MS003425 (gene) Bitter gourd (TR) v1

Overview
NameMS003425
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProline transporter 1
Locationscaffold234: 2784138 .. 2784428 (-)
RNA-Seq ExpressionMS003425
SyntenyMS003425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCAACAGATTTAACATTGGGTTTCTTTTCCTTCTCAACCTTGGGGACGGTAACAGTGAGAACGCCATTTTCCATCGCGGCCTTGACTTCGTCCACCATGGCATTCTCCGGCAGCCGGAACATTCTGGAGAACTGGCCGCTGCTTCTCTCGACGCGGTGCCAGGAGTCTCCTTTCTCCTCGGCCTCCTTGCTCCTCTGGCCGCTGATCCTGAGCACCCTCCCGTCTTCCACTTCCACCTTCACTTCTTCCTTCTTCAGCCCCGGCACGTCGGCCTTGAAAACGTGGGCG

mRNA sequence

ATTTCAACAGATTTAACATTGGGTTTCTTTTCCTTCTCAACCTTGGGGACGGTAACAGTGAGAACGCCATTTTCCATCGCGGCCTTGACTTCGTCCACCATGGCATTCTCCGGCAGCCGGAACATTCTGGAGAACTGGCCGCTGCTTCTCTCGACGCGGTGCCAGGAGTCTCCTTTCTCCTCGGCCTCCTTGCTCCTCTGGCCGCTGATCCTGAGCACCCTCCCGTCTTCCACTTCCACCTTCACTTCTTCCTTCTTCAGCCCCGGCACGTCGGCCTTGAAAACGTGGGCG

Coding sequence (CDS)

ATTTCAACAGATTTAACATTGGGTTTCTTTTCCTTCTCAACCTTGGGGACGGTAACAGTGAGAACGCCATTTTCCATCGCGGCCTTGACTTCGTCCACCATGGCATTCTCCGGCAGCCGGAACATTCTGGAGAACTGGCCGCTGCTTCTCTCGACGCGGTGCCAGGAGTCTCCTTTCTCCTCGGCCTCCTTGCTCCTCTGGCCGCTGATCCTGAGCACCCTCCCGTCTTCCACTTCCACCTTCACTTCTTCCTTCTTCAGCCCCGGCACGTCGGCCTTGAAAACGTGGGCG

Protein sequence

ISTDLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSASLLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA
Homology
BLAST of MS003425 vs. NCBI nr
Match: RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 70/97 (72.16%), Postives = 75/97 (77.32%), Query Frame = 0

Query: 1   ISTDLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFS 60
           +S  L  GF + S LGTVTV TPFSIAA TSST+AFSG+ N L N PLLLSTRC  S FS
Sbjct: 41  MSMALMSGFLTCS-LGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFS 100

Query: 61  SASLLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
           S SLLL PLI  TLPSS+STFTSSFF PG SALKTWA
Sbjct: 101 SFSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWA 136

BLAST of MS003425 vs. NCBI nr
Match: RWR97330.1 (Proline transporter 1 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 69/97 (71.13%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 1   ISTDLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFS 60
           +S  LT G  + S LGTV V TPFSIAA TSST+AFSG+ N L N PLLLSTRCQ S FS
Sbjct: 21  MSMVLTSGSLTCS-LGTVIVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCQLSFFS 80

Query: 61  SASLLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
           S S LL PLI  TLPSS+STFTSSFF PG SALKTWA
Sbjct: 81  SFSRLLSPLICRTLPSSSSTFTSSFFRPGRSALKTWA 116

BLAST of MS003425 vs. NCBI nr
Match: VFQ82571.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 66/93 (70.97%), Postives = 69/93 (74.19%), Query Frame = 0

Query: 4  DLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSAS 63
          DLT GFF+ S+LGTVTV TPFS+ A T S  AFSGSRN   N PLL S RC  S FSS S
Sbjct: 2  DLTSGFFT-SSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 61

Query: 64 LLLWPLILSTLPSSTSTFTSSFFSPGTSALKTW 97
          LLL PLI   LPSSTSTFTSSFFSPG SAL TW
Sbjct: 62 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTW 93

BLAST of MS003425 vs. NCBI nr
Match: ACN29022.1 (unknown [Zea mays] >ACR36591.1 unknown [Zea mays])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 5  LTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSASL 64
          LT GF + S LGTVTV TPFS AALTSS +AFSG R    NWPLL STRC  SP SS SL
Sbjct: 3  LTSGFLT-SALGTVTVSTPFSSAALTSSVLAFSGRRKRRTNWPLLRSTRCHLSPLSSFSL 62

Query: 65 LLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
          L  PL+ STLPSSTSTFTSSFF+PG SAL T A
Sbjct: 63 LRCPLMSSTLPSSTSTFTSSFFTPGRSALNTCA 94

BLAST of MS003425 vs. NCBI nr
Match: KVI09872.1 (hypothetical protein Ccrd_011724 [Cynara cardunculus var. scolymus])

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 67/94 (71.28%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 4   DLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSAS 63
           D T GFF  ST GTVTV TPFSI A TSST A SGS N+  N+PLLLSTRC  SP SS S
Sbjct: 46  DFTSGFF-ISTFGTVTVSTPFSIDAFTSSTFALSGSLNLRINFPLLLSTRCHVSPLSSLS 105

Query: 64  LLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
           L L PLI ST  SS STFTSSFFSPGTSAL T A
Sbjct: 106 LFLSPLIWSTRSSSISTFTSSFFSPGTSALNTCA 138

BLAST of MS003425 vs. ExPASy TrEMBL
Match: A0A443Q2S3 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02676000 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.0e-22
Identity = 70/97 (72.16%), Postives = 75/97 (77.32%), Query Frame = 0

Query: 1   ISTDLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFS 60
           +S  L  GF + S LGTVTV TPFSIAA TSST+AFSG+ N L N PLLLSTRC  S FS
Sbjct: 41  MSMALMSGFLTCS-LGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFS 100

Query: 61  SASLLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
           S SLLL PLI  TLPSS+STFTSSFF PG SALKTWA
Sbjct: 101 SFSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWA 136

BLAST of MS003425 vs. ExPASy TrEMBL
Match: A0A443Q2U6 (Proline transporter 1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02675800 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.6e-21
Identity = 69/97 (71.13%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 1   ISTDLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFS 60
           +S  LT G  + S LGTV V TPFSIAA TSST+AFSG+ N L N PLLLSTRCQ S FS
Sbjct: 21  MSMVLTSGSLTCS-LGTVIVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCQLSFFS 80

Query: 61  SASLLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
           S S LL PLI  TLPSS+STFTSSFF PG SALKTWA
Sbjct: 81  SFSRLLSPLICRTLPSSSSTFTSSFFRPGRSALKTWA 116

BLAST of MS003425 vs. ExPASy TrEMBL
Match: A0A453IF59 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 66/94 (70.21%), Postives = 71/94 (75.53%), Query Frame = 0

Query: 4  DLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSAS 63
          DLT GF + S+LGTVTV TPFS+ A T S +AFSGSRN+  N PLL STRCQ S FSS S
Sbjct: 2  DLTSGFLA-SSLGTVTVSTPFSMDAFTCSALAFSGSRNLRRNLPLLRSTRCQVSVFSSCS 61

Query: 64 LLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
          L   PLI   LPSSTSTFTSSFFSPGTSAL T A
Sbjct: 62 LFRSPLIWRMLPSSTSTFTSSFFSPGTSALNTCA 94

BLAST of MS003425 vs. ExPASy TrEMBL
Match: T1MGU4 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 66/94 (70.21%), Postives = 71/94 (75.53%), Query Frame = 0

Query: 4  DLTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSAS 63
          DLT GF + S+LGTVTV TPFS+ A T S +AFSGSRN+  N PLL STRCQ S FSS S
Sbjct: 2  DLTSGFLA-SSLGTVTVSTPFSMDAFTCSALAFSGSRNLRRNLPLLRSTRCQVSVFSSCS 61

Query: 64 LLLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
          L   PLI   LPSSTSTFTSSFFSPGTSAL T A
Sbjct: 62 LFRSPLIWRMLPSSTSTFTSSFFSPGTSALNTCA 94

BLAST of MS003425 vs. ExPASy TrEMBL
Match: C0P7Q6 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 5  LTLGFFSFSTLGTVTVRTPFSIAALTSSTMAFSGSRNILENWPLLLSTRCQESPFSSASL 64
          LT GF + S LGTVTV TPFS AALTSS +AFSG R    NWPLL STRC  SP SS SL
Sbjct: 3  LTSGFLT-SALGTVTVSTPFSSAALTSSVLAFSGRRKRRTNWPLLRSTRCHLSPLSSFSL 62

Query: 65 LLWPLILSTLPSSTSTFTSSFFSPGTSALKTWA 98
          L  PL+ STLPSSTSTFTSSFF+PG SAL T A
Sbjct: 63 LRCPLMSSTLPSSTSTFTSSFFTPGRSALNTCA 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RWR97332.11.2e-2172.16hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae][more]
RWR97330.11.8e-2071.13Proline transporter 1 [Cinnamomum micranthum f. kanehirae][more]
VFQ82571.14.0e-2070.97unnamed protein product [Cuscuta campestris][more]
ACN29022.14.0e-2070.97unknown [Zea mays] >ACR36591.1 unknown [Zea mays][more]
KVI09872.15.2e-2071.28hypothetical protein Ccrd_011724 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A443Q2S36.0e-2272.16Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_... [more]
A0A443Q2U68.6e-2171.13Proline transporter 1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02... [more]
A0A453IF591.5e-2070.21Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
T1MGU41.5e-2070.21Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
C0P7Q61.9e-2070.97Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003425.1MS003425.1mRNA