MS003413 (gene) Bitter gourd (TR) v1

Overview


Name	MS003413
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit beta, chloroplastic
Location	scaffold234: 2732437 .. 2732610 (+)
RNA-Seq Expression	MS003413
Synteny	MS003413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTGGATGCTACTACCGTACTATCAACAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCAAATCGTTGGTGAAGAACATTATGGAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAG

mRNA sequence

CATTTGGATGCTACTACCGTACTATCAACAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCAAATCGTTGGTGAAGAACATTATGGAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAG

Coding sequence (CDS)

CATTTGGATGCTACTACCGTACTATCAACAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCAAATCGTTGGTGAAGAACATTATGGAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAG

Protein sequence

HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Homology

[Close]

BLAST of MS003413 vs. NCBI nr
Match: BAG66982.1 (ATP synthase beta subunit, partial [Rinorea subintegrifolia])

HSP 1 Score: 114.0 bits (284), Expect = 4.3e-22
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 337 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 394

[Close]

BLAST of MS003413 vs. NCBI nr
Match: YP_010132534.1 (ATP synthase CF1 beta subunit [Vicia cracca] >QQD90269.1 ATP synthase CF1 beta subunit [Vicia cracca])

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYGTAQRVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. NCBI nr
Match: AAY19339.1 (ATP synthase beta subunit, partial [Anisophyllea fallax])

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 331 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYGTAQRVKQTLQRYKELQ 388

[Close]

BLAST of MS003413 vs. NCBI nr
Match: AAY42227.1 (ATP synthase beta subunit, partial [Anisophyllea myriosticta])

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 327 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYGTAQRVKQTLQRYKELQ 384

[Close]

BLAST of MS003413 vs. NCBI nr
Match: BAF40477.1 (ATP synthase beta subunit, partial [Pimelodendron griffithianum])

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 337 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYDTAQRVKQTLQRYKELQ 394

[Close]

BLAST of MS003413 vs. ExPASy Swiss-Prot
Match: B1NWF7 (ATP synthase subunit beta, chloroplastic OS=Manihot esculenta OX=3983 GN=atpB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-24
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 347 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQ 404

[Close]

BLAST of MS003413 vs. ExPASy Swiss-Prot
Match: Q14FF0 (ATP synthase subunit beta, chloroplastic OS=Populus alba OX=43335 GN=atpB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-24
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. ExPASy Swiss-Prot
Match: Q95FL8 (ATP synthase subunit beta, chloroplastic OS=Populus tremuloides OX=3693 GN=atpB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-24
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. ExPASy Swiss-Prot
Match: A4GYR7 (ATP synthase subunit beta, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.8e-24
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. ExPASy Swiss-Prot
Match: Q3V527 (ATP synthase subunit beta, chloroplastic OS=Acorus calamus OX=4465 GN=atpB PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. ExPASy TrEMBL
Match: B3XY66 (ATP synthase subunit beta (Fragment) OS=Rinorea subintegrifolia OX=317436 GN=atpB PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 337 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 394

[Close]

BLAST of MS003413 vs. ExPASy TrEMBL
Match: A3KLS4 (ATP synthase subunit beta (Fragment) OS=Anisophyllea myriosticta OX=328792 GN=atpB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 327 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYGTAQRVKQTLQRYKELQ 384

[Close]

BLAST of MS003413 vs. ExPASy TrEMBL
Match: Q29VA2 (ATP synthase subunit beta (Fragment) OS=Anisophyllea fallax OX=106632 GN=atpB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 331 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYGTAQRVKQTLQRYKELQ 388

[Close]

BLAST of MS003413 vs. ExPASy TrEMBL
Match: A0A7T5BXX5 (ATP synthase CF1 beta subunit OS=Vicia cracca OX=3905 GN=atpB PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYGTAQRVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. ExPASy TrEMBL
Match: A0ZQ72 (ATP synthase subunit beta (Fragment) OS=Pimelodendron griffithianum OX=212315 GN=atpB PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Sbjct: 337 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYDTAQRVKQTLQRYKELQ 394

[Close]

BLAST of MS003413 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-24
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHY TAQ+VKQTLQRYKELQ
Sbjct: 345 HLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQQVKQTLQRYKELQ 402

[Close]

BLAST of MS003413 vs. TAIR 10
Match: AT5G08670.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS  ++  GIYPAVDPLDSTS ML P I+GEEHY TA+ V++ LQ YK LQ
Sbjct: 405 HLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQ 462

[Close]

BLAST of MS003413 vs. TAIR 10
Match: AT5G08680.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS  ++  GIYPAVDPLDSTS ML P I+GEEHY TA+ V++ LQ YK LQ
Sbjct: 408 HLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQ 465

[Close]

BLAST of MS003413 vs. TAIR 10
Match: AT5G08690.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ 59
           HLDATTVLS  ++  GIYPAVDPLDSTS ML P I+GEEHY TA+ V++ LQ YK LQ
Sbjct: 405 HLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQ 462

The following BLAST results are available for this feature:

BLAST of MS003413 vs. NCBI nr


Match Name	E-value	Identity	Description
BAG66982.1	4.3e-22	98.28	ATP synthase beta subunit, partial [Rinorea subintegrifolia]	[more]
YP_010132534.1	1.3e-21	96.55	ATP synthase CF1 beta subunit [Vicia cracca] >QQD90269.1 ATP synthase CF1 beta s...	[more]
AAY19339.1	1.3e-21	96.55	ATP synthase beta subunit, partial [Anisophyllea fallax]	[more]
AAY42227.1	1.3e-21	96.55	ATP synthase beta subunit, partial [Anisophyllea myriosticta]	[more]
BAF40477.1	2.8e-21	96.55	ATP synthase beta subunit, partial [Pimelodendron griffithianum]	[more]

BLAST of MS003413 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1NWF7	4.8e-24	96.55	ATP synthase subunit beta, chloroplastic OS=Manihot esculenta OX=3983 GN=atpB PE...	[more]
Q14FF0	4.8e-24	96.55	ATP synthase subunit beta, chloroplastic OS=Populus alba OX=43335 GN=atpB PE=3 S...	[more]
Q95FL8	4.8e-24	96.55	ATP synthase subunit beta, chloroplastic OS=Populus tremuloides OX=3693 GN=atpB ...	[more]
A4GYR7	4.8e-24	96.55	ATP synthase subunit beta, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpB ...	[more]
Q3V527	1.4e-23	94.83	ATP synthase subunit beta, chloroplastic OS=Acorus calamus OX=4465 GN=atpB PE=3 ...	[more]

BLAST of MS003413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B3XY66	2.1e-22	98.28	ATP synthase subunit beta (Fragment) OS=Rinorea subintegrifolia OX=317436 GN=atp...	[more]
A3KLS4	6.1e-22	96.55	ATP synthase subunit beta (Fragment) OS=Anisophyllea myriosticta OX=328792 GN=at...	[more]
Q29VA2	6.1e-22	96.55	ATP synthase subunit beta (Fragment) OS=Anisophyllea fallax OX=106632 GN=atpB PE...	[more]
A0A7T5BXX5	6.1e-22	96.55	ATP synthase CF1 beta subunit OS=Vicia cracca OX=3905 GN=atpB PE=4 SV=1	[more]
A0ZQ72	1.4e-21	96.55	ATP synthase subunit beta (Fragment) OS=Pimelodendron griffithianum OX=212315 GN...	[more]

BLAST of MS003413 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	2.9e-24	93.10	ATP synthase subunit beta	[more]
AT5G08670.1	2.2e-16	68.97	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	2.2e-16	68.97	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	2.2e-16	68.97	ATP synthase alpha/beta family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	GENE3D	1.10.1140.10		coord: 33..58 e-value: 5.7E-9 score: 37.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..32 e-value: 1.4E-7 score: 33.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..33
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..58
None	No IPR available	PANTHER	PTHR15184:SF65	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	coord: 1..58
None	No IPR available	SUPERFAMILY	47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 31..58
IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	PROSITE	PS00152	ATPASE_ALPHA_BETA	coord: 19..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003413.1	MS003413.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding