MS003419 (gene) Bitter gourd (TR) v1

Overview


Name	MS003419
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	oxysterol-binding protein-related protein 2A-like isoform X1
Location	scaffold234: 2754777 .. 2754914 (-)
RNA-Seq Expression	MS003419
Synteny	MS003419

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATCAGCCGCACGGAGAGTCTCACACTTCTAAGCCCGACCGAAGACTTCCGATTGATCGAAGAAATTTCGACGAATCGCCTATTGAGGATCGATAGCGTGAGCGGGAGACGGAAGCGGCAGAAAACTGTGGGAATC

mRNA sequence

AAAATCAGCCGCACGGAGAGTCTCACACTTCTAAGCCCGACCGAAGACTTCCGATTGATCGAAGAAATTTCGACGAATCGCCTATTGAGGATCGATAGCGTGAGCGGGAGACGGAAGCGGCAGAAAACTGTGGGAATC

Coding sequence (CDS)

AAAATCAGCCGCACGGAGAGTCTCACACTTCTAAGCCCGACCGAAGACTTCCGATTGATCGAAGAAATTTCGACGAATCGCCTATTGAGGATCGATAGCGTGAGCGGGAGACGGAAGCGGCAGAAAACTGTGGGAATC

Protein sequence

KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI

Homology

[Close]

BLAST of MS003419 vs. NCBI nr
Match: XP_022154017.1 (oxysterol-binding protein-related protein 2A-like isoform X1 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 9.7e-09
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KISR E+LTLLSP ED RLI +ISTNRLLRIDS SGRRK QKT GI
Sbjct: 89  KISRPENLTLLSPNEDVRLIGQISTNRLLRIDSASGRRKGQKTAGI 134

[Close]

BLAST of MS003419 vs. NCBI nr
Match: XP_022154018.1 (oxysterol-binding protein-related protein 2A-like isoform X2 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 9.7e-09
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KISR E+LTLLSP ED RLI +ISTNRLLRIDS SGRRK QKT GI
Sbjct: 89  KISRPENLTLLSPNEDVRLIGQISTNRLLRIDSASGRRKGQKTAGI 134

[Close]

BLAST of MS003419 vs. NCBI nr
Match: XP_022737012.1 (oxysterol-binding protein-related protein 2A-like isoform X3 [Durio zibethinus])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSPT+D RLI +ISTNRL R+DS SGRRK QKTVGI
Sbjct: 90  KIRRAETLNLLSPTDDVRLIGDISTNRLSRMDSCSGRRKHQKTVGI 135

[Close]

BLAST of MS003419 vs. NCBI nr
Match: XP_022737011.1 (oxysterol-binding protein-related protein 2A-like isoform X2 [Durio zibethinus])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSPT+D RLI +ISTNRL R+DS SGRRK QKTVGI
Sbjct: 90  KIRRAETLNLLSPTDDVRLIGDISTNRLSRMDSCSGRRKHQKTVGI 135

[Close]

BLAST of MS003419 vs. NCBI nr
Match: XP_022737010.1 (oxysterol-binding protein-related protein 2A-like isoform X1 [Durio zibethinus])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSPT+D RLI +ISTNRL R+DS SGRRK QKTVGI
Sbjct: 90  KIRRAETLNLLSPTDDVRLIGDISTNRLSRMDSCSGRRKHQKTVGI 135

[Close]

BLAST of MS003419 vs. ExPASy Swiss-Prot
Match: Q940Y1 (Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana OX=3702 GN=ORP2A PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-08
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSP +D RLI +IS  RL R+DS SGRRK+QKTVGI
Sbjct: 83  KIRRPENLNLLSPDDDVRLIGDISGERLSRMDSCSGRRKQQKTVGI 128

[Close]

BLAST of MS003419 vs. ExPASy Swiss-Prot
Match: Q9SU36 (Oxysterol-binding protein-related protein 2B OS=Arabidopsis thaliana OX=3702 GN=ORP2B PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 4.7e-06
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSG--RRKRQKTVGI 47
           KI R E++ LLSP++D RLI +IST+RLLR+ S SG  RRK  K +GI
Sbjct: 58  KIRRPENVNLLSPSDDLRLIGDISTDRLLRMKSCSGRSRRKHHKNIGI 105

[Close]

BLAST of MS003419 vs. ExPASy TrEMBL
Match: A0A6J1DKI8 (oxysterol-binding protein-related protein 2A-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021376 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-09
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KISR E+LTLLSP ED RLI +ISTNRLLRIDS SGRRK QKT GI
Sbjct: 89  KISRPENLTLLSPNEDVRLIGQISTNRLLRIDSASGRRKGQKTAGI 134

[Close]

