MS003804 (gene) Bitter gourd (TR) v1

Overview


Name	MS003804
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold127: 664962 .. 665087 (+)
RNA-Seq Expression	MS003804
Synteny	MS003804

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATATGTTCCTATCTAAC

mRNA sequence

CACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATATGTTCCTATCTAAC

Coding sequence (CDS)

CACTTCGGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATATGTTCCTATCTAAC

Protein sequence

HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN

Homology

[Close]

BLAST of MS003804 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 82.8 bits (203), Expect = 7.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2214 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2255

[Close]

BLAST of MS003804 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 82.8 bits (203), Expect = 7.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2212 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2253

[Close]

BLAST of MS003804 vs. NCBI nr
Match: QJR53001.1 (hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical protein RF2 [Herpetospermum pedunculosum])

HSP 1 Score: 82.8 bits (203), Expect = 7.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2214 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2255

[Close]

BLAST of MS003804 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 7.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2216 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2257

[Close]

BLAST of MS003804 vs. NCBI nr
Match: YP_009752033.1 (Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys macranthus] >QIT05274.1 Ycf2 protein [Cionosicys macranthus] >QIT05292.1 Ycf2 protein [Cionosicys macranthus])

HSP 1 Score: 82.8 bits (203), Expect = 7.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2236 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2277

[Close]

BLAST of MS003804 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.6e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2230 HFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2271

[Close]

BLAST of MS003804 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.6e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2214 HFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2255

[Close]

BLAST of MS003804 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.6e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2212 HFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2253

[Close]

BLAST of MS003804 vs. ExPASy Swiss-Prot
Match: Q9B1K6 (Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLIHRQRWLRTN+SLSNGFFRSNT SESYQYLSNMFLSN
Sbjct: 2223 HFELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSN 2264

[Close]

BLAST of MS003804 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.6e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLIHRQRWLRT SSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2214 HFELLIHRQRWLRTKSSLSNGFFRSNTLSESYQYLSNLFLSN 2255

[Close]

BLAST of MS003804 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2212 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2253

[Close]

BLAST of MS003804 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2211 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2252

[Close]

BLAST of MS003804 vs. ExPASy TrEMBL
Match: A0A6H0EV63 (Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2222 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2263

[Close]

BLAST of MS003804 vs. ExPASy TrEMBL
Match: A0A6M3RUH1 (Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2214 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2255

[Close]

BLAST of MS003804 vs. ExPASy TrEMBL
Match: A0A6H0ESM3 (Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HFGLLIHRQRWLRTNSSLSNGFFRSNT SESYQYLSN+FLSN
Sbjct: 2214 HFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSN 2255

[Close]

BLAST of MS003804 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 75.9 bits (185), Expect = 8.8e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLI RQRWLRTNSSLSNGFFRSNT SESYQYLSN+F+SN
Sbjct: 2226 HFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISN 2267

[Close]

BLAST of MS003804 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 75.9 bits (185), Expect = 8.8e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1    HFGLLIHRQRWLRTNSSLSNGFFRSNTSSESYQYLSNMFLSN 43
            HF LLI RQRWLRTNSSLSNGFFRSNT SESYQYLSN+F+SN
Sbjct: 2226 HFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISN 2267

The following BLAST results are available for this feature:

BLAST of MS003804 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04093.1	7.7e-13	95.24	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
YP_009752370.1	7.7e-13	95.24	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]
QJR53001.1	7.7e-13	95.24	hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical ...	[more]
YP_010131137.1	7.7e-13	95.24	hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei...	[more]
YP_009752033.1	7.7e-13	95.24	Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys ma...	[more]

BLAST of MS003804 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A978	8.6e-15	92.86	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	8.6e-15	92.86	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	8.6e-15	92.86	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
Q9B1K6	1.1e-14	92.86	Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	5.6e-14	90.48	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS003804 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2F1	3.7e-13	95.24	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	3.7e-13	95.24	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EV63	3.7e-13	95.24	Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1	[more]
A0A6M3RUH1	3.7e-13	95.24	Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ESM3	3.7e-13	95.24	Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS003804 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	8.8e-15	88.10	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	8.8e-15	88.10	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..42
None	No IPR available	PANTHER	PTHR33078:SF65	SUBFAMILY NOT NAMED	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003804.1	MS003804.1	mRNA