MS003430 (gene) Bitter gourd (TR) v1

Overview


Name	MS003430
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	immediate early response 3-interacting protein 1-like
Location	scaffold234: 2810496 .. 2810726 (-)
RNA-Seq Expression	MS003430
Synteny	MS003430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGTGGACGCTATTAGAGGGTTGTCTGCTTCTTGCGAATGCACTAGCAATACTAAATGAAGATCGTTTTCTTGCTCCTCGTGGATTGAGCTTCTCCGAGTTCTCAGGAGGTAGAACAAAGTCATTCAAGGGGCAGCTTATAGGCCTTATCTACGCAACACAATATTTGAGGGTTCCTCTCATAATGCTCAATGCAATCTGTATCTTTGTAAAGTTGGTATCCGGA

mRNA sequence

ATGGGTTTGTGGACGCTATTAGAGGGTTGTCTGCTTCTTGCGAATGCACTAGCAATACTAAATGAAGATCGTTTTCTTGCTCCTCGTGGATTGAGCTTCTCCGAGTTCTCAGGAGGTAGAACAAAGTCATTCAAGGGGCAGCTTATAGGCCTTATCTACGCAACACAATATTTGAGGGTTCCTCTCATAATGCTCAATGCAATCTGTATCTTTGTAAAGTTGGTATCCGGA

Coding sequence (CDS)

ATGGGTTTGTGGACGCTATTAGAGGGTTGTCTGCTTCTTGCGAATGCACTAGCAATACTAAATGAAGATCGTTTTCTTGCTCCTCGTGGATTGAGCTTCTCCGAGTTCTCAGGAGGTAGAACAAAGTCATTCAAGGGGCAGCTTATAGGCCTTATCTACGCAACACAATATTTGAGGGTTCCTCTCATAATGCTCAATGCAATCTGTATCTTTGTAAAGTTGGTATCCGGA

Protein sequence

MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRVPLIMLNAICIFVKLVSG

Homology

[Close]

BLAST of MS003430 vs. NCBI nr
Match: XP_022134292.1 (immediate early response 3-interacting protein 1-like [Momordica charantia] >XP_022134293.1 immediate early response 3-interacting protein 1-like [Momordica charantia] >XP_038892190.1 immediate early response 3-interacting protein 1-like [Benincasa hispida] >XP_038892191.1 immediate early response 3-interacting protein 1-like [Benincasa hispida] >XP_038892192.1 immediate early response 3-interacting protein 1-like [Benincasa hispida] >XP_038892193.1 immediate early response 3-interacting protein 1-like [Benincasa hispida] >XP_038892194.1 immediate early response 3-interacting protein 1-like [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNAICIFVKLVSG
Sbjct: 61 PLIMLNAICIFVKLVSG 77

[Close]

BLAST of MS003430 vs. NCBI nr
Match: XP_031743934.1 (immediate early response 3-interacting protein 1 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGL+FSEFSGGRTKSFKGQLIGLIYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLNFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNAICIFVKLVSG
Sbjct: 61 PLIMLNAICIFVKLVSG 77

[Close]

BLAST of MS003430 vs. NCBI nr
Match: XP_008441413.1 (PREDICTED: immediate early response 3-interacting protein 1-like [Cucumis melo] >XP_008441414.1 PREDICTED: immediate early response 3-interacting protein 1-like [Cucumis melo] >XP_008441415.1 PREDICTED: immediate early response 3-interacting protein 1-like [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGL+FSEFSGGRTKSFKGQLIGLIYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLNFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNAICIFVKL+SG
Sbjct: 61 PLIMLNAICIFVKLISG 77

[Close]

BLAST of MS003430 vs. NCBI nr
Match: XP_022952849.1 (immediate early response 3-interacting protein 1-like [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLA RGLSFSEFSGGRTKSFKGQLIGL+YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLARRGLSFSEFSGGRTKSFKGQLIGLVYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNA+CIFVKLVSG
Sbjct: 61 PLIMLNALCIFVKLVSG 77

[Close]

BLAST of MS003430 vs. NCBI nr
Match: XP_022990010.1 (immediate early response 3-interacting protein 1-like [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 5.2e-31
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLA RGLSFSEFSGGRTKS KGQLIGL+YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLARRGLSFSEFSGGRTKSLKGQLIGLVYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNA+CIFVKLVSG
Sbjct: 61 PLIMLNALCIFVKLVSG 77

[Close]

BLAST of MS003430 vs. ExPASy Swiss-Prot
Match: Q3B8G7 (Immediate early response 3-interacting protein 1 OS=Xenopus laevis OX=8355 GN=ier3ip1 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-05
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSG--GRTKSFKGQLIGLIYATQ-YLR 62
          L+TLL+  LL  NA+A+L+E+RFL+  G       G  G     K QL+ LI + +  +R
Sbjct: 5  LYTLLQAALLCVNAVAVLHEERFLSKIGWGVDHGIGGFGEEPGMKSQLMNLIRSVRTVMR 64

Query: 63 VPLIMLNAICIFVKLVSG 78
          VPLI++N++ I + L+ G
Sbjct: 65 VPLIIVNSVTIVLLLLFG 82

[Close]

BLAST of MS003430 vs. ExPASy Swiss-Prot
Match: Q4VBI2 (Immediate early response 3-interacting protein 1 OS=Danio rerio OX=7955 GN=ier3ip1 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-05
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSG--GRTKSFKGQLIGLIYATQ-YLR 62
          L+ L++  +L  NA+A+L+E+RFL+  G    +  G  G     K QL+ LI + +  +R
Sbjct: 5  LYALIQTAILFTNAIAVLHEERFLSKIGWGAEQGVGGFGDDPGIKAQLLNLIRSVRTVMR 64

Query: 63 VPLIMLNAICIFVKLVSG 78
          VPLI +N++CI + L+ G
Sbjct: 65 VPLIAVNSVCIVLLLLFG 82

[Close]

BLAST of MS003430 vs. ExPASy Swiss-Prot
Match: Q1JQC2 (Immediate early response 3-interacting protein 1 OS=Bos taurus OX=9913 GN=IER3IP1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.6e-05
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSG--GRTKSFKGQLIGLIYATQ-YLR 62
          L++LL+  LL  NA+A+L+E+RFL   G    +  G  G     K QL+ LI + +  +R
Sbjct: 5  LYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64

Query: 63 VPLIMLNAICIFVKLVSG 78
          VPLI++N+I I + L+ G
Sbjct: 65 VPLIIVNSIAIVLLLLFG 82

[Close]

BLAST of MS003430 vs. ExPASy Swiss-Prot
Match: Q9Y5U9 (Immediate early response 3-interacting protein 1 OS=Homo sapiens OX=9606 GN=IER3IP1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.6e-05
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSG--GRTKSFKGQLIGLIYATQ-YLR 62
          L++LL+  LL  NA+A+L+E+RFL   G    +  G  G     K QL+ LI + +  +R
Sbjct: 5  LYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64

Query: 63 VPLIMLNAICIFVKLVSG 78
          VPLI++N+I I + L+ G
Sbjct: 65 VPLIIVNSIAIVLLLLFG 82

[Close]

BLAST of MS003430 vs. ExPASy Swiss-Prot
Match: P85007 (Immediate early response 3-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Ier3ip1 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSG--GRTKSFKGQLIGLIYATQ-YLR 62
          L++L++  LL  NA+A+L+E+RFL   G    +  G  G     K QL+ LI + +  +R
Sbjct: 5  LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLLNLIRSVRTVMR 64

Query: 63 VPLIMLNAICIFVKLVSG 78
          VPLI++N+I I + L+ G
Sbjct: 65 VPLIIVNSITIVLLLLFG 82

[Close]

BLAST of MS003430 vs. ExPASy TrEMBL
Match: A0A6J1C1M0 (immediate early response 3-interacting protein 1-like OS=Momordica charantia OX=3673 GN=LOC111006591 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNAICIFVKLVSG
Sbjct: 61 PLIMLNAICIFVKLVSG 77

[Close]

BLAST of MS003430 vs. ExPASy TrEMBL
Match: A0A0A0KBI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009360 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGL+FSEFSGGRTKSFKGQLIGLIYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLNFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNAICIFVKLVSG
Sbjct: 61 PLIMLNAICIFVKLVSG 77

[Close]

BLAST of MS003430 vs. ExPASy TrEMBL
Match: A0A1S3B419 (immediate early response 3-interacting protein 1-like OS=Cucumis melo OX=3656 GN=LOC103485539 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGL+FSEFSGGRTKSFKGQLIGLIYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLNFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNAICIFVKL+SG
Sbjct: 61 PLIMLNAICIFVKLISG 77

[Close]

BLAST of MS003430 vs. ExPASy TrEMBL
Match: A0A6J1GMX2 (immediate early response 3-interacting protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111455413 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-32
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLA RGLSFSEFSGGRTKSFKGQLIGL+YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLARRGLSFSEFSGGRTKSFKGQLIGLVYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNA+CIFVKLVSG
Sbjct: 61 PLIMLNALCIFVKLVSG 77

