MS003522 (gene) Bitter gourd (TR) v1

Overview


Name	MS003522
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold234: 3280489 .. 3280825 (+)
RNA-Seq Expression	MS003522
Synteny	MS003522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGAGCTTCACAGGAGGCGACTACAGATAAAATCAAGGTCAAAGATAAGAAAGAATACTAAAGGTCTTTCCGATTCATTATAATGTTGTGGTGTAGTTTCTTGTTGAAGGACTATGTTTTAAGTTTGAATTCTTTGTTGGTCTAATAGATACTCGTGGAAAATCTCAGATCAGACATCTGAATATCAGTGACAGAGGTAATGAAGCTGAACAGTCGAAACATTCCAATTCTGATGTTGATTTGGGTGAAAAGAGCTCACATGTTCAGCAAGACAAGACAAAAACTATGCTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATATTA

mRNA sequence

CAGGAGCTTCACAGGAGGCGACTACAGATAAAATCAAGGTCAAAGATAAGAAAGAATACTAAAGATACTCGTGGAAAATCTCAGATCAGACATCTGAATATCAGTGACAGAGGTAATGAAGCTGAACAGTCGAAACATTCCAATTCTGATGTTGATTTGGGTGAAAAGAGCTCACATGTTCAGCAAGACAAGACAAAAACTATGCTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATATTA

Coding sequence (CDS)

CAGGAGCTTCACAGGAGGCGACTACAGATAAAATCAAGGTCAAAGATAAGAAAGAATACTAAAGATACTCGTGGAAAATCTCAGATCAGACATCTGAATATCAGTGACAGAGGTAATGAAGCTGAACAGTCGAAACATTCCAATTCTGATGTTGATTTGGGTGAAAAGAGCTCACATGTTCAGCAAGACAAGACAAAAACTATGCTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATATTA

Protein sequence

QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHVQQDKTKTMLPSKKLHKLHWGYEIL

Homology

[Close]

BLAST of MS003522 vs. NCBI nr
Match: XP_022133579.1 (uncharacterized protein LOC111006121 isoform X1 [Momordica charantia] >XP_022133580.1 uncharacterized protein LOC111006121 isoform X1 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKS+HV
Sbjct: 39  QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSTHV 98

Query: 61  QQDKTKTMLPSKKLHKLHWGYE 83
           QQDKTKTMLPSKKLHKLHWG +
Sbjct: 99  QQDKTKTMLPSKKLHKLHWGLD 120

[Close]

BLAST of MS003522 vs. NCBI nr
Match: XP_022133581.1 (uncharacterized protein LOC111006121 isoform X2 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 2  ELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHVQ 61
          ELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKS+HVQ
Sbjct: 18 ELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSTHVQ 77

Query: 62 QDKTKTMLPSKKLHKLHWGYE 83
          QDKTKTMLPSKKLHKLHWG +
Sbjct: 78 QDKTKTMLPSKKLHKLHWGLD 98

[Close]

BLAST of MS003522 vs. NCBI nr
Match: XP_038884370.1 (uncharacterized protein LOC120075231 isoform X1 [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 6.7e-24
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTK-DTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSH 60
           QEL RRRLQIKSRSK RKNTK D  GKSQI+HLN +D  NEA+ S+ SNS+VD GEKSSH
Sbjct: 38  QELQRRRLQIKSRSKKRKNTKVDATGKSQIKHLNTNDEVNEADYSRLSNSEVDFGEKSSH 97

Query: 61  VQQDKTKTMLPSKKLHKLHWGYEIL 85
           VQQDKTKT  PSKKLHKLHWGYEIL
Sbjct: 98  VQQDKTKTTFPSKKLHKLHWGYEIL 122

[Close]

BLAST of MS003522 vs. NCBI nr
Match: XP_004138636.1 (uncharacterized protein LOC101215509 isoform X3 [Cucumis sativus] >KGN63130.1 hypothetical protein Csa_022140 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 9.7e-23
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QEL RRRLQIKSRSKIRKNTKD  GKSQ+ HLN S+  NEAE S+ SNSDVD GEKSS V
Sbjct: 38  QELQRRRLQIKSRSKIRKNTKDATGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLV 97

Query: 61  QQDKTKTMLPSKKLHKLHWGYE 83
           Q DKTKT LPSKKLHKLHWG +
Sbjct: 98  QHDKTKTTLPSKKLHKLHWGLD 119

[Close]

BLAST of MS003522 vs. NCBI nr
Match: TYK06677.1 (uncharacterized protein E5676_scaffold453G001700 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 65/83 (78.31%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QEL RRRLQIKSRSKIRKNTKD  GKSQI+HLN S+  NEAE S+ SNSDVD GEKSS V
Sbjct: 38  QELQRRRLQIKSRSKIRKNTKDATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLV 97

