTGCTCTGCCTCGTAAAGCTGGTTCACTTCTCTCTCTCGCTCTCGATCATATGATCTGATTATGGATATTTCAGTTCATATTTTTTTGTTTTTTCCATCTCTTTAGGCCTTAATCGCTGTGGCAAGAGTTGTCGTCTGAGGTGGCTGAATTATCTTCGACCAGACATCAAACATGGAAGTTTCACGGAGGAAGAAGATAGCGTTATTTGCACTCTCTATTCATCCATTGGTAGTAGGCAAGTTCGGCTTCCTATTAAAATTATTAAATTTACCAAAAATTTACCTGTAGGCTTTAATTATTAATTTATTGTTGAAACAACTTAATTTTGGTCTTTTATTTGATTGGAAGTTCAAAATTCACGAGAAAGGAGAAGAATTGTCTAGTGGAGTTTTTGTATAATTTAGAAAACTTAGTGGGTATAATTATATTTATATGTTAATTTCAAAATCCCCGAGTAAGTGGAAGCCGGTGGAGCAAGCTGGGAGTGAATTAAATTTATGGTAACTATTATTCACATCAATTTTGTAGTTTAATGGTGATTCAGTGTTTTTGTCTGACTATTGATTTTTATTTTTATATATATAAAATATATATTTGTTGGTTTAAATCAGGTGGGCTGTAATTGCATCACAATTGCCTGGGAGAACCGATAATGATGTCAAGAACCACTGGAACACCAAGTTGAAGAAGAAGTTCAATTCAGTTTCCGAAACGCCAAATCCCACGGTTGCCGCCGCCGCCGCCGACGGCCACCACAATGCCACTACCGACATCACATTTCCGGCCAACACGCCGCTGTTTCCCAACGCCAACATTCTGTTTTCCACTCCTCTGAATTTCGACCCACAAGAATTTCCCACGATGGACCGGTTTCCGACGACAGAGCAAACCCAGATCCCATTTTCCGGCAATGGCGGCGGCTCCGACGACGGCGAAATTCTACTAAGCTATGGGTTTTATCAGTACCCTTATGAAGATCATCTTGCGGAAGGATTATTTGACGTAAGTTATTATATGGGG

mRNA sequence

ATGGGAAGAGCTCCTTGCTGTGATAAAGCTACTGTGAAGAGAGGGCCATGGTCTCCTCAAGAGGACGCCACTCTCAGAAACTACATCCACAAACATGGCACTGGTGGCAACTGGATTGCTCTGCCTCGTAAAGCTGGCCTTAATCGCTGTGGCAAGAGTTGTCGTCTGAGGTGGCTGAATTATCTTCGACCAGACATCAAACATGGAAGTTTCACGGAGGAAGAAGATAGCGTTATTTGCACTCTCTATTCATCCATTGGTAGTTGGGCTGTAATTGCATCACAATTGCCTGGGAGAACCGATAATGATGTCAAGAACCACTGGAACACCAAGTTGAAGAAGAAGTTCAATTCAGTTTCCGAAACGCCAAATCCCACGGTTGCCGCCGCCGCCGCCGACGGCCACCACAATGCCACTACCGACATCACATTTCCGGCCAACACGCCGCTGTTTCCCAACGCCAACATTCTGTTTTCCACTCCTCTGAATTTCGACCCACAAGAATTTCCCACGATGGACCGGTTTCCGACGACAGAGCAAACCCAGATCCCATTTTCCGGCAATGGCGGCGGCTCCGACGACGGCGAAATTCTACTAAGCTATGGGTTTTATCAGTACCCTTATGAAGATCATCTTGCGGAAGGATTATTTGACGTAAGTTATTATATGGGG

Coding sequence (CDS)

ATGGGAAGAGCTCCTTGCTGTGATAAAGCTACTGTGAAGAGAGGGCCATGGTCTCCTCAAGAGGACGCCACTCTCAGAAACTACATCCACAAACATGGCACTGGTGGCAACTGGATTGCTCTGCCTCGTAAAGCTGGCCTTAATCGCTGTGGCAAGAGTTGTCGTCTGAGGTGGCTGAATTATCTTCGACCAGACATCAAACATGGAAGTTTCACGGAGGAAGAAGATAGCGTTATTTGCACTCTCTATTCATCCATTGGTAGTTGGGCTGTAATTGCATCACAATTGCCTGGGAGAACCGATAATGATGTCAAGAACCACTGGAACACCAAGTTGAAGAAGAAGTTCAATTCAGTTTCCGAAACGCCAAATCCCACGGTTGCCGCCGCCGCCGCCGACGGCCACCACAATGCCACTACCGACATCACATTTCCGGCCAACACGCCGCTGTTTCCCAACGCCAACATTCTGTTTTCCACTCCTCTGAATTTCGACCCACAAGAATTTCCCACGATGGACCGGTTTCCGACGACAGAGCAAACCCAGATCCCATTTTCCGGCAATGGCGGCGGCTCCGACGACGGCGAAATTCTACTAAGCTATGGGTTTTATCAGTACCCTTATGAAGATCATCTTGCGGAAGGATTATTTGACGTAAGTTATTATATGGGG

Protein sequence

MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLNYLRPDIKHGSFTEEEDSVICTLYSSIGSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSVSETPNPTVAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFPTTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG
Homology
[Close]
BLAST of MS003891 vs. NCBI nr
Match: XP_022145017.1 (transcription factor RAX2-like [Momordica charantia])

HSP 1 Score: 469.5 bits (1207), Expect = 1.6e-128
Identity = 223/228 (97.81%), Postives = 224/228 (98.25%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+NYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHGSFTEEEDSVICTLYSSIGS WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV
Sbjct: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120

Query: 121 SETPNPTV---AAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFP 180
           SETPNPTV   AAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFP
Sbjct: 121 SETPNPTVAAAAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFP 180

Query: 181 TTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG 225
           TTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG
Sbjct: 181 TTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG 228

[Close]
BLAST of MS003891 vs. NCBI nr
Match: XP_023530624.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 2.1e-77
Identity = 156/244 (63.93%), Postives = 175/244 (71.72%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+ +IHKHGT GNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 49  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 108

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHG FT EED++ICTLYS++GS WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 109 YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 168

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTPLFPNA------------NILFST------- 180
           SE P PT+AAA      NA T++ FPAN P +  A            N++F+        
Sbjct: 169 SERPTPTIAAAT---QQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKH 228

Query: 181 ------PLNFDPQEFPTMDRFPT--TEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHL 217
                 P+ ++PQE  T     +   EQ Q+PF GN      GE LLSYGFYQYPY D +
Sbjct: 229 DPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNA-----GEALLSYGFYQYPYGD-V 283

[Close]
BLAST of MS003891 vs. NCBI nr
Match: XP_022933833.1 (transcription factor MYB36-like [Cucurbita moschata])

HSP 1 Score: 299.3 bits (765), Expect = 2.8e-77
Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+ +IHKHGT GNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHG FT EED++ICTLYS++GS WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTP-------------------LFPNANILF-- 180
           SE P PT+AAA      NA T++ FPAN P                   +F +AN  F  
Sbjct: 121 SERPAPTIAAAT---QQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKH 180

Query: 181 ----STPLNFDPQEFPTMDRFPT--TEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHL 217
                 P+ ++PQE  T     +   EQ Q+PF GN      GE LLSYGFYQYPY D +
Sbjct: 181 DPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNA-----GEALLSYGFYQYPYGD-V 235

[Close]
BLAST of MS003891 vs. NCBI nr
Match: KAG6588016.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.5 bits (763), Expect = 4.8e-77
Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+ +IHKHGT GNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHG FT EED++ICTLYS++GS WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTP-------------------LFPNANILF-- 180
           SE P PT+AAA      NA T++ FPAN P                   +F +AN  F  
Sbjct: 121 SERPAPTMAAAT---QQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKH 180

Query: 181 ----STPLNFDPQEFPTMDRFPT--TEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHL 217
                 P+ ++PQE  T     +   EQ Q+PF GN      GE LLSYGFYQYPY D +
Sbjct: 181 DPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNA-----GEALLSYGFYQYPYGD-V 235

[Close]
BLAST of MS003891 vs. NCBI nr
Match: XP_023005467.1 (transcription factor RAX3-like [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-76
Identity = 155/244 (63.52%), Postives = 173/244 (70.90%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+ +IHKHGT GNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHG FT EED++ICTLYS++GS WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTP-------------------LFPNANILF-- 180
           SE   PT+AA       NA T++ FPAN P                   +F +AN  F  
Sbjct: 121 SERSAPTIAAVT---QQNAITNMAFPANAPPYSAAADWLRFDEQMDGNLMFADANFDFKH 180

