MS003407 (gene) Bitter gourd (TR) v1

Overview


Name	MS003407
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	WUSCHEL-related homeobox 5-like
Location	scaffold234: 2688117 .. 2688832 (+)
RNA-Seq Expression	MS003407
Synteny	MS003407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAATATGGATGTAAAAGTCGGGGTCGGGGTCGGTGGCGGTGGCGGGGACGGTGGCGGTGGTTACGGCGGGGGGAAGGGGAGTGGGAGTACAAAATGTGGGAGGTGGAATCCGACGGGAGAACAGGTAAAAGTGCTGACAGAGCTGTTCAGGTCAGGGCTTAGAACTCCGAGCAGTGATCAGATTCAGAAGATCTCTCATCAGCTCAGCTTTTACGGCAACATCGAGAGCAAGAATGTGTTCTATTGGTTCCAAAATCATAAAGCCAGAGAGAGACACAAGCGTCGCAAACTCATTTCTCATGATCATCATAATCATAATCATAATCATCATCCTATTCCTATCAAATATATTGACACTACTCACCAACATTTCATTTCCCCTCCAAACAGTATGTTTTCAAGTCATTTCAAGAGATTATTAATTATGATGATTGTGATTATGTTTTAGATTCATGGTTGTGTTTTTTTGGTTTTGGGGTTTCAGCAGATCATTTTGTGGAGATGGAGCCAGAAAGAATGAGGAAAACGCTTCAACTTTTCCCAGTAAACTCAGTTGATGAAGCAGAAGTAGAAGCAGAAGCAGAAGCAGAAGCAGATGATGAGTTTATTAAAGTAAATGGGAAGCAGTATGAGGAGGATACAGCAGCTTTCACCTACAAAATAGAGACAAAAATGGATGATCCTCCATTATTGGATCTTCGTTTAAGCTTTCTG

mRNA sequence

CAGAATATGGATGTAAAAGTCGGGGTCGGGGTCGGTGGCGGTGGCGGGGACGGTGGCGGTGGTTACGGCGGGGGGAAGGGGAGTGGGAGTACAAAATGTGGGAGGTGGAATCCGACGGGAGAACAGGTAAAAGTGCTGACAGAGCTGTTCAGGTCAGGGCTTAGAACTCCGAGCAGTGATCAGATTCAGAAGATCTCTCATCAGCTCAGCTTTTACGGCAACATCGAGAGCAAGAATGTGTTCTATTGGTTCCAAAATCATAAAGCCAGAGAGAGACACAAGCGTCGCAAACTCATTTCTCATGATCATCATAATCATAATCATAATCATCATCCTATTCCTATCAAATATATTGACACTACTCACCAACATTTCATTTCCCCTCCAAACAGTATGTTTTCAAATCATTTTGTGGAGATGGAGCCAGAAAGAATGAGGAAAACGCTTCAACTTTTCCCAGTAAACTCAGTTGATGAAGCAGAAGTAGAAGCAGAAGCAGAAGCAGAAGCAGATGATGAGTTTATTAAAGTAAATGGGAAGCAGTATGAGGAGGATACAGCAGCTTTCACCTACAAAATAGAGACAAAAATGGATGATCCTCCATTATTGGATCTTCGTTTAAGCTTTCTG

Coding sequence (CDS)

CAGAATATGGATGTAAAAGTCGGGGTCGGGGTCGGTGGCGGTGGCGGGGACGGTGGCGGTGGTTACGGCGGGGGGAAGGGGAGTGGGAGTACAAAATGTGGGAGGTGGAATCCGACGGGAGAACAGGTAAAAGTGCTGACAGAGCTGTTCAGGTCAGGGCTTAGAACTCCGAGCAGTGATCAGATTCAGAAGATCTCTCATCAGCTCAGCTTTTACGGCAACATCGAGAGCAAGAATGTGTTCTATTGGTTCCAAAATCATAAAGCCAGAGAGAGACACAAGCGTCGCAAACTCATTTCTCATGATCATCATAATCATAATCATAATCATCATCCTATTCCTATCAAATATATTGACACTACTCACCAACATTTCATTTCCCCTCCAAACAGTATGTTTTCAAATCATTTTGTGGAGATGGAGCCAGAAAGAATGAGGAAAACGCTTCAACTTTTCCCAGTAAACTCAGTTGATGAAGCAGAAGTAGAAGCAGAAGCAGAAGCAGAAGCAGATGATGAGTTTATTAAAGTAAATGGGAAGCAGTATGAGGAGGATACAGCAGCTTTCACCTACAAAATAGAGACAAAAATGGATGATCCTCCATTATTGGATCTTCGTTTAAGCTTTCTG