Query: 61  QQDKTKTMLPSKKLHKLHWGYEI 84
           Q DKTKT L SKKLHKLHWG E+
Sbjct: 98  QDDKTKTTLSSKKLHKLHWGPEL 120

[Close]

BLAST of MS003522 vs. ExPASy TrEMBL
Match: A0A6J1BWD6 (uncharacterized protein LOC111006121 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006121 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKS+HV
Sbjct: 39  QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSTHV 98

Query: 61  QQDKTKTMLPSKKLHKLHWGYE 83
           QQDKTKTMLPSKKLHKLHWG +
Sbjct: 99  QQDKTKTMLPSKKLHKLHWGLD 120

[Close]

BLAST of MS003522 vs. ExPASy TrEMBL
Match: A0A6J1BVI4 (uncharacterized protein LOC111006121 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006121 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 2  ELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHVQ 61
          ELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKS+HVQ
Sbjct: 18 ELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSTHVQ 77

Query: 62 QDKTKTMLPSKKLHKLHWGYE 83
          QDKTKTMLPSKKLHKLHWG +
Sbjct: 78 QDKTKTMLPSKKLHKLHWGLD 98

[Close]

BLAST of MS003522 vs. ExPASy TrEMBL
Match: A0A0A0LMI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404820 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.7e-23
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QEL RRRLQIKSRSKIRKNTKD  GKSQ+ HLN S+  NEAE S+ SNSDVD GEKSS V
Sbjct: 38  QELQRRRLQIKSRSKIRKNTKDATGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLV 97

Query: 61  QQDKTKTMLPSKKLHKLHWGYE 83
           Q DKTKT LPSKKLHKLHWG +
Sbjct: 98  QHDKTKTTLPSKKLHKLHWGLD 119

[Close]

BLAST of MS003522 vs. ExPASy TrEMBL
Match: A0A5D3C4A2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001700 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.1e-23
Identity = 65/83 (78.31%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QEL RRRLQIKSRSKIRKNTKD  GKSQI+HLN S+  NEAE S+ SNSDVD GEKSS V
Sbjct: 38  QELQRRRLQIKSRSKIRKNTKDATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLV 97

Query: 61  QQDKTKTMLPSKKLHKLHWGYEI 84
           Q DKTKT L SKKLHKLHWG E+
Sbjct: 98  QDDKTKTTLSSKKLHKLHWGPEL 120

[Close]

BLAST of MS003522 vs. ExPASy TrEMBL
Match: A0A1S3B3S6 (uncharacterized protein LOC103485441 OS=Cucumis melo OX=3656 GN=LOC103485441 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1   QELHRRRLQIKSRSKIRKNTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSSHV 60
           QEL RRRLQIKSRSKIRKNTKD  GKSQI+HLN S+  NEAE S+ SNSDVD GEKSS V
Sbjct: 38  QELQRRRLQIKSRSKIRKNTKDATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLV 97

Query: 61  QQDKTKTMLPSKKLHKLHWGYE 83
           Q DKTKT L SKKLHKLHWG +
Sbjct: 98  QDDKTKTTLSSKKLHKLHWGLD 119

The following BLAST results are available for this feature:

BLAST of MS003522 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133579.1	2.1e-33	96.34	uncharacterized protein LOC111006121 isoform X1 [Momordica charantia] >XP_022133...	[more]
XP_022133581.1	6.0e-33	96.30	uncharacterized protein LOC111006121 isoform X2 [Momordica charantia]	[more]
XP_038884370.1	6.7e-24	78.82	uncharacterized protein LOC120075231 isoform X1 [Benincasa hispida]	[more]
XP_004138636.1	9.7e-23	78.05	uncharacterized protein LOC101215509 isoform X3 [Cucumis sativus] >KGN63130.1 hy...	[more]
TYK06677.1	1.3e-22	78.31	uncharacterized protein E5676_scaffold453G001700 [Cucumis melo var. makuwa]	[more]

BLAST of MS003522 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWD6	1.0e-33	96.34	uncharacterized protein LOC111006121 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BVI4	2.9e-33	96.30	uncharacterized protein LOC111006121 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LMI7	4.7e-23	78.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404820 PE=4 SV=1	[more]
A0A5D3C4A2	6.1e-23	78.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B3S6	1.4e-22	78.05	uncharacterized protein LOC103485441 OS=Cucumis melo OX=3656 GN=LOC103485441 PE=...	[more]

BLAST of MS003522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003522.1	MS003522.1	mRNA