[Close]

BLAST of MS003430 vs. ExPASy TrEMBL
Match: A0A6J1JNY1 (immediate early response 3-interacting protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111487030 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLA RGLSFSEFSGGRTKS KGQLIGL+YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLARRGLSFSEFSGGRTKSLKGQLIGLVYATQYLRV 60

Query: 61 PLIMLNAICIFVKLVSG 78
          PLIMLNA+CIFVKLVSG
Sbjct: 61 PLIMLNALCIFVKLVSG 77

[Close]

BLAST of MS003430 vs. TAIR 10
Match: AT2G37975.1 (Yos1-like protein )

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-19
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEF-SGGRTKSFKGQLIGLIYATQYLR 60
          MG WTL+EG LL ANALAILNEDRFLAP+G + +E    G+  S KGQ+IGLI+A  Y+R
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query: 61 VPLIMLNAICIFVKLVSG 78
          +PL++ N I I  KL SG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

[Close]

BLAST of MS003430 vs. TAIR 10
Match: AT3G54085.1 (Yos1-like protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEF-SGGRTKSFKGQLIGLIYATQYLR 60
          MG WTLL+G LL ANALAILNEDRFL PRG +  E     R  S KGQ+IGLI+A QY+R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 VPLIMLNAICIFVKLVSG 78
          +PL+++N   I +KL+SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

[Close]

BLAST of MS003430 vs. TAIR 10
Match: AT3G54085.2 (Yos1-like protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGLSFSEF-SGGRTKSFKGQLIGLIYATQYLR 60
          MG WTLL+G LL ANALAILNEDRFL PRG +  E     R  S KGQ+IGLI+A QY+R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 VPLIMLNAICIFVKLVSG 78
          +PL+++N   I +KL+SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

The following BLAST results are available for this feature:

BLAST of MS003430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134292.1	4.2e-33	100.00	immediate early response 3-interacting protein 1-like [Momordica charantia] >XP_...	[more]
XP_031743934.1	9.4e-33	98.70	immediate early response 3-interacting protein 1 [Cucumis sativus]	[more]
XP_008441413.1	1.2e-32	97.40	PREDICTED: immediate early response 3-interacting protein 1-like [Cucumis melo] ...	[more]
XP_022952849.1	1.0e-31	96.10	immediate early response 3-interacting protein 1-like [Cucurbita moschata]	[more]
XP_022990010.1	5.2e-31	94.81	immediate early response 3-interacting protein 1-like [Cucurbita maxima]	[more]

BLAST of MS003430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3B8G7	3.0e-05	39.74	Immediate early response 3-interacting protein 1 OS=Xenopus laevis OX=8355 GN=ie...	[more]
Q4VBI2	3.9e-05	37.18	Immediate early response 3-interacting protein 1 OS=Danio rerio OX=7955 GN=ier3i...	[more]
Q1JQC2	6.6e-05	39.74	Immediate early response 3-interacting protein 1 OS=Bos taurus OX=9913 GN=IER3IP...	[more]
Q9Y5U9	6.6e-05	39.74	Immediate early response 3-interacting protein 1 OS=Homo sapiens OX=9606 GN=IER3...	[more]
P85007	1.1e-04	38.46	Immediate early response 3-interacting protein 1 OS=Rattus norvegicus OX=10116 G...	[more]

BLAST of MS003430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1M0	2.1e-33	100.00	immediate early response 3-interacting protein 1-like OS=Momordica charantia OX=...	[more]
A0A0A0KBI3	4.6e-33	98.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009360 PE=3 SV=1	[more]
A0A1S3B419	6.0e-33	97.40	immediate early response 3-interacting protein 1-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1GMX2	5.1e-32	96.10	immediate early response 3-interacting protein 1-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1JNY1	2.5e-31	94.81	immediate early response 3-interacting protein 1-like OS=Cucurbita maxima OX=366...	[more]

BLAST of MS003430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37975.1	4.9e-19	60.26	Yos1-like protein	[more]
AT3G54085.1	1.1e-18	60.26	Yos1-like protein	[more]
AT3G54085.2	1.1e-18	60.26	Yos1-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013880	Yos1-like	PFAM	PF08571	Yos1	coord: 3..77 e-value: 2.6E-23 score: 82.1
IPR013880	Yos1-like	PANTHER	PTHR15858	UNCHARACTERIZED	coord: 1..77
None	No IPR available	PANTHER	PTHR15858:SF4	YOS1-LIKE PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003430.1	MS003430.1	mRNA