MS003420 (gene) Bitter gourd (TR) v1

Overview
NameMS003420
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionimmediate early response 3-interacting protein 1-like
Locationscaffold234: 2756428 .. 2756658 (+)
RNA-Seq ExpressionMS003420
SyntenyMS003420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTGTGGACACTGCTAGAGGGCTGTCTGCTACTTGCCAATGCTCTAGCGATTCTAAACGAAGATCGTTTTCTCGCTCCTCGAGGGTGGAGCTTCTCAGACTTCTCAGGAGGAAGAACAAAGTCATTCAAAGGGCAGCTTATAGGGCTCACCTATGCAACGCAATACTTGAGAGTTCCTCTCATAATGCTCAATTCCATCTGCATCTTTTTGAAATTGGTATCGGGA

mRNA sequence

ATGGGCTTGTGGACACTGCTAGAGGGCTGTCTGCTACTTGCCAATGCTCTAGCGATTCTAAACGAAGATCGTTTTCTCGCTCCTCGAGGGTGGAGCTTCTCAGACTTCTCAGGAGGAAGAACAAAGTCATTCAAAGGGCAGCTTATAGGGCTCACCTATGCAACGCAATACTTGAGAGTTCCTCTCATAATGCTCAATTCCATCTGCATCTTTTTGAAATTGGTATCGGGA

Coding sequence (CDS)

ATGGGCTTGTGGACACTGCTAGAGGGCTGTCTGCTACTTGCCAATGCTCTAGCGATTCTAAACGAAGATCGTTTTCTCGCTCCTCGAGGGTGGAGCTTCTCAGACTTCTCAGGAGGAAGAACAAAGTCATTCAAAGGGCAGCTTATAGGGCTCACCTATGCAACGCAATACTTGAGAGTTCCTCTCATAATGCTCAATTCCATCTGCATCTTTTTGAAATTGGTATCGGGA

Protein sequence

MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRVPLIMLNSICIFLKLVSG
Homology
BLAST of MS003420 vs. NCBI nr
Match: XP_022133684.1 (immediate early response 3-interacting protein 1-like [Momordica charantia] >XP_022133685.1 immediate early response 3-interacting protein 1-like [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PLIMLNSICIFLKLVSG
Sbjct: 61 PLIMLNSICIFLKLVSG 77

BLAST of MS003420 vs. NCBI nr
Match: XP_022961355.1 (immediate early response 3-interacting protein 1-like [Cucurbita moschata] >XP_022990750.1 immediate early response 3-interacting protein 1-like [Cucurbita maxima] >XP_023553530.1 immediate early response 3-interacting protein 1-like [Cucurbita pepo subsp. pepo] >XP_023553538.1 immediate early response 3-interacting protein 1-like [Cucurbita pepo subsp. pepo] >KAG7033318.1 Immediate early response 3-interacting protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSF+GQLIGL YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFRGQLIGLIYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PL+MLN ICIF+KLVSG
Sbjct: 61 PLMMLNVICIFVKLVSG 77

BLAST of MS003420 vs. NCBI nr
Match: XP_002280168.3 (PREDICTED: immediate early response 3-interacting protein 1 [Vitis vinifera] >XP_010658490.1 PREDICTED: immediate early response 3-interacting protein 1 [Vitis vinifera] >XP_010658491.1 PREDICTED: immediate early response 3-interacting protein 1 [Vitis vinifera])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLL+ANALAILNEDRFLAPRGWSFS+FSGGRTKSFKGQLIGL YATQYLRV
Sbjct: 1  MGLWTLLEGCLLIANALAILNEDRFLAPRGWSFSEFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PLI+LNSICI +KLVSG
Sbjct: 61 PLILLNSICIIIKLVSG 77

BLAST of MS003420 vs. NCBI nr
Match: CBI31551.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLL+ANALAILNEDRFLAPRGWSFS+FSGGRTKSFKGQLIGL YATQYLRV
Sbjct: 12 MGLWTLLEGCLLIANALAILNEDRFLAPRGWSFSEFSGGRTKSFKGQLIGLIYATQYLRV 71

Query: 61 PLIMLNSICIFLKLVSG 78
          PLI+LNSICI +KLVSG
Sbjct: 72 PLILLNSICIIIKLVSG 88

BLAST of MS003420 vs. NCBI nr
Match: XP_003552591.1 (immediate early response 3-interacting protein 1 [Glycine max] >XP_006601969.1 immediate early response 3-interacting protein 1 [Glycine max] >XP_028214379.1 immediate early response 3-interacting protein 1-like [Glycine soja] >XP_028214380.1 immediate early response 3-interacting protein 1-like [Glycine soja] >KAG4923329.1 hypothetical protein JHK87_048869 [Glycine soja] >KAG5090451.1 hypothetical protein JHK82_049229 [Glycine max] >KAG5093530.1 hypothetical protein JHK84_049118 [Glycine max] >KHN07633.1 Immediate early response 3-interacting protein 1 [Glycine soja] >KRG97792.1 hypothetical protein GLYMA_18G031200v4 [Glycine max])

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEG LLLANALAILNEDRFLAPRGW F DFSGGRTKSFKGQLIGL YATQYLRV
Sbjct: 1  MGLWTLLEGFLLLANALAILNEDRFLAPRGWGFQDFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PLI+LNSICIFLKLVSG
Sbjct: 61 PLILLNSICIFLKLVSG 77

BLAST of MS003420 vs. ExPASy Swiss-Prot
Match: Q3B8G7 (Immediate early response 3-interacting protein 1 OS=Xenopus laevis OX=8355 GN=ier3ip1 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-07
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSG--GRTKSFKGQLIGLTYATQ-YLR 62
          L+TLL+  LL  NA+A+L+E+RFL+  GW      G  G     K QL+ L  + +  +R
Sbjct: 5  LYTLLQAALLCVNAVAVLHEERFLSKIGWGVDHGIGGFGEEPGMKSQLMNLIRSVRTVMR 64

Query: 63 VPLIMLNSICIFLKLVSG 78
          VPLI++NS+ I L L+ G
Sbjct: 65 VPLIIVNSVTIVLLLLFG 82

BLAST of MS003420 vs. ExPASy Swiss-Prot
Match: Q4VBI2 (Immediate early response 3-interacting protein 1 OS=Danio rerio OX=7955 GN=ier3ip1 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSG--GRTKSFKGQLIGLTYATQ-YLR 62
          L+ L++  +L  NA+A+L+E+RFL+  GW      G  G     K QL+ L  + +  +R
Sbjct: 5  LYALIQTAILFTNAIAVLHEERFLSKIGWGAEQGVGGFGDDPGIKAQLLNLIRSVRTVMR 64

Query: 63 VPLIMLNSICIFLKLVSG 78
          VPLI +NS+CI L L+ G
Sbjct: 65 VPLIAVNSVCIVLLLLFG 82

BLAST of MS003420 vs. ExPASy Swiss-Prot
Match: Q1JQC2 (Immediate early response 3-interacting protein 1 OS=Bos taurus OX=9913 GN=IER3IP1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-07
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSG--GRTKSFKGQLIGLTYATQ-YLR 62
          L++LL+  LL  NA+A+L+E+RFL   GW      G  G     K QL+ L  + +  +R
Sbjct: 5  LYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64

Query: 63 VPLIMLNSICIFLKLVSG 78
          VPLI++NSI I L L+ G
Sbjct: 65 VPLIIVNSIAIVLLLLFG 82

BLAST of MS003420 vs. ExPASy Swiss-Prot
Match: Q9Y5U9 (Immediate early response 3-interacting protein 1 OS=Homo sapiens OX=9606 GN=IER3IP1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-07
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSG--GRTKSFKGQLIGLTYATQ-YLR 62
          L++LL+  LL  NA+A+L+E+RFL   GW      G  G     K QL+ L  + +  +R
Sbjct: 5  LYSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLMNLIRSVRTVMR 64

Query: 63 VPLIMLNSICIFLKLVSG 78
          VPLI++NSI I L L+ G
Sbjct: 65 VPLIIVNSIAIVLLLLFG 82

BLAST of MS003420 vs. ExPASy Swiss-Prot
Match: P85007 (Immediate early response 3-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Ier3ip1 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 3  LWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSG--GRTKSFKGQLIGLTYATQ-YLR 62
          L++L++  LL  NA+A+L+E+RFL   GW      G  G     K QL+ L  + +  +R
Sbjct: 5  LYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLLNLIRSVRTVMR 64

Query: 63 VPLIMLNSICIFLKLVSG 78
          VPLI++NSI I L L+ G
Sbjct: 65 VPLIIVNSITIVLLLLFG 82

BLAST of MS003420 vs. ExPASy TrEMBL
Match: A0A6J1BWQ3 (immediate early response 3-interacting protein 1-like OS=Momordica charantia OX=3673 GN=LOC111006208 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PLIMLNSICIFLKLVSG
Sbjct: 61 PLIMLNSICIFLKLVSG 77

BLAST of MS003420 vs. ExPASy TrEMBL
Match: A0A6J1JQY6 (immediate early response 3-interacting protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111487538 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSF+GQLIGL YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFRGQLIGLIYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PL+MLN ICIF+KLVSG
Sbjct: 61 PLMMLNVICIFVKLVSG 77

BLAST of MS003420 vs. ExPASy TrEMBL
Match: A0A6J1HBY6 (immediate early response 3-interacting protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111461905 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSF+GQLIGL YATQYLRV
Sbjct: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFRGQLIGLIYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PL+MLN ICIF+KLVSG
Sbjct: 61 PLMMLNVICIFVKLVSG 77

BLAST of MS003420 vs. ExPASy TrEMBL
Match: D7TMI4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g03230 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEGCLL+ANALAILNEDRFLAPRGWSFS+FSGGRTKSFKGQLIGL YATQYLRV
Sbjct: 12 MGLWTLLEGCLLIANALAILNEDRFLAPRGWSFSEFSGGRTKSFKGQLIGLIYATQYLRV 71

Query: 61 PLIMLNSICIFLKLVSG 78
          PLI+LNSICI +KLVSG
Sbjct: 72 PLILLNSICIIIKLVSG 88

BLAST of MS003420 vs. ExPASy TrEMBL
Match: A0A0R0EVK7 (Uncharacterized protein OS=Glycine max OX=3847 GN=100777404 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDFSGGRTKSFKGQLIGLTYATQYLRV 60
          MGLWTLLEG LLLANALAILNEDRFLAPRGW F DFSGGRTKSFKGQLIGL YATQYLRV
Sbjct: 1  MGLWTLLEGFLLLANALAILNEDRFLAPRGWGFQDFSGGRTKSFKGQLIGLIYATQYLRV 60

Query: 61 PLIMLNSICIFLKLVSG 78
          PLI+LNSICIFLKLVSG
Sbjct: 61 PLILLNSICIFLKLVSG 77

BLAST of MS003420 vs. TAIR 10
Match: AT3G54085.1 (Yos1-like protein )

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDF-SGGRTKSFKGQLIGLTYATQYLR 60
          MG WTLL+G LL ANALAILNEDRFL PRGW+  +     R  S KGQ+IGL +A QY+R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 VPLIMLNSICIFLKLVSG 78
          +PL+++N+  I LKL+SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

BLAST of MS003420 vs. TAIR 10
Match: AT3G54085.2 (Yos1-like protein )

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDF-SGGRTKSFKGQLIGLTYATQYLR 60
          MG WTLL+G LL ANALAILNEDRFL PRGW+  +     R  S KGQ+IGL +A QY+R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 VPLIMLNSICIFLKLVSG 78
          +PL+++N+  I LKL+SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

BLAST of MS003420 vs. TAIR 10
Match: AT2G37975.1 (Yos1-like protein )

HSP 1 Score: 94.4 bits (233), Expect = 4.4e-20
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MGLWTLLEGCLLLANALAILNEDRFLAPRGWSFSDF-SGGRTKSFKGQLIGLTYATQYLR 60
          MG WTL+EG LL ANALAILNEDRFLAP+GW+ ++    G+  S KGQ+IGL +A  Y+R
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query: 61 VPLIMLNSICIFLKLVSG 78
          +PL++ N I I  KL SG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022133684.11.3e-34100.00immediate early response 3-interacting protein 1-like [Momordica charantia] >XP_... [more]
XP_022961355.13.6e-3293.51immediate early response 3-interacting protein 1-like [Cucurbita moschata] >XP_0... [more]
XP_002280168.36.1e-3292.21PREDICTED: immediate early response 3-interacting protein 1 [Vitis vinifera] >XP... [more]
CBI31551.36.1e-3292.21unnamed protein product, partial [Vitis vinifera][more]
XP_003552591.12.3e-3193.51immediate early response 3-interacting protein 1 [Glycine max] >XP_006601969.1 i... [more]
Match NameE-valueIdentityDescription
Q3B8G73.2e-0742.31Immediate early response 3-interacting protein 1 OS=Xenopus laevis OX=8355 GN=ie... [more]
Q4VBI25.4e-0739.74Immediate early response 3-interacting protein 1 OS=Danio rerio OX=7955 GN=ier3i... [more]
Q1JQC29.2e-0742.31Immediate early response 3-interacting protein 1 OS=Bos taurus OX=9913 GN=IER3IP... [more]
Q9Y5U99.2e-0742.31Immediate early response 3-interacting protein 1 OS=Homo sapiens OX=9606 GN=IER3... [more]
P850071.6e-0641.03Immediate early response 3-interacting protein 1 OS=Rattus norvegicus OX=10116 G... [more]
Match NameE-valueIdentityDescription
A0A6J1BWQ36.4e-35100.00immediate early response 3-interacting protein 1-like OS=Momordica charantia OX=... [more]
A0A6J1JQY61.7e-3293.51immediate early response 3-interacting protein 1-like OS=Cucurbita maxima OX=366... [more]
A0A6J1HBY61.7e-3293.51immediate early response 3-interacting protein 1-like OS=Cucurbita moschata OX=3... [more]
D7TMI43.0e-3292.21Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g03230 PE=3 SV=... [more]
A0A0R0EVK71.1e-3193.51Uncharacterized protein OS=Glycine max OX=3847 GN=100777404 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G54085.13.4e-2060.26Yos1-like protein [more]
AT3G54085.23.4e-2060.26Yos1-like protein [more]
AT2G37975.14.4e-2058.97Yos1-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013880Yos1-likePFAMPF08571Yos1coord: 3..77
e-value: 8.1E-23
score: 80.5
IPR013880Yos1-likePANTHERPTHR15858UNCHARACTERIZEDcoord: 1..77
NoneNo IPR availablePANTHERPTHR15858:SF4YOS1-LIKE PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003420.1MS003420.1mRNA