MS003768 (gene) Bitter gourd (TR) v1

Overview
NameMS003768
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionfasciclin-like arabinogalactan protein 4
Locationscaffold127: 305204 .. 305326 (+)
RNA-Seq ExpressionMS003768
SyntenyMS003768
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAACATTATCAAATCCTTAATCGACAGGCATAACTTCAACATCGTTGCCTTGATGTTGTCGACATTGGGCACCATGGAGGAGTTCAAGACGGATGTAGGTGGCATCGAGCTCACGTTGTTC

mRNA sequence

TTGAACATTATCAAATCCTTAATCGACAGGCATAACTTCAACATCGTTGCCTTGATGTTGTCGACATTGGGCACCATGGAGGAGTTCAAGACGGATGTAGGTGGCATCGAGCTCACGTTGTTC

Coding sequence (CDS)

TTGAACATTATCAAATCCTTAATCGACAGGCATAACTTCAACATCGTTGCCTTGATGTTGTCGACATTGGGCACCATGGAGGAGTTCAAGACGGATGTAGGTGGCATCGAGCTCACGTTGTTC

Protein sequence

LNIIKSLIDRHNFNIVALMLSTLGTMEEFKTDVGGIELTLF
Homology
[Close]
BLAST of MS003768 vs. ExPASy TrEMBL
Match: A0A6P3ZA37 (fasciclin-like arabinogalactan protein 4 isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107411113 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1   LNIIKSLIDRHNFNIVALMLSTLGTMEEFKTDVGGIELTLF 42
           LNI K+LID HNFN+ A MLS  G +EEF+ D GG  +TLF
Sbjct: 201 LNITKALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 241

[Close]
BLAST of MS003768 vs. ExPASy TrEMBL
Match: A0A2P5AJJ1 (FAS1 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_326160 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1   LNIIKSLIDRHNFNIVALMLSTLGTMEEFKTDVGGIELTLF 42
           LNI K+LID HNFN+ A MLS  G +EEF+ D GG  +TLF
Sbjct: 205 LNITKTLIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 245

[Close]
BLAST of MS003768 vs. ExPASy TrEMBL
Match: A0A6J0ZX37 (fasciclin-like arabinogalactan protein 4 OS=Herrania umbratica OX=108875 GN=LOC110412928 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1   LNIIKSLIDRHNFNIVALMLSTLGTMEEFKTDVGGIELTLF 42
           LNI K+LID HNFN+ A MLS  G +EEF+ D GG  +TLF
Sbjct: 203 LNITKALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 243

[Close]
BLAST of MS003768 vs. ExPASy TrEMBL
Match: A0A6P3ZHA2 (fasciclin-like arabinogalactan protein 4 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107411113 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1   LNIIKSLIDRHNFNIVALMLSTLGTMEEFKTDVGGIELTLF 42
           LNI K+LID HNFN+ A MLS  G +EEF+ D GG  +TLF
Sbjct: 201 LNITKALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 241

[Close]
BLAST of MS003768 vs. ExPASy TrEMBL
Match: A0A1R3HBN2 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20338 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1   LNIIKSLIDRHNFNIVALMLSTLGTMEEFKTDVGGIELTLF 42
           LNI K+LID HNFN+ A MLS  G +EEF+ D GG  +TLF
Sbjct: 201 LNITKALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 241

The following BLAST results are available for this feature:
BLAST of MS003768 vs.
Match NameE-valueIdentityDescription
BLAST of MS003768 vs.
Match NameE-valueIdentityDescription
BLAST of MS003768 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P3ZA375.3e-0460.98fasciclin-like arabinogalactan protein 4 isoform X1 OS=Ziziphus jujuba OX=326968... [more]
A0A2P5AJJ15.3e-0460.98FAS1 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_32... [more]
A0A6J0ZX375.3e-0460.98fasciclin-like arabinogalactan protein 4 OS=Herrania umbratica OX=108875 GN=LOC1... [more]
A0A6P3ZHA25.3e-0460.98fasciclin-like arabinogalactan protein 4 isoform X2 OS=Ziziphus jujuba OX=326968... [more]
A0A1R3HBN25.3e-0460.98Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20338 PE=3 ... [more]
BLAST of MS003768 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003768.1MS003768.1mRNA