MS003738 (gene) Bitter gourd (TR) v1

Overview
NameMS003738
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEpidermal patterning factor-like protein
Locationscaffold127: 102486 .. 102749 (-)
RNA-Seq ExpressionMS003738
SyntenyMS003738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCAGGTGTGGGTTATTCAAAGGAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCCTGAATTGCAGGCCATGTGTTGCTGCTTTGGTCATCTCTCAGCGCCATAAGGAATCAGGTGATGGTCTTAATTATAGTGCTGCTGTTCCTATTCCTAATGCTAATTTGGAAGCCACTAGACTCCCCAGGGATGATTCCTATTATCTCCTCTCATGGAAATGCAAATGTAAAGATAAGTACTTTCAGCCT

mRNA sequence

CTCTCAGGTGTGGGTTATTCAAAGGAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCCTGAATTGCAGGCCATGTGTTGCTGCTTTGGTCATCTCTCAGCGCCATAAGGAATCAGGTGATGGTCTTAATTATAGTGCTGCTGTTCCTATTCCTAATGCTAATTTGGAAGCCACTAGACTCCCCAGGGATGATTCCTATTATCTCCTCTCATGGAAATGCAAATGTAAAGATAAGTACTTTCAGCCT

Coding sequence (CDS)

CTCTCAGGTGTGGGTTATTCAAAGGAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCCTGAATTGCAGGCCATGTGTTGCTGCTTTGGTCATCTCTCAGCGCCATAAGGAATCAGGTGATGGTCTTAATTATAGTGCTGCTGTTCCTATTCCTAATGCTAATTTGGAAGCCACTAGACTCCCCAGGGATGATTCCTATTATCTCCTCTCATGGAAATGCAAATGTAAAGATAAGTACTTTCAGCCT

Protein sequence

LSGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANLEATRLPRDDSYYLLSWKCKCKDKYFQP
Homology
[Close]
BLAST of MS003738 vs. NCBI nr
Match: XP_022145029.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 2   SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 61
           SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL
Sbjct: 26  SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 85

Query: 62  EATRLPRDDSYYLLSWKCKCKDKYFQP 89
           EATRLPRDDSYYLLSWKCKCKDKYFQP
Sbjct: 86  EATRLPRDDSYYLLSWKCKCKDKYFQP 112

[Close]
BLAST of MS003738 vs. NCBI nr
Match: XP_022933440.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X1 [Cucurbita moschata] >KAG6587897.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 8.0e-28
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 1   LSGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNAN 60
           +SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQRHK  GD  N    V    +N
Sbjct: 28  ISGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRHK--GDDSNNGGVV----SN 87

Query: 61  LEATRLPRDDSYYLLSWKCKCKDKYFQP 89
           LEA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 88  LEAAQVPKDDAYYLLSWKCKCKDKYFQP 109

[Close]
BLAST of MS003738 vs. NCBI nr
Match: XP_023531006.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 8.0e-28
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 1   LSGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNAN 60
           +SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQRHK  GD  N    V    +N
Sbjct: 77  ISGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRHK--GDDSNNGGVV----SN 136

Query: 61  LEATRLPRDDSYYLLSWKCKCKDKYFQP 89
           LEA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 137 LEAAQVPKDDAYYLLSWKCKCKDKYFQP 158

[Close]
BLAST of MS003738 vs. NCBI nr
Match: XP_022933441.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7021781.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 2   SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 61
           SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQRHK  GD  N    V    +NL
Sbjct: 24  SGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRHK--GDDSNNGGVV----SNL 83

Query: 62  EATRLPRDDSYYLLSWKCKCKDKYFQP 89
           EA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 84  EAAQVPKDDAYYLLSWKCKCKDKYFQP 104

[Close]
BLAST of MS003738 vs. NCBI nr
Match: XP_023531007.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 2   SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 61
           SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQRHK  GD  N    V    +NL
Sbjct: 73  SGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRHK--GDDSNNGGVV----SNL 132

Query: 62  EATRLPRDDSYYLLSWKCKCKDKYFQP 89
           EA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 133 EAAQVPKDDAYYLLSWKCKCKDKYFQP 153

[Close]
BLAST of MS003738 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 26/81 (32.10%), Postives = 41/81 (50.62%), Query Frame = 0 

Query: 9   EKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLN-YSAAVPIPNANLEATRLP 68
           E +  +GS PP C N+C NC PC+A  V +   +     +N +S     P ++L  T L 
Sbjct: 43  EDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSL-TTVLD 102

Query: 69  RDDSYYLLSWKCKCKDKYFQP 89
           +  +Y  + WKC C   ++ P
Sbjct: 103 QYSNYKPMGWKCHCNGHFYNP 122

[Close]
BLAST of MS003738 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 26/80 (32.50%), Postives = 36/80 (45.00%), Query Frame = 0 

Query: 10 KELVIGSRPPQCFNKCLNCRPCVAALV-ISQRHKESGDGLNYSAAVPIPNANLEATRLPR 69
          KE V+GS PP C  KC NC+PC+  L  I   H +  D                      
Sbjct: 42 KESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDD---------------------- 99

Query: 70 DDSYYLLSWKCKCKDKYFQP 89
           + YY + W C+C+D+ F+P
Sbjct: 102 SEPYYPVKWICRCRDRVFEP 99

[Close]
BLAST of MS003738 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 25/77 (32.47%), Postives = 39/77 (50.65%), Query Frame = 0 

Query: 13  VIGSRPPQCFN-KCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANLEATRLPRDDS 72
           +IGSRPP+C   +C +C  C A  V +    +    L  S++      +L+ TR     +
Sbjct: 52  LIGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTN 111

Query: 73  YYLLSWKCKCKDKYFQP 89
           Y  +SWKCKC +  + P
Sbjct: 112 YKPMSWKCKCGNSIYNP 128

[Close]
BLAST of MS003738 vs. ExPASy TrEMBL
Match: A0A6J1CU06 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111014553 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.2e-46
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 2   SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 61
           SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL
Sbjct: 26  SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 85

Query: 62  EATRLPRDDSYYLLSWKCKCKDKYFQP 89
           EATRLPRDDSYYLLSWKCKCKDKYFQP
Sbjct: 86  EATRLPRDDSYYLLSWKCKCKDKYFQP 112

[Close]
BLAST of MS003738 vs. ExPASy TrEMBL
Match: A0A6J1F4W6 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 1   LSGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNAN 60
           +SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQRHK  GD  N    V    +N
Sbjct: 28  ISGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRHK--GDDSNNGGVV----SN 87

Query: 61  LEATRLPRDDSYYLLSWKCKCKDKYFQP 89
           LEA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 88  LEAAQVPKDDAYYLLSWKCKCKDKYFQP 109

[Close]
BLAST of MS003738 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.6e-28
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 2   SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 61
           SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQRHK  GD  N    V    +NL
Sbjct: 24  SGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRHK--GDDSNNGGVV----SNL 83

Query: 62  EATRLPRDDSYYLLSWKCKCKDKYFQP 89
           EA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 84  EAAQVPKDDAYYLLSWKCKCKDKYFQP 104

[Close]
BLAST of MS003738 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.0e-25
Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 2   SGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANL 61
           SG   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQR K  G   N    V    +N+
Sbjct: 90  SGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRLK--GYDNNNGGVV----SNM 149

Query: 62  EATRLPRDDSYYLLSWKCKCKDKYFQP 89
           EA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 150 EAAQVPKDDAYYLLSWKCKCKDKYFQP 170

[Close]
BLAST of MS003738 vs. ExPASy TrEMBL
Match: A0A6J1I8G8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.0e-25
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 0 

Query: 1   LSGVGYSKEKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNAN 60
           ++G   SK+KEL IGSRPP+CFNKCLNC+PCVAALVISQR K  G   N    V    +N
Sbjct: 94  ITGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVISQRLK--GYDNNNGGVV----SN 153

Query: 61  LEATRLPRDDSYYLLSWKCKCKDKYFQP 89
           +EA ++P+DD+YYLLSWKCKCKDKYFQP
Sbjct: 154 MEAAQVPKDDAYYLLSWKCKCKDKYFQP 175

[Close]
BLAST of MS003738 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-08
Identity = 26/80 (32.50%), Postives = 36/80 (45.00%), Query Frame = 0 

Query: 10 KELVIGSRPPQCFNKCLNCRPCVAALV-ISQRHKESGDGLNYSAAVPIPNANLEATRLPR 69
          KE V+GS PP C  KC NC+PC+  L  I   H +  D                      
Sbjct: 42 KESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDD---------------------- 99

Query: 70 DDSYYLLSWKCKCKDKYFQP 89
           + YY + W C+C+D+ F+P
Sbjct: 102 SEPYYPVKWICRCRDRVFEP 99

[Close]
BLAST of MS003738 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-08
Identity = 26/81 (32.10%), Postives = 41/81 (50.62%), Query Frame = 0 

Query: 9   EKELVIGSRPPQCFNKCLNCRPCVAALVISQRHKESGDGLN-YSAAVPIPNANLEATRLP 68
           E +  +GS PP C N+C NC PC+A  V +   +     +N +S     P ++L  T L 
Sbjct: 43  EDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSL-TTVLD 102

Query: 69  RDDSYYLLSWKCKCKDKYFQP 89
           +  +Y  + WKC C   ++ P
Sbjct: 103 QYSNYKPMGWKCHCNGHFYNP 122

[Close]
BLAST of MS003738 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 25/77 (32.47%), Postives = 39/77 (50.65%), Query Frame = 0 

Query: 13  VIGSRPPQCFN-KCLNCRPCVAALVISQRHKESGDGLNYSAAVPIPNANLEATRLPRDDS 72
           +IGSRPP+C   +C +C  C A  V +    +    L  S++      +L+ TR     +
Sbjct: 52  LIGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTN 111

Query: 73  YYLLSWKCKCKDKYFQP 89
           Y  +SWKCKC +  + P
Sbjct: 112 YKPMSWKCKCGNSIYNP 128

The following BLAST results are available for this feature:
BLAST of MS003738 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145029.11.9e-45100.00EPIDERMAL PATTERNING FACTOR-like protein 8 [Momordica charantia][more]
XP_022933440.18.0e-2870.45EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X1 [Cucurbita moschata] >KAG6... [more]
XP_023531006.18.0e-2870.45EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022933441.11.8e-2771.26EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7... [more]
XP_023531007.11.8e-2771.26EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pep... [more]
BLAST of MS003738 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFT51.4e-0632.10EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q1G3V91.4e-0632.50EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9T0682.0e-0532.47EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
BLAST of MS003738 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CU069.2e-46100.00Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1F4W63.9e-2870.45Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1EZ198.6e-2871.26Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I4N24.0e-2567.82Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1I8G84.0e-2565.91Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
BLAST of MS003738 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80133.19.8e-0832.50unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot... [more]
AT5G10310.19.8e-0832.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G37810.11.4e-0632.47unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 13..88
e-value: 2.7E-19
score: 68.9
NoneNo IPR availablePANTHERPTHR33109:SF57EPIDERMAL PATTERNING FACTOR-LIKE PROTEINcoord: 8..88
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 8..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003738.1MS003738.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010374 stomatal complex development