MS003809 (gene) Bitter gourd (TR) v1

Overview
NameMS003809
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine-rich protein-related
Locationscaffold127: 681646 .. 681879 (-)
RNA-Seq ExpressionMS003809
SyntenyMS003809
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAGCATCAGCATCCCATCCTCCGCCAAAAGCGGCAGCGACGGCGACGGCGGCGGCGCGGCGGCTCACTCGTGTCCATCGAAAGGCCCATGCCTGTGCTCGCCGACTACTCATCCAGGCTCGTTCCGGTGCCGGCTCCACCGTTCAAATTCCTTGCCGTGGACCAGGCACTCCAAGTCCGCCGCCGGCGCCTCCCACTCTTCAGATCTTTCCCCCAAGTCAGTTGAATCCGCC

mRNA sequence

ATCAGCATCAGCATCCCATCCTCCGCCAAAAGCGGCAGCGACGGCGACGGCGGCGGCGCGGCGGCTCACTCGTGTCCATCGAAAGGCCCATGCCTGTGCTCGCCGACTACTCATCCAGGCTCGTTCCGGTGCCGGCTCCACCGTTCAAATTCCTTGCCGTGGACCAGGCACTCCAAGTCCGCCGCCGGCGCCTCCCACTCTTCAGATCTTTCCCCCAAGTCAGTTGAATCCGCC

Coding sequence (CDS)

ATCAGCATCAGCATCCCATCCTCCGCCAAAAGCGGCAGCGACGGCGACGGCGGCGGCGCGGCGGCTCACTCGTGTCCATCGAAAGGCCCATGCCTGTGCTCGCCGACTACTCATCCAGGCTCGTTCCGGTGCCGGCTCCACCGTTCAAATTCCTTGCCGTGGACCAGGCACTCCAAGTCCGCCGCCGGCGCCTCCCACTCTTCAGATCTTTCCCCCAAGTCAGTTGAATCCGCC

Protein sequence

ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSAAGASHSSDLSPKSVESA
Homology
BLAST of MS003809 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23
Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSK- 60
          I ISIPSSAKS  DGD  G AAH+C SKG CLCSPTTHPGSFRCRLHRSNSLPWTRHSK 
Sbjct: 7  IRISIPSSAKSVGDGD--GVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKT 66

Query: 61 ---SAAGASHSSDLSPKSVES 78
             S+A ASH+SDLSPKSVES
Sbjct: 67 TASSSADASHTSDLSPKSVES 85

BLAST of MS003809 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.4e-21
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKS 60
          +SISIPS+AKS  DGD  G A HSC SK  CLCSPTTHPGSFRCRLHRSNSLPW+R SKS
Sbjct: 7  MSISIPSTAKSAGDGD--GVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 66

Query: 61 ---AAGASHSSDLSPKSVESA 79
             +A AS++SDLSPKSVESA
Sbjct: 67 TAASADASNTSDLSPKSVESA 85

BLAST of MS003809 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 1   ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKS 60
           +SI IPS+AKS  +GDG    +HSC SKG CLCSPTTHPGSFRCRLHRSNSLPW+R SKS
Sbjct: 42  MSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 101

Query: 61  ---AAGASHSSDLSPKSVESA 79
              +A AS++SDLSPKSVESA
Sbjct: 102 TAASADASNTSDLSPKSVESA 122

BLAST of MS003809 vs. NCBI nr
Match: DAD44710.1 (TPA_asm: hypothetical protein HUJ06_002940 [Nelumbo nucifera])

HSP 1 Score: 70.9 bits (172), Expect = 5.6e-09
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 2  SISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSA 61
          +I++ SS K G +G+     A S    G CLCSPTTH GSFRC+ HRS S  WTR SKS 
Sbjct: 7  TINVASSLK-GGNGESDSGPASSSKGGGQCLCSPTTHSGSFRCKFHRSLSSTWTRRSKSM 66

Query: 62 AGASHSSDLSPKSVES 78
          +G S    +SPKSVES
Sbjct: 67 SGNSSPPSISPKSVES 81

BLAST of MS003809 vs. NCBI nr
Match: KAE7998752.1 (hypothetical protein FH972_003263 [Carpinus fangiana])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 2  SISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSA 61
          S+++ +S KSG +   GGA   S   KG CLCSPTTH GSFRCR HRS+S  W + SKS 
Sbjct: 6  SLTVSTSPKSGKEEPVGGA---SSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMKRSKSV 65

Query: 62 -AGASHSSDLSPKSVES 78
           A  S  + +SPKS+ES
Sbjct: 66 PAKTSSVASMSPKSIES 79

BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKS 60
          +SISIPS+AKS  DGD  G A HSC SK  CLCSPTTHPGSFRCRLHRSNSLPW+R SKS
Sbjct: 7  MSISIPSTAKSAGDGD--GVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 66

Query: 61 ---AAGASHSSDLSPKSVESA 79
             +A AS++SDLSPKSVESA
Sbjct: 67 TAASADASNTSDLSPKSVESA 85

BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKS 60
          +SI IPS+AKS  +GDG    +HSC SKG CLCSPTTHPGSFRCRLHRSNSLPW+R SKS
Sbjct: 7  MSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 66

Query: 61 ---AAGASHSSDLSPKSVESA 79
             +A AS++SDLSPKSVESA
Sbjct: 67 TAASADASNTSDLSPKSVESA 87

BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A2P2P8K4 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 2  SISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSA 61
          SIS+ +++  G +G+G   A+ S P KG CLCSPTTH GSFRC+ HRS S  WT+ SKS 
Sbjct: 6  SISVSTTSPKGGNGEGNSTASSSSP-KGQCLCSPTTHQGSFRCKFHRSRSSAWTKPSKSM 65

Query: 62 AGASHSSDLSPKSVES 78
             +  + LSPKSV+S
Sbjct: 66 PPNNLITSLSPKSVDS 80

BLAST of MS003809 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 2  SISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKSA 61
          S+++ +S KSG +   GGA   S   KG CLCSPTTH GSFRCR HRS+S  W + SKS 
Sbjct: 6  SLTVSTSPKSGKEEPVGGA---SSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMKRSKSV 65

Query: 62 -AGASHSSDLSPKSVES 78
           A  S  + +SPKS+ES
Sbjct: 66 PAKTSSVASMSPKSIES 79

BLAST of MS003809 vs. ExPASy TrEMBL
Match: V7C3S8 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G162800g PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHR---SNSLPWTRH 60
          +++S    + SGS G GGG AA S P KGPCLCSPTTH GSFRCRLHR   ++   W + 
Sbjct: 10 LTVSTSPKSDSGSGGGGGGGAAGSLP-KGPCLCSPTTHEGSFRCRLHRGPTASPTNWMKR 69

Query: 61 SKSAAGASHS 68
          SKS     H+
Sbjct: 70 SKSMPANKHA 78

BLAST of MS003809 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKS 60
          + + I S   S  +    G +  +  +K  CLCSPTTHPGSFRCR+HRS SL  T+  ++
Sbjct: 14 MKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEA 73

Query: 61 AAGASHSSDLSPKSVES 78
          A+      D  PK  +S
Sbjct: 74 AS----LLDSPPKPADS 86

BLAST of MS003809 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 18 GGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSL 53
          GG +  +  +K  C+CSPTTHPGSF+C+LHR+ SL
Sbjct: 19 GGLSRQTSITKTICICSPTTHPGSFKCKLHRTPSL 53

BLAST of MS003809 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 1  ISISIPSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNSLPWTRHSKS 60
          + + I S   S  +    G +  +  +K  CLCSPTTHPGSFRCR+HRS SL  T+  ++
Sbjct: 14 MKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEA 73

Query: 61 AAGASHSSDLSPKSVES 78
          A+      D  PK  +S
Sbjct: 74 AS----LLDSPPKPADS 86

BLAST of MS003809 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 45.1 bits (105), Expect = 3.1e-05
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 0

Query: 6  PSSAKSGSDGDGGGAAAHSCPSKGPCLCSPTTHPGSFRCRLHRSNS 52
          P   + G  G G    + S   +  CLC+PTTHPGSFRCR HR N+
Sbjct: 40 PRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNA 85

BLAST of MS003809 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 0

Query: 31 CLCSPTTHPGSFRCRLHRSNSL 53
          CLCSPTTH GSFRCR HR +SL
Sbjct: 64 CLCSPTTHAGSFRCRYHRVDSL 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589904.14.0e-2380.25hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0046595.18.4e-2175.31hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK001... [more]
KAE8653119.12.4e-2072.84hypothetical protein Csa_020123 [Cucumis sativus][more]
DAD44710.15.6e-0953.95TPA_asm: hypothetical protein HUJ06_002940 [Nelumbo nucifera][more]
KAE7998752.14.8e-0853.25hypothetical protein FH972_003263 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJV54.1e-2175.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LWJ01.2e-2072.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1[more]
A0A2P2P8K41.2e-0952.63Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A5N6QHE22.3e-0853.25Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1[more]
V7C3S81.1e-0752.86Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G162800g PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G67910.11.1e-0540.26unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G24577.11.1e-0557.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G67910.21.1e-0540.26unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13227.13.1e-0547.83serine-rich protein-related [more]
AT5G55980.16.9e-0581.82serine-rich protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 13..76
NoneNo IPR availablePANTHERPTHR33132:SF37SERINE-RICH PROTEIN-LIKE PROTEINcoord: 13..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003809.1MS003809.1mRNA