Protein sequence

QNMDVKVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDTTHQHFISPPNSMFSNHFVEMEPERMRKTLQLFPVNSVDEAEVEAEAEAEADDEFIKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL

Homology

[Close]

BLAST of MS003407 vs. NCBI nr
Match: XP_022133651.1 (WUSCHEL-related homeobox 5-like [Momordica charantia])

HSP 1 Score: 383.6 bits (984), Expect = 1.1e-102
Identity = 204/216 (94.44%), Postives = 204/216 (94.44%), Query Frame = 0


Query: 1   QNMDVKVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSD 60
           QNMDVKVGVGV  GGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSD
Sbjct: 22  QNMDVKVGVGV--GGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSD 81

Query: 61  QIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDT 120
           QIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDT
Sbjct: 82  QIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDT 141

Query: 121 THQHFISPPNSMFSNHFVEMEPERMRKTLQLFPVNSVD------EAEVEAEAEAEADDEF 180
           THQHFISPPN    NHFVEMEPERMRKTLQLFPVNSVD      EAEVEAEAEAEADDEF
Sbjct: 142 THQHFISPPN----NHFVEMEPERMRKTLQLFPVNSVDEAEVEAEAEVEAEAEAEADDEF 201

Query: 181 IKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
           IKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL
Sbjct: 202 IKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 231

[Close]

BLAST of MS003407 vs. NCBI nr
Match: KAG7033309.1 (WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 9.1e-54
Identity = 139/205 (67.80%), Postives = 151/205 (73.66%), Query Frame = 0


Query: 13  GGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFY 72
           GGGGDGGG    GKGS S+KCGRWNPT EQVKVLTELFRSGLRTPSSDQIQKISHQLSFY
Sbjct: 15  GGGGDGGG--MAGKGSMSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHQLSFY 74

Query: 73  GNIESKNVFYWFQNHKARERHKRRKL-ISHDHHNHNHNHHPIPIKYIDTTHQHFISPPNS 132
           G IESKNVFYWFQNHKARER KRRK+ IS DH +H+H+HH           QHFI PP S
Sbjct: 75  GKIESKNVFYWFQNHKARERQKRRKVSISLDHTHHHHHHH---------QQQHFILPPCS 134

Query: 133 MFSNH------FVEMEPERMRKTLQLFPVNSVDEAEVEAEAEAEADDEFIKVNGKQYEED 192
            +          +E+EPERM KTLQLFP+NS+DE E         +D   +VNGKQYEE 
Sbjct: 135 NYDQSTTNKGGTMELEPERMMKTLQLFPLNSIDETE-------GYNDHQFRVNGKQYEEA 194

Query: 193 TAAFTYKIETKMDDPPLLDLRLSFL 211
           T AFTYKI TKMD PP LDLRLSFL
Sbjct: 195 T-AFTYKIGTKMDHPP-LDLRLSFL 199

[Close]

BLAST of MS003407 vs. NCBI nr
Match: XP_022993526.1 (WUSCHEL-related homeobox 5-like [Cucurbita maxima])

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-52
Identity = 137/213 (64.32%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 6   KVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKI 65
           ++ V  GG GG+GGGG GGGKGSGS+KCGRWNPT EQVKVLTELFRSGLRTPSSDQIQKI
Sbjct: 8   RIYVKGGGCGGEGGGG-GGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKI 67

Query: 66  SHQLSFYGNIESKNVFYWFQNHKARERHKRRKL-ISHDH-HNHNHNHHPIPIKYIDTTHQ 125
           SHQLSFYG IESKNVFYWFQNHKARER KRRK+ +S DH H H H  HP+ +      + 
Sbjct: 68  SHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQHQHFLHPLHLSNDHHHNN 127

Query: 126 HFISPPNSMFSNH------FVEMEPERMRKTLQLFPVNSVDEAEVEAEAEAEADDEFIKV 185
           + I PP + F++        +E+EPERM KTLQLFP+NS+D      E +   D    +V
Sbjct: 128 NNIIPPTNHFADQSSPNKGIMELEPERMMKTLQLFPLNSID------ETQGSDDYHQFRV 187

Query: 186 NGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
           +GKQYE  T +FTYKIETKMD PP LDLRLSFL
Sbjct: 188 DGKQYEGAT-SFTYKIETKMDHPP-LDLRLSFL 211

[Close]

BLAST of MS003407 vs. NCBI nr
Match: KAG6602625.1 (WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 1.7e-52
Identity = 142/225 (63.11%), Postives = 155/225 (68.89%), Query Frame = 0


Query: 2   NMDVKVG----VGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTP 61
           NMD  +     V   GGGGDGGG    GKGS S+KCGRWNPT EQVKVLTELFRSGLRTP
Sbjct: 6   NMDEGISSRFYVKPAGGGGDGGG--MAGKGSMSSKCGRWNPTAEQVKVLTELFRSGLRTP 65

Query: 62  SSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKY 121
           SSDQIQKISHQLSFYG IESKNVFYWFQNHKARER KRRK+     H H+H+HH      
Sbjct: 66  SSDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSISLDHTHHHHHH------ 125

Query: 122 IDTTHQHFISPPNSMFSNHF------------VEMEPERMRKTLQLFPVNSVDEAEVEAE 181
                QHFI PP    SN+F            +E+EPERM KTLQLFP+NS+DE E +  
Sbjct: 126 -QQQQQHFILPP---CSNYFADDQSTTNKGGTMELEPERMMKTLQLFPLNSIDETEGD-- 185

Query: 182 AEAEADDEFIKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
                +D   +VNGKQYEE T AFTYKI TKMD PP LDLRLSFL
Sbjct: 186 -----NDHQFRVNGKQYEEAT-AFTYKIGTKMDHPP-LDLRLSFL 209

[Close]

BLAST of MS003407 vs. NCBI nr
Match: XP_022939921.1 (WUSCHEL-related homeobox 5-like [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-52
Identity = 134/213 (62.91%), Postives = 157/213 (73.71%), Query Frame = 0


Query: 6   KVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKI 65
           ++ V  GG  G+GGGG GGGKGSGS+KCGRWNPT EQVKVLTELFRSGLRTPSSDQIQKI
Sbjct: 15  RIYVKGGGCSGEGGGG-GGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKI 74

Query: 66  SHQLSFYGNIESKNVFYWFQNHKARERHKRRKL-ISHDH-HNHNHNHHPIPIKYIDTTHQ 125
           SHQLSFYG IESKNVFYWFQNHKARER KRRK+ +S DH H   H  HP+ +      + 
Sbjct: 75  SHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLSNDHNNNN 134

Query: 126 HFISPPNSMFSNH------FVEMEPERMRKTLQLFPVNSVDEAEVEAEAEAEADDEFIKV 185
           + I PP++ F++        +E+EPERM KTLQLFP+NS+D      E +   D    +V
Sbjct: 135 NNIIPPSNHFADQSSTNKGIMELEPERMMKTLQLFPLNSID------ETQGSDDYHQFRV 194

Query: 186 NGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
           +GKQ+ ED  +FTYKIETKMD PP LDLRLSFL
Sbjct: 195 DGKQF-EDATSFTYKIETKMDHPP-LDLRLSFL 218

[Close]

BLAST of MS003407 vs. ExPASy Swiss-Prot
Match: Q8H1D2 (WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana OX=3702 GN=WOX5 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 91/194 (46.91%), Postives = 121/194 (62.37%), Query Frame = 0


Query: 23  GGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFY 82
           G   G   TKCGRWNPT EQ+K+LT+LFR+GLRTP++DQIQKIS +LSFYG IESKNVFY
Sbjct: 12  GNNNGGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFY 71

Query: 83  WFQNHKARERHKRRKL-ISHDHHNHNHNHHPIPIKYIDTTHQHFISPPNSMFSNHFVEME 142
           WFQNHKARER KRRK+ I  DHH+H  +          T     IS  +          E
Sbjct: 72  WFQNHKARERQKRRKISIDFDHHHHQPS----------TRDVFEISEEDC--------QE 131

Query: 143 PERMRKTLQLFPVNSVDEAEVEAE-AEAEADDEFIKVNGKQYEEDTAAFTY----KIETK 202
            E++ +TLQLFPVNS +++  + +   A  ++++     ++Y  +T   ++        +
Sbjct: 132 EEKVIETLQLFPVNSFEDSNSKVDKMRARGNNQY-----REYIRETTTTSFSPYSSCGAE 182

Query: 203 MDDPPLLDLRLSFL 211
           M+ PP LDLRLSFL
Sbjct: 192 MEHPPPLDLRLSFL 182

[Close]

BLAST of MS003407 vs. ExPASy Swiss-Prot
Match: Q9FFK0 (WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.7e-24
Identity = 65/104 (62.50%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 24  GGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYW 83
           GG G+G+ KCGRWNPT EQVK+LT+LF++GLRTPS+DQIQKIS +LSFYG IESKNVFYW
Sbjct: 19  GGGGTGA-KCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYW 78

Query: 84  FQNHKARERHKRRKL--ISHDH---------HNHNHNHHPIPIK 117
           FQNHKARER K RK+  +  DH            N   H +P K
Sbjct: 79  FQNHKARERQKCRKISTVKFDHRQDTDLSKPRRDNVRRHQLPAK 121

[Close]

BLAST of MS003407 vs. ExPASy Swiss-Prot
Match: Q8W0F1 (WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX9 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 74/155 (47.74%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 27  GSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYWFQN 86
           G    KCGRWNPT EQVKVLTELFR+GLRTPS++QIQ+IS  LS +G +ESKNVFYWFQN
Sbjct: 6   GRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQN 65

Query: 87  HKARERH---KRRKLISHDHHNHNHNHHPIPIKYIDTTHQHFISPPNS-----MFSNH-- 146
           HKARERH   KRR+  S      N +         D      + PP S      + +H  
Sbjct: 66  HKARERHHHKKRRRGASSPDSGSNDDDGRAAAHEGDA--DLVLQPPESKREARSYGHHHR 125

Query: 147 --------FVEME-----PERMRKTLQLFPVNSVD 159
                    VE E     P R  +TL+LFP+ S D
Sbjct: 126 LMTCYVRDVVETEAMWERPTREVETLELFPLKSYD 158

[Close]

BLAST of MS003407 vs. ExPASy Swiss-Prot
Match: Q6X7K0 (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana OX=3702 GN=WOX1 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 35  RWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHK 94
           RWNPT +Q++VL EL+R G RTPS+D IQ+I+ QL  YG IE KNVFYWFQNHKARER K
Sbjct: 76  RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135

Query: 95  RRKLISHDH 104
           RR+ +   H
Sbjct: 136 RRRQMETGH 144

[Close]

BLAST of MS003407 vs. ExPASy Swiss-Prot
Match: A2XZR3 (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WOX2 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 18  GGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIES 77
           GGGG  G    GST   RW PT EQ+ +L E++R GLRTP++ QIQ+I+  LS YG IE 
Sbjct: 12  GGGGSTGAAAVGSTT--RWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEG 71

Query: 78  KNVFYWFQNHKARERHKRRKLISHDHH----NHNHNHH 112
           KNVFYWFQNHKAR+R K R+ +   HH     H ++HH
Sbjct: 72  KNVFYWFQNHKARDRQKLRRRLCISHHLLSCAHYYHHH 107

[Close]

BLAST of MS003407 vs. ExPASy TrEMBL
Match: A0A6J1BVQ5 (WUSCHEL-related homeobox 5-like OS=Momordica charantia OX=3673 GN=LOC111006187 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.1e-103
Identity = 204/216 (94.44%), Postives = 204/216 (94.44%), Query Frame = 0


Query: 1   QNMDVKVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSD 60
           QNMDVKVGVGV  GGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSD
Sbjct: 22  QNMDVKVGVGV--GGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSD 81

Query: 61  QIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDT 120
           QIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDT
Sbjct: 82  QIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKYIDT 141

Query: 121 THQHFISPPNSMFSNHFVEMEPERMRKTLQLFPVNSVD------EAEVEAEAEAEADDEF 180
           THQHFISPPN    NHFVEMEPERMRKTLQLFPVNSVD      EAEVEAEAEAEADDEF
Sbjct: 142 THQHFISPPN----NHFVEMEPERMRKTLQLFPVNSVDEAEVEAEAEVEAEAEAEADDEF 201

Query: 181 IKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
           IKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL
Sbjct: 202 IKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 231

[Close]

BLAST of MS003407 vs. ExPASy TrEMBL
Match: A0A6J1JWK4 (WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111489507 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 6.4e-53
Identity = 137/213 (64.32%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 6   KVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKI 65
           ++ V  GG GG+GGGG GGGKGSGS+KCGRWNPT EQVKVLTELFRSGLRTPSSDQIQKI
Sbjct: 8   RIYVKGGGCGGEGGGG-GGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKI 67

Query: 66  SHQLSFYGNIESKNVFYWFQNHKARERHKRRKL-ISHDH-HNHNHNHHPIPIKYIDTTHQ 125
           SHQLSFYG IESKNVFYWFQNHKARER KRRK+ +S DH H H H  HP+ +      + 
Sbjct: 68  SHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQHQHFLHPLHLSNDHHHNN 127

Query: 126 HFISPPNSMFSNH------FVEMEPERMRKTLQLFPVNSVDEAEVEAEAEAEADDEFIKV 185
           + I PP + F++        +E+EPERM KTLQLFP+NS+D      E +   D    +V
Sbjct: 128 NNIIPPTNHFADQSSPNKGIMELEPERMMKTLQLFPLNSID------ETQGSDDYHQFRV 187

Query: 186 NGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
           +GKQYE  T +FTYKIETKMD PP LDLRLSFL
Sbjct: 188 DGKQYEGAT-SFTYKIETKMDHPP-LDLRLSFL 211

[Close]

BLAST of MS003407 vs. ExPASy TrEMBL
Match: A0A6J1FH52 (WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111445643 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.2e-52
Identity = 134/213 (62.91%), Postives = 157/213 (73.71%), Query Frame = 0


Query: 6   KVGVGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKI 65
           ++ V  GG  G+GGGG GGGKGSGS+KCGRWNPT EQVKVLTELFRSGLRTPSSDQIQKI
Sbjct: 15  RIYVKGGGCSGEGGGG-GGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKI 74

Query: 66  SHQLSFYGNIESKNVFYWFQNHKARERHKRRKL-ISHDH-HNHNHNHHPIPIKYIDTTHQ 125
           SHQLSFYG IESKNVFYWFQNHKARER KRRK+ +S DH H   H  HP+ +      + 
Sbjct: 75  SHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLSNDHNNNN 134

Query: 126 HFISPPNSMFSNH------FVEMEPERMRKTLQLFPVNSVDEAEVEAEAEAEADDEFIKV 185
           + I PP++ F++        +E+EPERM KTLQLFP+NS+D      E +   D    +V
Sbjct: 135 NNIIPPSNHFADQSSTNKGIMELEPERMMKTLQLFPLNSID------ETQGSDDYHQFRV 194

Query: 186 NGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
           +GKQ+ ED  +FTYKIETKMD PP LDLRLSFL
Sbjct: 195 DGKQF-EDATSFTYKIETKMDHPP-LDLRLSFL 218

[Close]

BLAST of MS003407 vs. ExPASy TrEMBL
Match: A0A6J1GMY2 (WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111455970 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 140/225 (62.22%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 2   NMDVKVG----VGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTP 61
           NMD  +     V   GGGGDGGG    GKGS S+KCGRWNPT EQVKVLTELFRSGLRTP
Sbjct: 6   NMDEGISSRFYVKPAGGGGDGGG--VAGKGSMSSKCGRWNPTAEQVKVLTELFRSGLRTP 65

Query: 62  SSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKY 121
           SSDQIQKISHQLSFYG IESKNVFYWFQNHKARER KRRK+     H H+H+HH      
Sbjct: 66  SSDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSISLDHTHHHHHH------ 125

Query: 122 IDTTHQHFISPPNSMFSNHF------------VEMEPERMRKTLQLFPVNSVDEAEVEAE 181
                QHFI PP    SN+F            +E+EPERM KTLQLFP+NS+ E E +  
Sbjct: 126 --QQQQHFILPP---CSNYFADDQSTTNKGGTMELEPERMMKTLQLFPLNSIGETEGD-- 185

Query: 182 AEAEADDEFIKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
                +D   +VNGKQYEE T AFTYKI TKM+ PP LDLRLSFL
Sbjct: 186 -----NDHQFRVNGKQYEEAT-AFTYKIGTKMEHPP-LDLRLSFL 208

[Close]

BLAST of MS003407 vs. ExPASy TrEMBL
Match: A0A6J1JQD8 (WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111487393 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.7e-51
Identity = 140/225 (62.22%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 2   NMDVKVG----VGVGGGGGDGGGGYGGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTP 61
           NMD  +     V   GGGGDGGG    GKGS S+KCGRWNPT EQVKVLTELF SGLRTP
Sbjct: 6   NMDEGISSRFYVKPAGGGGDGGG--VAGKGSMSSKCGRWNPTAEQVKVLTELFMSGLRTP 65

Query: 62  SSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHKRRKLISHDHHNHNHNHHPIPIKY 121
           SSDQIQKISHQLSFYG IESKNVFYWFQNHKARER KRRK+ +   H H+H+H       
Sbjct: 66  SSDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSTSLDHTHHHHHQ------ 125

Query: 122 IDTTHQHFISPPNSMFSNHF------------VEMEPERMRKTLQLFPVNSVDEAEVEAE 181
                QHFI PP    SN+F            VE+EPERM KTLQLFP+NS+DE E +  
Sbjct: 126 ---QQQHFILPP---CSNYFADDQSTTNKGGTVELEPERMMKTLQLFPLNSIDETEGD-- 185

Query: 182 AEAEADDEFIKVNGKQYEEDTAAFTYKIETKMDDPPLLDLRLSFL 211
                +D   +VNG+QYEE T AFTYKI TKMD PP LDLRLSFL
Sbjct: 186 -----NDHQFRVNGEQYEEAT-AFTYKIGTKMDHPP-LDLRLSFL 207

[Close]

BLAST of MS003407 vs. TAIR 10
Match: AT3G11260.1 (WUSCHEL related homeobox 5 )

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-33
Identity = 91/194 (46.91%), Postives = 121/194 (62.37%), Query Frame = 0


Query: 23  GGGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFY 82
           G   G   TKCGRWNPT EQ+K+LT+LFR+GLRTP++DQIQKIS +LSFYG IESKNVFY
Sbjct: 12  GNNNGGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFY 71

Query: 83  WFQNHKARERHKRRKL-ISHDHHNHNHNHHPIPIKYIDTTHQHFISPPNSMFSNHFVEME 142
           WFQNHKARER KRRK+ I  DHH+H  +          T     IS  +          E
Sbjct: 72  WFQNHKARERQKRRKISIDFDHHHHQPS----------TRDVFEISEEDC--------QE 131

Query: 143 PERMRKTLQLFPVNSVDEAEVEAE-AEAEADDEFIKVNGKQYEEDTAAFTY----KIETK 202
            E++ +TLQLFPVNS +++  + +   A  ++++     ++Y  +T   ++        +
Sbjct: 132 EEKVIETLQLFPVNSFEDSNSKVDKMRARGNNQY-----REYIRETTTTSFSPYSSCGAE 182

Query: 203 MDDPPLLDLRLSFL 211
           M+ PP LDLRLSFL
Sbjct: 192 MEHPPPLDLRLSFL 182

[Close]

BLAST of MS003407 vs. TAIR 10
Match: AT5G05770.1 (WUSCHEL related homeobox 7 )

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-25
Identity = 65/104 (62.50%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 24  GGKGSGSTKCGRWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYW 83
           GG G+G+ KCGRWNPT EQVK+LT+LF++GLRTPS+DQIQKIS +LSFYG IESKNVFYW
Sbjct: 19  GGGGTGA-KCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYW 78

Query: 84  FQNHKARERHKRRKL--ISHDH---------HNHNHNHHPIPIK 117
           FQNHKARER K RK+  +  DH            N   H +P K
Sbjct: 79  FQNHKARERQKCRKISTVKFDHRQDTDLSKPRRDNVRRHQLPAK 121

[Close]

BLAST of MS003407 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-20
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 35  RWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHK 94
           RWNPT +Q++VL EL+R G RTPS+D IQ+I+ QL  YG IE KNVFYWFQNHKARER K
Sbjct: 76  RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135

Query: 95  RRKLISHDH 104
           RR+ +   H
Sbjct: 136 RRRQMETGH 144

[Close]

BLAST of MS003407 vs. TAIR 10
Match: AT2G01500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-19
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 35  RWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHK 94
           RWNPT EQ+  L EL+RSG RTP+++QIQ+I+ +L  YG IE KNVFYWFQNHKARER K
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120

Query: 95  RRK 98
           RR+
Sbjct: 121 RRR 123

[Close]

BLAST of MS003407 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-18
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 35  RWNPTGEQVKVLTELFRSGLRTPSSDQIQKISHQLSFYGNIESKNVFYWFQNHKARERHK 94
           RW PT EQ+ +L E++RSG+RTP++ QIQ+I+  L+FYG IE KNVFYWFQNHKAR+R K
Sbjct: 8   RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 95  RRKLIS------------------------------------------HDHHNHNHNHH 112
            RK ++                                          H HHNH+HNHH
Sbjct: 68  LRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNPYHHHHHNHHHNHH 126

The following BLAST results are available for this feature:

BLAST of MS003407 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133651.1	1.1e-102	94.44	WUSCHEL-related homeobox 5-like [Momordica charantia]	[more]
KAG7033309.1	9.1e-54	67.80	WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022993526.1	1.3e-52	64.32	WUSCHEL-related homeobox 5-like [Cucurbita maxima]	[more]
KAG6602625.1	1.7e-52	63.11	WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022939921.1	6.5e-52	62.91	WUSCHEL-related homeobox 5-like [Cucurbita moschata]	[more]

BLAST of MS003407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1D2	2.0e-32	46.91	WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana OX=3702 GN=WOX5 PE=2 SV=1	[more]
Q9FFK0	2.7e-24	62.50	WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1	[more]
Q8W0F1	2.5e-22	47.74	WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX9 PE=2...	[more]
Q6X7K0	5.8e-19	65.22	WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana OX=3702 GN=WOX1 PE=2 SV=2	[more]
A2XZR3	2.1e-16	54.08	Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WO...	[more]

BLAST of MS003407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVQ5	5.1e-103	94.44	WUSCHEL-related homeobox 5-like OS=Momordica charantia OX=3673 GN=LOC111006187 P...	[more]
A0A6J1JWK4	6.4e-53	64.32	WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111489507 PE=3...	[more]
A0A6J1FH52	3.2e-52	62.91	WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111445643 PE...	[more]
A0A6J1GMY2	2.0e-51	62.22	WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111455970 PE...	[more]
A0A6J1JQD8	2.7e-51	62.22	WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111487393 PE=3...	[more]

BLAST of MS003407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11260.1	1.5e-33	46.91	WUSCHEL related homeobox 5	[more]
AT5G05770.1	1.9e-25	62.50	WUSCHEL related homeobox 7	[more]
AT3G18010.1	4.1e-20	65.22	WUSCHEL related homeobox 1	[more]
AT2G01500.1	2.7e-19	68.25	Homeodomain-like superfamily protein	[more]
AT2G28610.1	2.3e-18	42.02	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 31..98 e-value: 1.7E-4 score: 30.9
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 33..93 e-value: 2.5E-18 score: 65.7
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 29..94 score: 11.272352
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 35..95 e-value: 2.61497E-5 score: 38.7637
None	No IPR available	GENE3D	1.10.10.60		coord: 32..99 e-value: 1.2E-9 score: 39.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR45940:SF3	WUSCHEL-RELATED HOMEOBOX 7	coord: 23..176
IPR044555	Protein WUSCHEL-like	PANTHER	PTHR45940	WUSCHEL-RELATED HOMEOBOX 1-RELATED	coord: 23..176
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 30..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003407.1	MS003407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity