MS003619 (gene) Bitter gourd (TR) v1

Overview


Name	MS003619
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L26
Location	scaffold963: 139098 .. 139535 (-)
RNA-Seq Expression	MS003619
Synteny	MS003619

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGCAAGAACCGCAAGGCCCACTTCACGGCGCCGTCGAGCGTCCGCCGGATTCTGATGAGCGCCCCCCTCTCCGGCGACCTGCGCTCCAAGTACAATGTCCGCTCGATGCCGGTTCGCAAGGACGACGAGGTTCAGGTCTTGAGAGGGACCTACAAAGGCCGTGAAGGCAAGGTCGTGCAGGTCTACCGTCGGAAGTGGGTCATCCACATCGAGCGGATCACCAGGGAGAAGGTGAACGGCTCCACCGTCAACGTCGGAATCAATCCCTCCAAGGTTATGATCACGAAGCTCAAGCTCGACAAGGACCGCAAGTCGCTGCTCGATCGTAAGGCCAAGGGTCGCGCTTCTGCCGATAAGGATAAGGGCACTAAATTCACCGCGGAGGATATCATGCAAAGCGTCGAC

mRNA sequence

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGCAAGAACCGCAAGGCCCACTTCACGGCGCCGTCGAGCGTCCGCCGGATTCTGATGAGCGCCCCCCTCTCCGGCGACCTGCGCTCCAAGTACAATGTCCGCTCGATGCCGGTTCGCAAGGACGACGAGGTTCAGGTCTTGAGAGGGACCTACAAAGGCCGTGAAGGCAAGGTCGTGCAGGTCTACCGTCGGAAGTGGGTCATCCACATCGAGCGGATCACCAGGGAGAAGGTGAACGGCTCCACCGTCAACGTCGGAATCAATCCCTCCAAGGTTATGATCACGAAGCTCAAGCTCGACAAGGACCGCAAGTCGCTGCTCGATCGTAAGGCCAAGGGTCGCGCTTCTGCCGATAAGGATAAGGGCACTAAATTCACCGCGGAGGATATCATGCAAAGCGTCGAC

Coding sequence (CDS)

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGCAAGAACCGCAAGGCCCACTTCACGGCGCCGTCGAGCGTCCGCCGGATTCTGATGAGCGCCCCCCTCTCCGGCGACCTGCGCTCCAAGTACAATGTCCGCTCGATGCCGGTTCGCAAGGACGACGAGGTTCAGGTCTTGAGAGGGACCTACAAAGGCCGTGAAGGCAAGGTCGTGCAGGTCTACCGTCGGAAGTGGGTCATCCACATCGAGCGGATCACCAGGGAGAAGGTGAACGGCTCCACCGTCAACGTCGGAATCAATCCCTCCAAGGTTATGATCACGAAGCTCAAGCTCGACAAGGACCGCAAGTCGCTGCTCGATCGTAAGGCCAAGGGTCGCGCTTCTGCCGATAAGGATAAGGGCACTAAATTCACCGCGGAGGATATCATGCAAAGCGTCGAC

Protein sequence

MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDRKAKGRASADKDKGTKFTAEDIMQSVD

Homology

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BLAST of MS003619 vs. NCBI nr
Match: XP_022149443.1 (60S ribosomal protein L26-1-like [Momordica charantia])

HSP 1 Score: 280.4 bits (716), Expect = 8.8e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of MS003619 vs. NCBI nr
Match: XP_008457837.1 (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S ribosomal protein L26-1-like [Benincasa hispida] >KAA0045834.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa] >TYJ99449.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.2e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. NCBI nr
Match: XP_022948229.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023532418.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6605230.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035196.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNGSTVNVG+NPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. NCBI nr
Match: XP_022931741.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023521000.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6571308.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019317.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.2 bits (700), Expect = 6.3e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGINPSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. NCBI nr
Match: XP_010102767.1 (60S ribosomal protein L26-1 [Morus notabilis] >EXB94051.1 60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFTAPSSVRR+LMSAPLSGDLRSKYNVRSMPVRKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

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BLAST of MS003619 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 251.9 bits (642), Expect = 4.4e-66
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLS DLR KYNVRSMP+RKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

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BLAST of MS003619 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR+K+NVRSMP+RKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

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BLAST of MS003619 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-60
Identity = 116/145 (80.00%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HFTA SS RR+ MS+PLS DLR KYNVRSMP+RKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSV 146
           KAKGRA+ADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of MS003619 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF APS +RR +MS+PLS +LR KYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of MS003619 vs. ExPASy Swiss-Prot
Match: P61254 (60S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF APS +RR +MS+PLS +LR KYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of MS003619 vs. ExPASy TrEMBL
Match: A0A6J1D6T1 (60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. ExPASy TrEMBL
Match: A0A5A7TS06 (60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00090 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. ExPASy TrEMBL
Match: A0A1S3C7Q4 (60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. ExPASy TrEMBL
Match: A0A6J1L4P7 (60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNGSTVNVG+NPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. ExPASy TrEMBL
Match: A0A6J1G998 (60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451868 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNGSTVNVG+NPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of MS003619 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-67
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLS DLR KYNVRSMP+RKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of MS003619 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-66
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR+K+NVRSMP+RKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of MS003619 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149443.1	8.8e-72	100.00	60S ribosomal protein L26-1-like [Momordica charantia]	[more]
XP_008457837.1	2.2e-70	97.26	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S r...	[more]
XP_022948229.1	2.8e-70	95.89	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S riboso...	[more]
XP_022931741.1	6.3e-70	95.89	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S riboso...	[more]
XP_010102767.1	1.4e-69	95.89	60S ribosomal protein L26-1 [Morus notabilis] >EXB94051.1 60S ribosomal protein ...	[more]

BLAST of MS003619 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	4.4e-66	85.62	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	1.7e-65	84.93	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	1.2e-60	80.00	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
P61257	2.1e-44	67.61	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]
P61254	2.1e-44	67.61	60S ribosomal protein L26 OS=Homo sapiens OX=9606 GN=RPL26 PE=1 SV=1	[more]

BLAST of MS003619 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6T1	4.3e-72	100.00	60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 ...	[more]
A0A5A7TS06	1.0e-70	97.26	60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C7Q4	1.0e-70	97.26	60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV...	[more]
A0A6J1L4P7	1.4e-70	95.89	60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=...	[more]
A0A6J1G998	1.4e-70	95.89	60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451868 P...	[more]

BLAST of MS003619 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	3.1e-67	85.62	Translation protein SH3-like family protein	[more]
AT5G67510.1	1.2e-66	84.93	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 8.9E-6 score: 35.2
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 1.8E-9 score: 37.2
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 1.2E-38 score: 132.0
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 3.2E-52 score: 173.8
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20.761597
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..144 e-value: 2.5E-57 score: 194.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11143:SF15	60S RIBOSOMAL PROTEIN L26-1-LIKE	coord: 1..146
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 3.25155E-16 score: 66.3842
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003619.1	MS003619.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome