MS003565 (gene) Bitter gourd (TR) v1

Overview


Name	MS003565
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Tubulin-folding cofactor E
Location	scaffold234: 3593970 .. 3595001 (-)
RNA-Seq Expression	MS003565
Synteny	MS003565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGATCTGTTTTTCAGCCTGTGTCATCCCCTATGGTCCAAGGATTTAATCTTCTGCGACTTTTGAATCTTGAAAATAACCGTATAGCTGAATGGAATGAAATCTTGAAACTTTGTCAATTAAGAAGGTATCGTCTTTTATTTTGTTCTTTCTTCTATTGGGATAATTGGCGGTTGATCAACCCTAAGCTTATTTCACCATATTTGGAACCTTTGACTATGCTATCAGCTTGGAGCAGATTCAGTTGAATAACAACAAATTGAGCCGTATATTTTATCCTCGCTTGTATGAATTGAACGAGTTATTTGGAGGTGTTGAATCACCGGGAGACAATTTTCCATTCCAAAATTTGCGATGCCTCCTTCTTGGTAGATCATCAAGGCTCTTTAACAATTGATATCTCTTTATAGATTGTGTTAGTTAGTTCTCTGATTTCTTTTGTTTCTCTATATACTTCAGGAGGCAACAACATCGAGGATTTTGCCTCCATCGACTGTTTAAACTCATTCCCTCAGTTGATTGTAAGATTTCAATATATATGCACTATCTTTTATTCCTTTTCGAATTGAAGTTATTGGTAATTTCAATTCTTGATCGAGCTGTGCAATTATTGAAGAAGATTTAACTTTTGGATACTTCATATATTATTAACAATACAAGGATAGTTGTTATAGTTGAATTAATTTTTTTAAAAATTTTTATTGATGAATATAGTTGAATTAAAATATAATAACATTGTTCTTTGTCGTTCACTTCTCTCCATAGTGTTATTTATTCATTTTCTTTTTCCTTCAAGGACATCAGGCTCTCAGAGAATCTAATAGCTGATCCTGGAAGGGGTGGGATTCCCAGATATGTTTTAATTGCACGATTGTCTAAAGTTCAAATAATAAATGGGAGTGAGGTGGTTTGGTAGCATTTGAAGTCCTTTTTCTTTTCCTTATCATTGCATTGTTGTTAACCCGAGGACTTTACCTCATATTTTATAGGTAACTCCTCGTGAAAGAAGAGACTCTGAAATACGGTATGGA

mRNA sequence

TTGAGATCTGTTTTTCAGCCTGTGTCATCCCCTATGGTCCAAGGATTTAATCTTCTGCGACTTTTGAATCTTGAAAATAACCGTATAGCTGAATGGAATGAAATCTTGAAACTTTGTCAATTAAGAAGCTTGGAGCAGATTCAGTTGAATAACAACAAATTGAGCCGTATATTTTATCCTCGCTTGTATGAATTGAACGAGTTATTTGGAGGTGTTGAATCACCGGGAGACAATTTTCCATTCCAAAATTTGCGATGCCTCCTTCTTGGAGGCAACAACATCGAGGATTTTGCCTCCATCGACTGTTTAAACTCATTCCCTCAGTTGATTGACATCAGGCTCTCAGAGAATCTAATAGCTGATCCTGGAAGGGGTGGGATTCCCAGATATGTTTTAATTGCACGATTGTCTAAAGTTCAAATAATAAATGGGAGTGAGGTGGTAACTCCTCGTGAAAGAAGAGACTCTGAAATACGGTATGGA

Coding sequence (CDS)

TTGAGATCTGTTTTTCAGCCTGTGTCATCCCCTATGGTCCAAGGATTTAATCTTCTGCGACTTTTGAATCTTGAAAATAACCGTATAGCTGAATGGAATGAAATCTTGAAACTTTGTCAATTAAGAAGCTTGGAGCAGATTCAGTTGAATAACAACAAATTGAGCCGTATATTTTATCCTCGCTTGTATGAATTGAACGAGTTATTTGGAGGTGTTGAATCACCGGGAGACAATTTTCCATTCCAAAATTTGCGATGCCTCCTTCTTGGAGGCAACAACATCGAGGATTTTGCCTCCATCGACTGTTTAAACTCATTCCCTCAGTTGATTGACATCAGGCTCTCAGAGAATCTAATAGCTGATCCTGGAAGGGGTGGGATTCCCAGATATGTTTTAATTGCACGATTGTCTAAAGTTCAAATAATAAATGGGAGTGAGGTGGTAACTCCTCGTGAAAGAAGAGACTCTGAAATACGGTATGGA

Protein sequence

LRSVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRYG

Homology

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BLAST of MS003565 vs. NCBI nr
Match: XP_022152477.1 (tubulin-folding cofactor E [Momordica charantia] >XP_022152478.1 tubulin-folding cofactor E [Momordica charantia])

HSP 1 Score: 304.7 bits (779), Expect = 4.8e-79
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S   PVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYP L
Sbjct: 247 SAITPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPCL 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
           YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP
Sbjct: 307 YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
           GRGGIPRYVLIARLSKVQIINGSE VTPRERRDSEIRY
Sbjct: 367 GRGGIPRYVLIARLSKVQIINGSE-VTPRERRDSEIRY 403

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BLAST of MS003565 vs. NCBI nr
Match: XP_008445988.1 (PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo] >XP_008445989.1 PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo] >XP_008445990.1 PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo] >KAA0034159.1 tubulin-folding cofactor E isoform X2 [Cucumis melo var. makuwa] >TYK15760.1 tubulin-folding cofactor E isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 133/158 (84.18%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L
Sbjct: 247 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLRSLEQIQLNNNKLSHIFYPNL 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID LNSFP LIDIRLSEN IADP
Sbjct: 307 DELHELFGDVELQGDCFPFQNLRCLFLGGNNIDDLASIDVLNSFPNLIDIRLSENPIADP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Sbjct: 367 MRGGIPRYVLIARLSKIQIINGSE-VTPRERRDSEIRY 403

[Close]

BLAST of MS003565 vs. NCBI nr
Match: XP_008445986.1 (PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 133/158 (84.18%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L
Sbjct: 288 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLRSLEQIQLNNNKLSHIFYPNL 347

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID LNSFP LIDIRLSEN IADP
Sbjct: 348 DELHELFGDVELQGDCFPFQNLRCLFLGGNNIDDLASIDVLNSFPNLIDIRLSENPIADP 407

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Sbjct: 408 MRGGIPRYVLIARLSKIQIINGSE-VTPRERRDSEIRY 444

[Close]

BLAST of MS003565 vs. NCBI nr
Match: XP_008445987.1 (PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 5.7e-64
Identity = 133/158 (84.18%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L
Sbjct: 256 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLRSLEQIQLNNNKLSHIFYPNL 315

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID LNSFP LIDIRLSEN IADP
Sbjct: 316 DELHELFGDVELQGDCFPFQNLRCLFLGGNNIDDLASIDVLNSFPNLIDIRLSENPIADP 375

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Sbjct: 376 MRGGIPRYVLIARLSKIQIINGSE-VTPRERRDSEIRY 412

[Close]

BLAST of MS003565 vs. NCBI nr
Match: XP_011660193.1 (tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736058.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736059.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736060.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736061.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736062.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736063.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus] >KAE8653555.1 hypothetical protein Csa_006893 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QL+SLEQIQLNNNKLS IFYP L
Sbjct: 247 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLKSLEQIQLNNNKLSHIFYPNL 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VES GD FPFQNLRCL LGGNNI+  ASID LNSFP LIDIRLSEN IADP
Sbjct: 307 NELHELFGDVESQGDCFPFQNLRCLFLGGNNIDHLASIDVLNSFPNLIDIRLSENPIADP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVL+ARLSK+Q+INGSE VTPRERRDSEIRY
Sbjct: 367 MRGGIPRYVLVARLSKIQVINGSE-VTPRERRDSEIRY 403

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BLAST of MS003565 vs. ExPASy Swiss-Prot
Match: Q8GRL7 (Tubulin-folding cofactor E OS=Arabidopsis thaliana OX=3702 GN=TFCE PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-42
Identity = 92/158 (58.23%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S     SS   Q FN LRLLNL++N I++W+E+LKL QL  LEQ+ LN NKLSRIF    
Sbjct: 247 STITSTSSSDDQAFNSLRLLNLDDNCISDWSEVLKLSQLPCLEQLYLNKNKLSRIF---- 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
                + G   S   + PF +L CLLLG NNI D AS+D LN FPQL+DIRLSEN I+DP
Sbjct: 307 ---QSVNGTESSEKGSDPFPSLSCLLLGANNIGDLASVDALNGFPQLVDIRLSENPISDP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGG+PR+VL+ARL+KVQ++NGSE V  RE++DSEIRY
Sbjct: 367 VRGGVPRFVLVARLTKVQVLNGSE-VRAREKKDSEIRY 396

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BLAST of MS003565 vs. ExPASy Swiss-Prot
Match: Q8C5W3 (Tubulin-specific chaperone cofactor E-like protein OS=Mus musculus OX=10090 GN=Tbcel PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 5   FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLY 64
           ++ VS P V   + L+LL++ +N + +W EI KL     SL+ + L NN L+        
Sbjct: 163 YETVSCPSV-CCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLN-------- 222

Query: 65  ELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIAD 124
                   +E P D+    F NLR + L  + ++ +  ID LNSFP+L ++RL    +  
Sbjct: 223 -------AIEEPADSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQ 282

Query: 125 PGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY 161
           P      R +++ARL  V  +NGS VVT  ER DSE   IRY
Sbjct: 283 PYTTEERRKLVVARLPSVSKLNGS-VVTDGEREDSERFFIRY 307

[Close]

BLAST of MS003565 vs. ExPASy Swiss-Prot
Match: Q5PQJ7 (Tubulin-specific chaperone cofactor E-like protein OS=Rattus norvegicus OX=10116 GN=Tbcel PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 5   FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLY 64
           ++ VS P V   + L+LL++ +N + EW EI KL     SL+ + L NN ++        
Sbjct: 163 YETVSCPSV-CCHSLKLLHITDNNLQEWTEIRKLGVMFPSLDTLVLANNHVN-------- 222

Query: 65  ELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIAD 124
                   +E P D+    F NLR + L  + ++ +  ID LNSFP+L ++RL    +  
Sbjct: 223 -------AIEEPADSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQ 282

Query: 125 PGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY 161
           P      R +++ARL  V  +NGS VVT  ER DSE   IRY
Sbjct: 283 PYTTEERRKLVVARLPSVSKLNGS-VVTDGEREDSERFFIRY 307

[Close]

BLAST of MS003565 vs. ExPASy Swiss-Prot
Match: Q5QJ74 (Tubulin-specific chaperone cofactor E-like protein OS=Homo sapiens OX=9606 GN=TBCEL PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 5   FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLY 64
           ++ VS P +   + L+LL++ +N + +W EI KL     SL+ + L NN L+        
Sbjct: 163 YETVSCPSI-CCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLN-------- 222

Query: 65  ELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIAD 124
                   +E P D+    F NLR + L  + ++ +  ID LNSFP+L ++RL    +  
Sbjct: 223 -------AIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQ 282

Query: 125 PGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY 161
           P      R ++IARL  V  +NGS VVT  ER DSE   IRY
Sbjct: 283 PYTTEERRKLVIARLPSVSKLNGS-VVTDGEREDSERFFIRY 307

[Close]

BLAST of MS003565 vs. ExPASy Swiss-Prot
Match: Q5U508 (Tubulin-specific chaperone E OS=Xenopus laevis OX=8355 GN=tbce PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 39/149 (26.17%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 13  VQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGV 72
           V     L +L++ NN+I + N++  +  L  L+Q+ ++NN +S I +P +          
Sbjct: 244 VNNLQNLTILDISNNKIVDGNQLHTIAFLPRLKQVIVSNNIISSISFPDV---------- 303

Query: 73  ESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADPGRG-GIPRYV 132
              G    F +L  L + GNNI ++  I+ L+    L  +    N + D  +     R +
Sbjct: 304 -DFGHTAMFISLTSLAVNGNNISEWCVINELHKLLHLESLNCHGNPLMDLDKNPETVRQL 363

Query: 133 LIARLSKVQIINGSEVVTPRERRDSEIRY 161
           +IA++  ++ +N +E+  P ERR +E+ Y
Sbjct: 364 IIAKIENLKFLNKTEIF-PTERRGAELDY 380

[Close]

BLAST of MS003565 vs. ExPASy TrEMBL
Match: A0A6J1DEY9 (Tubulin-folding cofactor E OS=Momordica charantia OX=3673 GN=LOC111020198 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.3e-79
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S   PVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYP L
Sbjct: 247 SAITPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPCL 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
           YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP
Sbjct: 307 YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
           GRGGIPRYVLIARLSKVQIINGSE VTPRERRDSEIRY
Sbjct: 367 GRGGIPRYVLIARLSKVQIINGSE-VTPRERRDSEIRY 403

[Close]

BLAST of MS003565 vs. ExPASy TrEMBL
Match: A0A1S3BEU4 (Tubulin-folding cofactor E OS=Cucumis melo OX=3656 GN=LOC103488852 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.8e-64
Identity = 133/158 (84.18%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L
Sbjct: 247 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLRSLEQIQLNNNKLSHIFYPNL 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID LNSFP LIDIRLSEN IADP
Sbjct: 307 DELHELFGDVELQGDCFPFQNLRCLFLGGNNIDDLASIDVLNSFPNLIDIRLSENPIADP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Sbjct: 367 MRGGIPRYVLIARLSKIQIINGSE-VTPRERRDSEIRY 403

[Close]

BLAST of MS003565 vs. ExPASy TrEMBL
Match: A0A5A7SYG1 (Tubulin-folding cofactor E OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002640 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.8e-64
Identity = 133/158 (84.18%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L
Sbjct: 247 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLRSLEQIQLNNNKLSHIFYPNL 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID LNSFP LIDIRLSEN IADP
Sbjct: 307 DELHELFGDVELQGDCFPFQNLRCLFLGGNNIDDLASIDVLNSFPNLIDIRLSENPIADP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Sbjct: 367 MRGGIPRYVLIARLSKIQIINGSE-VTPRERRDSEIRY 403

[Close]

BLAST of MS003565 vs. ExPASy TrEMBL
Match: A0A0A0LXN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650070 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.8e-64
Identity = 130/156 (83.33%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 6   QPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYEL 65
           +P SS MV+GFNLLRLLNLENN IAEWNEILKL QL+SLEQIQLNNNKLS IFYP L EL
Sbjct: 6   RPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLKSLEQIQLNNNKLSHIFYPNLNEL 65

Query: 66  NELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADPGRG 125
           +ELFG VES GD FPFQNLRCL LGGNNI+  ASID LNSFP LIDIRLSEN IADP RG
Sbjct: 66  HELFGDVESQGDCFPFQNLRCLFLGGNNIDHLASIDVLNSFPNLIDIRLSENPIADPMRG 125

Query: 126 GIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRYG 162
           GIPRYVL+ARLSK+Q+INGSE VTPRERRDSEIRYG
Sbjct: 126 GIPRYVLVARLSKIQVINGSE-VTPRERRDSEIRYG 160

[Close]

BLAST of MS003565 vs. ExPASy TrEMBL
Match: A0A1S3BEN9 (Tubulin-folding cofactor E OS=Cucumis melo OX=3656 GN=LOC103488852 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.8e-64
Identity = 133/158 (84.18%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L
Sbjct: 256 SEVKPESSSMVEGFNLLRLLNLENNCIAEWNEILKLGQLRSLEQIQLNNNKLSHIFYPNL 315

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
            EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID LNSFP LIDIRLSEN IADP
Sbjct: 316 DELHELFGDVELQGDCFPFQNLRCLFLGGNNIDDLASIDVLNSFPNLIDIRLSENPIADP 375

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Sbjct: 376 MRGGIPRYVLIARLSKIQIINGSE-VTPRERRDSEIRY 412

[Close]

BLAST of MS003565 vs. TAIR 10
Match: AT1G71440.1 (tubulin folding cofactor E / Pfifferling (PFI) )

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-43
Identity = 92/158 (58.23%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 3   SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRL 62
           S     SS   Q FN LRLLNL++N I++W+E+LKL QL  LEQ+ LN NKLSRIF    
Sbjct: 247 STITSTSSSDDQAFNSLRLLNLDDNCISDWSEVLKLSQLPCLEQLYLNKNKLSRIF---- 306

Query: 63  YELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDIRLSENLIADP 122
                + G   S   + PF +L CLLLG NNI D AS+D LN FPQL+DIRLSEN I+DP
Sbjct: 307 ---QSVNGTESSEKGSDPFPSLSCLLLGANNIGDLASVDALNGFPQLVDIRLSENPISDP 366

Query: 123 GRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY 161
            RGG+PR+VL+ARL+KVQ++NGSE V  RE++DSEIRY
Sbjct: 367 VRGGVPRFVLVARLTKVQVLNGSE-VRAREKKDSEIRY 396

The following BLAST results are available for this feature:

BLAST of MS003565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152477.1	4.8e-79	96.84	tubulin-folding cofactor E [Momordica charantia] >XP_022152478.1 tubulin-folding...	[more]
XP_008445988.1	5.7e-64	84.18	PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo] >XP_008445989.1 ...	[more]
XP_008445986.1	5.7e-64	84.18	PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo]	[more]
XP_008445987.1	5.7e-64	84.18	PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis melo]	[more]
XP_011660193.1	2.2e-63	82.28	tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_031736058.1 tubulin-...	[more]

BLAST of MS003565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GRL7	2.2e-42	58.23	Tubulin-folding cofactor E OS=Arabidopsis thaliana OX=3702 GN=TFCE PE=2 SV=1	[more]
Q8C5W3	2.4e-12	35.19	Tubulin-specific chaperone cofactor E-like protein OS=Mus musculus OX=10090 GN=T...	[more]
Q5PQJ7	2.4e-12	35.19	Tubulin-specific chaperone cofactor E-like protein OS=Rattus norvegicus OX=10116...	[more]
Q5QJ74	3.1e-12	35.19	Tubulin-specific chaperone cofactor E-like protein OS=Homo sapiens OX=9606 GN=TB...	[more]
Q5U508	3.0e-07	26.17	Tubulin-specific chaperone E OS=Xenopus laevis OX=8355 GN=tbce PE=2 SV=1	[more]

BLAST of MS003565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DEY9	2.3e-79	96.84	Tubulin-folding cofactor E OS=Momordica charantia OX=3673 GN=LOC111020198 PE=3 S...	[more]
A0A1S3BEU4	2.8e-64	84.18	Tubulin-folding cofactor E OS=Cucumis melo OX=3656 GN=LOC103488852 PE=3 SV=1	[more]
A0A5A7SYG1	2.8e-64	84.18	Tubulin-folding cofactor E OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0LXN7	2.8e-64	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650070 PE=4 SV=1	[more]
A0A1S3BEN9	2.8e-64	84.18	Tubulin-folding cofactor E OS=Cucumis melo OX=3656 GN=LOC103488852 PE=3 SV=1	[more]

BLAST of MS003565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71440.1	1.6e-43	58.23	tubulin folding cofactor E / Pfifferling (PFI)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 5..67 e-value: 2.9E-6 score: 28.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 68..161 e-value: 1.7E-9 score: 39.1
None	No IPR available	PANTHER	PTHR15140:SF6	TUBULIN-SPECIFIC CHAPERONE E	coord: 11..160
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 13..122
IPR044994	Tubulin-specific chaperone E	PANTHER	PTHR15140	TUBULIN-SPECIFIC CHAPERONE E	coord: 11..160
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 83..104 score: 7.958377
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 18..39 score: 7.32692

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003565.1	MS003565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
molecular_function	GO:0043014	alpha-tubulin binding
molecular_function	GO:0005515	protein binding