BLAST of MS003419 vs. ExPASy TrEMBL
Match: A0A6J1DJ42 (oxysterol-binding protein-related protein 2A-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021376 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-09
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KISR E+LTLLSP ED RLI +ISTNRLLRIDS SGRRK QKT GI
Sbjct: 89  KISRPENLTLLSPNEDVRLIGQISTNRLLRIDSASGRRKGQKTAGI 134

[Close]

BLAST of MS003419 vs. ExPASy TrEMBL
Match: A0A6P5YAI2 (oxysterol-binding protein-related protein 2A-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111289915 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSPT+D RLI +ISTNRL R+DS SGRRK QKTVGI
Sbjct: 90  KIRRAETLNLLSPTDDVRLIGDISTNRLSRMDSCSGRRKHQKTVGI 135

[Close]

BLAST of MS003419 vs. ExPASy TrEMBL
Match: A0A6P5Y9G3 (oxysterol-binding protein-related protein 2A-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111289915 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSPT+D RLI +ISTNRL R+DS SGRRK QKTVGI
Sbjct: 90  KIRRAETLNLLSPTDDVRLIGDISTNRLSRMDSCSGRRKHQKTVGI 135

[Close]

BLAST of MS003419 vs. ExPASy TrEMBL
Match: A0A6P5Y9D8 (oxysterol-binding protein-related protein 2A-like isoform X3 OS=Durio zibethinus OX=66656 GN=LOC111289915 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSPT+D RLI +ISTNRL R+DS SGRRK QKTVGI
Sbjct: 90  KIRRAETLNLLSPTDDVRLIGDISTNRLSRMDSCSGRRKHQKTVGI 135

[Close]

BLAST of MS003419 vs. TAIR 10
Match: AT4G22540.1 (OSBP(oxysterol binding protein)-related protein 2A )

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-09
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSGRRKRQKTVGI 47
           KI R E+L LLSP +D RLI +IS  RL R+DS SGRRK+QKTVGI
Sbjct: 83  KIRRPENLNLLSPDDDVRLIGDISGERLSRMDSCSGRRKQQKTVGI 128

[Close]

BLAST of MS003419 vs. TAIR 10
Match: AT4G12460.1 (OSBP(oxysterol binding protein)-related protein 2B )

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-07
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1   KISRTESLTLLSPTEDFRLIEEISTNRLLRIDSVSG--RRKRQKTVGI 47
           KI R E++ LLSP++D RLI +IST+RLLR+ S SG  RRK  K +GI
Sbjct: 58  KIRRPENVNLLSPSDDLRLIGDISTDRLLRMKSCSGRSRRKHHKNIGI 105

The following BLAST results are available for this feature:

BLAST of MS003419 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154017.1	9.7e-09	80.43	oxysterol-binding protein-related protein 2A-like isoform X1 [Momordica charanti...	[more]
XP_022154018.1	9.7e-09	80.43	oxysterol-binding protein-related protein 2A-like isoform X2 [Momordica charanti...	[more]
XP_022737012.1	1.8e-07	73.91	oxysterol-binding protein-related protein 2A-like isoform X3 [Durio zibethinus]	[more]
XP_022737011.1	1.8e-07	73.91	oxysterol-binding protein-related protein 2A-like isoform X2 [Durio zibethinus]	[more]
XP_022737010.1	1.8e-07	73.91	oxysterol-binding protein-related protein 2A-like isoform X1 [Durio zibethinus]	[more]

BLAST of MS003419 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940Y1	3.8e-08	67.39	Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SU36	4.7e-06	58.33	Oxysterol-binding protein-related protein 2B OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of MS003419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKI8	4.7e-09	80.43	oxysterol-binding protein-related protein 2A-like isoform X1 OS=Momordica charan...	[more]
A0A6J1DJ42	4.7e-09	80.43	oxysterol-binding protein-related protein 2A-like isoform X2 OS=Momordica charan...	[more]
A0A6P5YAI2	8.9e-08	73.91	oxysterol-binding protein-related protein 2A-like isoform X2 OS=Durio zibethinus...	[more]
A0A6P5Y9G3	8.9e-08	73.91	oxysterol-binding protein-related protein 2A-like isoform X1 OS=Durio zibethinus...	[more]
A0A6P5Y9D8	8.9e-08	73.91	oxysterol-binding protein-related protein 2A-like isoform X3 OS=Durio zibethinus...	[more]

BLAST of MS003419 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22540.1	2.7e-09	67.39	OSBP(oxysterol binding protein)-related protein 2A	[more]
AT4G12460.1	3.3e-07	58.33	OSBP(oxysterol binding protein)-related protein 2B	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003419.1	MS003419.1	mRNA