MS003809 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATCAGCATCAGCATCCCATCCTCCGCCAAAAGCGGCAGCGACGGCGACGGCGGCGGCGCGGCGGCTCACTCGTGTCCATCGAAAGGCCCATGCCTGTGCTCGCCGACTACTCATCCAGGCTCGTTCCGGTGCCGGCTCCACCGTTCAAATTCCTTGCCGTGGACCAGGCACTCCAAGTCCGCCGCCGGCGCCTCCCACTCTTCAGATCTTTCCCCCAAGTCAGTTGAATCCGCC ATCAGCATCAGCATCCCATCCTCCGCCAAAAGCGGCAGCGACGGCGACGGCGGCGGCGCGGCGGCTCACTCGTGTCCATCGAAAGGCCCATGCCTGTGCTCGCCGACTACTCATCCAGGCTCGTTCCGGTGCCGGCTCCACCGTTCAAATTCCTTGCCGTGGACCAGGCACTCCAAGTCCGCCGCCGGCGCCTCCCACTCTTCAGATCTTTCCCCCAAGTCAGTTGAATCCGCC ATCAGCATCAGCATCCCATCCTCCGCCAAAAGCGGCAGCGACGGCGACGGCGGCGGCGCGGCGGCTCACTCGTGTCCATCGAAAGGCCCATGCCTGTGCTCGCCGACTACTCATCCAGGCTCGTTCCGGTGCCGGCTCCACCGTTCAAATTCCTTGCCGTGGACCAGGCACTCCAAGTCCGCCGCCGGCGCCTCCCACTCTTCAGATCTTTCCCCCAAGTCAGTTGAATCCGCC ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSAAGASHSSDLSPKSVESA Homology
BLAST of MS003809 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23 Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of MS003809 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa]) HSP 1 Score: 110.2 bits (274), Expect = 8.4e-21 Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0
BLAST of MS003809 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus]) HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20 Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0
BLAST of MS003809 vs. NCBI nr
Match: DAD44710.1 (TPA_asm: hypothetical protein HUJ06_002940 [Nelumbo nucifera]) HSP 1 Score: 70.9 bits (172), Expect = 5.6e-09 Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 0
BLAST of MS003809 vs. NCBI nr
Match: KAE7998752.1 (hypothetical protein FH972_003263 [Carpinus fangiana]) HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08 Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0
BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21 Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0
BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20 Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0
BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A2P2P8K4 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09 Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0
BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08 Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0
BLAST of MS003809 vs. ExPASy TrEMBL
Match: V7C3S8 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G162800g PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07 Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 0
BLAST of MS003809 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05 Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MS003809 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05 Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS003809 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05 Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MS003809 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 45.1 bits (105), Expect = 3.1e-05 Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 0
BLAST of MS003809 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05 Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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