Query: 181 ----STPLNFDPQEFPTMDRFPT--TEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHL 217
                 P+ ++PQE  T     +   EQ Q+PF GN     DGE +LSYGFYQYPY D +
Sbjct: 181 DPEDQFPMLWNPQELSTSSSNSSLPVEQNQVPFGGN-----DGETVLSYGFYQYPYGD-V 235

[Close]
BLAST of MS003891 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.5e-53
Identity = 90/116 (77.59%), Postives = 105/116 (90.52%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VK+GPWSP+ED  L++YI K+GTGGNWIALP+K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKK 116
           YLRP+IKHG F+EEED +I +LY SIGS W++IA+QLPGRTDND+KN+WNTKLKKK
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116

[Close]
BLAST of MS003891 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.5e-53
Identity = 88/116 (75.86%), Postives = 106/116 (91.38%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VK+GPWSP+EDA L++YI   GTGGNWIALP+K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKK 116
           YLRP+IKHG F+EEE+++IC+LY +IGS W++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]
BLAST of MS003891 vs. ExPASy Swiss-Prot
Match: Q9SJL7 (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-52
Identity = 98/167 (58.68%), Postives = 123/167 (73.65%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VKRGPWSP+EDA L++YI K GTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRP+I+HG FTEEED++I +L++SIGS W+VIA+ L GRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKL--- 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDP 167
                  +A  A   HH+     +  + +P   +   + ++ L ++P
Sbjct: 121 -------IATMAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNP 157

[Close]
BLAST of MS003891 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-52
Identity = 105/215 (48.84%), Postives = 147/215 (68.37%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK  VKRGPWSP+ED+ LR+YI K+G GGNWI+ P KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRP+IKHG F+EEED +I +L+++IGS W++IA+ LPGRTDND+KN+WNTKL+KK   +
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKL--L 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFPTTE 180
           S + + + +A A+   +  + D+  P +    P+++     P   +P ++PT        
Sbjct: 121 SSSSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSY---NPYAENPNQYPT-------- 180

Query: 181 QTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAE 215
              +  S NG  + D +I +SY    YP + +L++
Sbjct: 181 -KSLISSINGFEAGDKQI-ISYINPNYPQDLYLSD 200

[Close]
BLAST of MS003891 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.2e-52
Identity = 86/119 (72.27%), Postives = 105/119 (88.24%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK  VK+GPWS +EDA L++YI KHGTG NWI+LP++ G+ RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 119
           YLRP++KHG FT+EED +IC+LY +IGS W++IASQLPGRTDND+KN+WNT+LKKK  S
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLS 119

[Close]
BLAST of MS003891 vs. ExPASy TrEMBL
Match: A0A6J1CVC2 (transcription factor RAX2-like OS=Momordica charantia OX=3673 GN=LOC111014545 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 7.6e-129
Identity = 223/228 (97.81%), Postives = 224/228 (98.25%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+NYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHGSFTEEEDSVICTLYSSIGS WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV
Sbjct: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120

Query: 121 SETPNPTV---AAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFP 180
           SETPNPTV   AAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFP
Sbjct: 121 SETPNPTVAAAAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFP 180

Query: 181 TTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG 225
           TTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG
Sbjct: 181 TTEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAEGLFDVSYYMG 228

[Close]
BLAST of MS003891 vs. ExPASy TrEMBL
Match: A0A6J1F5Y4 (transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111441129 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.4e-77
Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+ +IHKHGT GNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHG FT EED++ICTLYS++GS WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTP-------------------LFPNANILF-- 180
           SE P PT+AAA      NA T++ FPAN P                   +F +AN  F  
Sbjct: 121 SERPAPTIAAAT---QQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKH 180

Query: 181 ----STPLNFDPQEFPTMDRFPT--TEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHL 217
                 P+ ++PQE  T     +   EQ Q+PF GN      GE LLSYGFYQYPY D +
Sbjct: 181 DPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNA-----GEALLSYGFYQYPYGD-V 235

[Close]
BLAST of MS003891 vs. ExPASy TrEMBL
Match: A0A6J1KT76 (transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111498442 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 8.8e-77
Identity = 155/244 (63.52%), Postives = 173/244 (70.90%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKATVKRGPWSPQEDATL+ +IHKHGT GNWIALPRKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRPDIKHG FT EED++ICTLYS++GS WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTP-------------------LFPNANILF-- 180
           SE   PT+AA       NA T++ FPAN P                   +F +AN  F  
Sbjct: 121 SERSAPTIAAVT---QQNAITNMAFPANAPPYSAAADWLRFDEQMDGNLMFADANFDFKH 180

Query: 181 ----STPLNFDPQEFPTMDRFPT--TEQTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHL 217
                 P+ ++PQE  T     +   EQ Q+PF GN     DGE +LSYGFYQYPY D +
Sbjct: 181 DPEDQFPMLWNPQELSTSSSNSSLPVEQNQVPFGGN-----DGETVLSYGFYQYPYGD-V 235

[Close]
BLAST of MS003891 vs. ExPASy TrEMBL
Match: A0A1S3BPH8 (transcription factor RAX2-like OS=Cucumis melo OX=3656 GN=LOC103492286 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.2e-68
Identity = 145/250 (58.00%), Postives = 168/250 (67.20%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSPQEDATL  +IHKHGTGGNWIALP KAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKF-NS 120
           YLRPDIKHG FT+EED+VIC+LYS+IGS WA+IASQLPGRTDNDVKNHWNTKLKKKF NS
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAIIASQLPGRTDNDVKNHWNTKLKKKFNNS 120

Query: 121 VSETPNPTVAAAAA----------------DGHHNATTDITFPANTPLFPNANIL--FST 180
           +SE PN T+                     D  HN  T+    ++ P F    +L   + 
Sbjct: 121 LSEPPNSTMIVTDPSRYSSTTANSLKVLHNDHEHNINTNYNMFSSHPRFDQIPMLNNNNN 180

Query: 181 PLNFDPQEFPTMDRFPTTEQTQIPFSGNGGGSDDGEILLS------YGFYQYPYEDHLAE 225
           P+  +     +    P  EQ  +    +G GSD+ EI+L       Y + QYPYED + E
Sbjct: 181 PIIPELSTSSSSISLPNIEQNHLE-EFSGPGSDEAEIILQSYFHGVYDYNQYPYEDDVME 240

[Close]
BLAST of MS003891 vs. ExPASy TrEMBL
Match: A0A0A0LZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575180 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.2e-67
Identity = 148/249 (59.44%), Postives = 168/249 (67.47%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSPQEDATL  +IHKHGTGGNWIALP KAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFN-S 120
           YLRPDIKHG FT+EED+VIC+LYS+IGS WAVIASQLPGRTDNDVKNHWNTKLKKKFN S
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120

Query: 121 VSETPNPTV---------AAAAA-------DGHHNATTDITFPANTPLFPNANILFSTPL 180
            S+ PNP V         A + A       D  HN  T+    ++ P F    +L +   
Sbjct: 121 FSKPPNPIVVVTDPPRYSATSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180

Query: 181 NFDPQEFPTMDRFP-TTEQTQIPFSGNGGGSDDGEILLSY--GFY----QYPYEDHLAEG 225
              P+   +        EQ  + FSG     +  +IL SY  G Y    QYPYED + +G
Sbjct: 181 PIIPELSTSSSSISLPIEQNHLEFSG-PSSDEAADILQSYFHGVYENNNQYPYEDDVMDG 240

[Close]
BLAST of MS003891 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-54
Identity = 89/116 (76.72%), Postives = 105/116 (90.52%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VK+GPWSP+EDA L++YI   GTGGNWIALP+K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKK 116
           YLRP+IKHG F+EEED++IC LY +IGS W++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]
BLAST of MS003891 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 208.8 bits (530), Expect = 4.6e-54
Identity = 90/116 (77.59%), Postives = 105/116 (90.52%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VK+GPWSP+ED  L++YI K+GTGGNWIALP+K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKK 116
           YLRP+IKHG F+EEED +I +LY SIGS W++IA+QLPGRTDND+KN+WNTKLKKK
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116

[Close]
BLAST of MS003891 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 208.4 bits (529), Expect = 6.1e-54
Identity = 88/116 (75.86%), Postives = 106/116 (91.38%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VK+GPWSP+EDA L++YI   GTGGNWIALP+K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKK 116
           YLRP+IKHG F+EEE+++IC+LY +IGS W++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]
BLAST of MS003891 vs. TAIR 10
Match: AT2G36890.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 7.9e-54
Identity = 98/167 (58.68%), Postives = 123/167 (73.65%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA VKRGPWSP+EDA L++YI K GTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRP+I+HG FTEEED++I +L++SIGS W+VIA+ L GRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKL--- 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDP 167
                  +A  A   HH+     +  + +P   +   + ++ L ++P
Sbjct: 121 -------IATMAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNP 157

