MS003887 (gene) Bitter gourd (TR) v1

Overview


Name	MS003887
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NEDD8-activating enzyme E1 regulatory subunit
Location	scaffold127: 1282053 .. 1282169 (-)
RNA-Seq Expression	MS003887
Synteny	MS003887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATGCCTGCTGAAGTGCGGGCCTACAGGTTTTGAAACATTGAAAATTTTAGTTCTTTGCATTGCTATAACTGATGGTATCGAGGTCAAAGGGGACGATCTTGGCAACAACTTCATG

mRNA sequence

ATATGCCTGCTGAAGTGCGGGCCTACAGGTTTTGAAACATTGAAAATTTTAGTTCTTTGCATTGCTATAACTGATGGTATCGAGGTCAAAGGGGACGATCTTGGCAACAACTTCATG

Coding sequence (CDS)

ATATGCCTGCTGAAGTGCGGGCCTACAGGTTTTGAAACATTGAAAATTTTAGTTCTTTGCATTGCTATAACTGATGGTATCGAGGTCAAAGGGGACGATCTTGGCAACAACTTCATG

Protein sequence

ICLLKCGPTGFETLKILVLCIAITDGIEVKGDDLGNNFM

Homology

[Close]

BLAST of MS003887 vs. NCBI nr
Match: MQM19983.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLL CGPTG ETLK LVL    CI + DG +V+  DLGNNFM
Sbjct: 56 VCLLNCGPTGSETLKNLVLGGIGCITVVDGSKVEFGDLGNNFM 98

[Close]

BLAST of MS003887 vs. NCBI nr
Match: TYJ42991.1 (hypothetical protein E1A91_A03G123800v1 [Gossypium mustelinum])

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-04
Identity = 29/43 (67.44%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG ETLK LVL     I I DG +VK  DLGNNFM
Sbjct: 28 ICLLNCGPTGSETLKNLVLGGVGSITIVDGSKVKFGDLGNNFM 70

[Close]

BLAST of MS003887 vs. NCBI nr
Match: XP_031500978.1 (NEDD8-activating enzyme E1 regulatory subunit AXR1-like isoform X3 [Nymphaea colorata])

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLLKCGPTG ETLK LVL     I + DG +V+  DLGNNFM
Sbjct: 28 VCLLKCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFM 70

[Close]

BLAST of MS003887 vs. NCBI nr
Match: XP_031500977.1 (NEDD8-activating enzyme E1 regulatory subunit AXR1-like isoform X2 [Nymphaea colorata])

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLLKCGPTG ETLK LVL     I + DG +V+  DLGNNFM
Sbjct: 28 VCLLKCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFM 70

[Close]

BLAST of MS003887 vs. NCBI nr
Match: KAF3792658.1 (NEDD8-activating enzyme E1 regulatory subunit [Nymphaea thermarum])

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLLKCGPTG ETLK LVL     I + DG +V+  DLGNNFM
Sbjct: 28 VCLLKCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFM 70

[Close]

BLAST of MS003887 vs. ExPASy Swiss-Prot
Match: P42744 (NEDD8-activating enzyme E1 regulatory subunit AXR1 OS=Arabidopsis thaliana OX=3702 GN=AXR1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-06
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG E LK LVL     I + DG +V+  DLGNNFM
Sbjct: 44 ICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQFGDLGNNFM 86

[Close]

BLAST of MS003887 vs. ExPASy Swiss-Prot
Match: Q9ZV69 (NEDD8-activating enzyme E1 regulatory subunit AXL OS=Arabidopsis thaliana OX=3702 GN=AXL1 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-05
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG E LK LV+     I I DG +V+  DLGNNFM
Sbjct: 28 ICLLNCGPTGSEALKNLVIGGIGSITIVDGSKVEIGDLGNNFM 70

[Close]

BLAST of MS003887 vs. ExPASy TrEMBL
Match: A0A1D1XGS7 (NEDD8-activating enzyme E1 regulatory subunit (Fragment) OS=Anthurium amnicola OX=1678845 GN=AXR1_1 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-04
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLL CGPTG ETLK LVL    C+ + DG +V+  DLGNNFM
Sbjct: 49 VCLLNCGPTGSETLKNLVLGGVGCVTVVDGSKVEFGDLGNNFM 91

[Close]

BLAST of MS003887 vs. ExPASy TrEMBL
Match: A0A1D1Z9T1 (NEDD8-activating enzyme E1 regulatory subunit (Fragment) OS=Anthurium amnicola OX=1678845 GN=AXR1_0 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-04
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLL CGPTG ETLK LVL    C+ + DG +V+  DLGNNFM
Sbjct: 49 VCLLNCGPTGSETLKNLVLGGVGCVTVVDGSKVEFGDLGNNFM 91

[Close]

BLAST of MS003887 vs. ExPASy TrEMBL
Match: A0A5D2ZZK6 (NEDD8-activating enzyme E1 regulatory subunit OS=Gossypium mustelinum OX=34275 GN=E1A91_A03G123800v1 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-04
Identity = 29/43 (67.44%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG ETLK LVL     I I DG +VK  DLGNNFM
Sbjct: 28 ICLLNCGPTGSETLKNLVLGGVGSITIVDGSKVKFGDLGNNFM 70

[Close]

BLAST of MS003887 vs. ExPASy TrEMBL
Match: A0A7J6WEV7 (NEDD8-activating enzyme E1 regulatory subunit OS=Thalictrum thalictroides OX=46969 GN=FRX31_015023 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-04
Identity = 29/43 (67.44%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG ETLK LVL     I I DG +V  DDLGNNFM
Sbjct: 28 ICLLGCGPTGSETLKNLVLGGVGSITIVDGSKVVEDDLGNNFM 70

[Close]

BLAST of MS003887 vs. ExPASy TrEMBL
Match: A0A5K0XMN0 (ThiF domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS6675 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          +CLLKCGPTG ETLK LVL     I + DG +V+  DLGNNFM
Sbjct: 15 VCLLKCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFM 57

[Close]

BLAST of MS003887 vs. TAIR 10
Match: AT1G05180.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 6.3e-07
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG E LK LVL     I + DG +V+  DLGNNFM
Sbjct: 44 ICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQFGDLGNNFM 86

[Close]

BLAST of MS003887 vs. TAIR 10
Match: AT2G32410.1 (AXR1-like )

HSP 1 Score: 48.9 bits (115), Expect = 1.1e-06
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG E LK LV+     I I DG +V+  DLGNNFM
Sbjct: 28 ICLLNCGPTGSEALKNLVIGGIGSITIVDGSKVEIGDLGNNFM 70

[Close]

BLAST of MS003887 vs. TAIR 10
Match: AT2G32410.2 (AXR1-like )

HSP 1 Score: 48.9 bits (115), Expect = 1.1e-06
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 1  ICLLKCGPTGFETLKILVL----CIAITDGIEVKGDDLGNNFM 40
          ICLL CGPTG E LK LV+     I I DG +V+  DLGNNFM
Sbjct: 28 ICLLNCGPTGSEALKNLVIGGIGSITIVDGSKVEIGDLGNNFM 70

The following BLAST results are available for this feature:

BLAST of MS003887 vs. NCBI nr


Match Name	E-value	Identity	Description
MQM19983.1	1.6e-04	62.79	hypothetical protein [Colocasia esculenta]	[more]
TYJ42991.1	4.7e-04	67.44	hypothetical protein E1A91_A03G123800v1 [Gossypium mustelinum]	[more]
XP_031500978.1	6.1e-04	62.79	NEDD8-activating enzyme E1 regulatory subunit AXR1-like isoform X3 [Nymphaea col...	[more]
XP_031500977.1	6.1e-04	62.79	NEDD8-activating enzyme E1 regulatory subunit AXR1-like isoform X2 [Nymphaea col...	[more]
KAF3792658.1	6.1e-04	62.79	NEDD8-activating enzyme E1 regulatory subunit [Nymphaea thermarum]	[more]

BLAST of MS003887 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42744	8.8e-06	60.47	NEDD8-activating enzyme E1 regulatory subunit AXR1 OS=Arabidopsis thaliana OX=37...	[more]
Q9ZV69	1.5e-05	60.47	NEDD8-activating enzyme E1 regulatory subunit AXL OS=Arabidopsis thaliana OX=370...	[more]

BLAST of MS003887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1D1XGS7	1.0e-04	60.47	NEDD8-activating enzyme E1 regulatory subunit (Fragment) OS=Anthurium amnicola O...	[more]
A0A1D1Z9T1	1.0e-04	60.47	NEDD8-activating enzyme E1 regulatory subunit (Fragment) OS=Anthurium amnicola O...	[more]
A0A5D2ZZK6	2.3e-04	67.44	NEDD8-activating enzyme E1 regulatory subunit OS=Gossypium mustelinum OX=34275 G...	[more]
A0A7J6WEV7	3.0e-04	67.44	NEDD8-activating enzyme E1 regulatory subunit OS=Thalictrum thalictroides OX=469...	[more]
A0A5K0XMN0	3.0e-04	62.79	ThiF domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_...	[more]

BLAST of MS003887 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05180.1	6.3e-07	60.47	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT2G32410.1	1.1e-06	60.47	AXR1-like	[more]
AT2G32410.2	1.1e-06	60.47	AXR1-like	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003887.1	MS003887.1	mRNA