[Close]
BLAST of MS003891 vs. TAIR 10
Match: AT5G23000.1 (myb domain protein 37 )

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-53
Identity = 105/215 (48.84%), Postives = 147/215 (68.37%), Query Frame = 0 

Query: 1   MGRAPCCDKATVKRGPWSPQEDATLRNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK  VKRGPWSP+ED+ LR+YI K+G GGNWI+ P KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGS-WAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120
           YLRP+IKHG F+EEED +I +L+++IGS W++IA+ LPGRTDND+KN+WNTKL+KK   +
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKL--L 120

Query: 121 SETPNPTVAAAAADGHHNATTDITFPANTPLFPNANILFSTPLNFDPQEFPTMDRFPTTE 180
           S + + + +A A+   +  + D+  P +    P+++     P   +P ++PT        
Sbjct: 121 SSSSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSY---NPYAENPNQYPT-------- 180

Query: 181 QTQIPFSGNGGGSDDGEILLSYGFYQYPYEDHLAE 215
              +  S NG  + D +I +SY    YP + +L++
Sbjct: 181 -KSLISSINGFEAGDKQI-ISYINPNYPQDLYLSD 200

The following BLAST results are available for this feature:
BLAST of MS003891 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145017.11.6e-12897.81transcription factor RAX2-like [Momordica charantia][more]
XP_023530624.12.1e-7763.93transcription factor MYB36-like [Cucurbita pepo subsp. pepo][more]
XP_022933833.12.8e-7764.34transcription factor MYB36-like [Cucurbita moschata][more]
KAG6588016.14.8e-7764.34Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023005467.11.8e-7663.52transcription factor RAX3-like [Cucurbita maxima][more]
BLAST of MS003891 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FKL26.5e-5377.59Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1[more]
Q9M2Y98.5e-5375.86Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1[more]
Q9SJL71.1e-5258.68Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1[more]
Q9FG681.5e-5248.84Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1[more]
F4JSU07.2e-5272.27Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1[more]
BLAST of MS003891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CVC27.6e-12997.81transcription factor RAX2-like OS=Momordica charantia OX=3673 GN=LOC111014545 PE... [more]
A0A6J1F5Y41.4e-7764.34transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111441129 PE... [more]
A0A6J1KT768.8e-7763.52transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111498442 PE=4 ... [more]
A0A1S3BPH81.2e-6858.00transcription factor RAX2-like OS=Cucumis melo OX=3656 GN=LOC103492286 PE=4 SV=1[more]
A0A0A0LZB22.2e-6759.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575180 PE=4 SV=1[more]
BLAST of MS003891 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65790.12.7e-5476.72myb domain protein 68 [more]
AT5G57620.14.6e-5477.59myb domain protein 36 [more]
AT3G49690.16.1e-5475.86myb domain protein 84 [more]
AT2G36890.17.9e-5458.68Duplicated homeodomain-like superfamily protein [more]
AT5G23000.11.0e-5348.84myb domain protein 37 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 67..114
e-value: 4.5E-9
score: 46.2
coord: 13..64
e-value: 5.0E-12
score: 56.0
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 9..62
score: 10.766103
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 63..112
score: 9.291328
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..62
e-value: 1.50321E-9
score: 50.2666
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 70..112
e-value: 1.47038E-8
score: 47.5702
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 69..110
e-value: 3.0E-9
score: 36.9
coord: 14..62
e-value: 1.8E-14
score: 53.6
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 9..66
score: 20.122065
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 67..116
score: 16.929771
NoneNo IPR availableGENE3D1.10.10.60coord: 69..134
e-value: 5.3E-17
score: 63.6
NoneNo IPR availableGENE3D1.10.10.60coord: 7..68
e-value: 8.9E-19
score: 69.1
NoneNo IPR availablePANTHERPTHR48000:SF36OS09G0431300 PROTEINcoord: 1..133
NoneNo IPR availablePANTHERPTHR48000OS09G0431300 PROTEINcoord: 1..133
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 12..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003891.1MS003891.1mRNA