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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AAAGTTCGCAAAAGCAAGTACAAAGGTATCCTGCAGCGGCCATGGGGGAAATGGGTGGCAGAGATT mRNA sequence AAAGTTCGCAAAAGCAAGTACAAAGGTATCCTGCAGCGGCCATGGGGGAAATGGGTGGCAGAGATT Coding sequence (CDS) AAAGTTCGCAAAAGCAAGTACAAAGGTATCCTGCAGCGGCCATGGGGGAAATGGGTGGCAGAGATT Protein sequence
Homology
BLAST of MS003331 vs. TAIR 10
Match: AT1G53910.1 (related to AP2 12 ) HSP 1 Score: 40.8 bits (94), Expect = 1.6e-04 Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 0 Query: 3 RKSKYKGILQRPWGKWVAEI 23 RK++Y+GI QRPWGKW AEI Sbjct: 121 RKNQYRGIRQRPWGKWAAEI 140
BLAST of MS003331 vs. TAIR 10
Match: AT1G53910.2 (related to AP2 12 ) HSP 1 Score: 40.8 bits (94), Expect = 1.6e-04 Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 0 Query: 3 RKSKYKGILQRPWGKWVAEI 23 RK++Y+GI QRPWGKW AEI Sbjct: 121 RKNQYRGIRQRPWGKWAAEI 140
BLAST of MS003331 vs. TAIR 10
Match: AT1G53910.3 (related to AP2 12 ) HSP 1 Score: 40.8 bits (94), Expect = 1.6e-04 Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 0 Query: 3 RKSKYKGILQRPWGKWVAEI 23 RK++Y+GI QRPWGKW AEI Sbjct: 119 RKNQYRGIRQRPWGKWAAEI 138
BLAST of MS003331 vs. TAIR 10
Match: AT3G14230.1 (related to AP2 2 ) HSP 1 Score: 40.8 bits (94), Expect = 1.6e-04 Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 0 Query: 3 RKSKYKGILQRPWGKWVAEI 23 RK++Y+GI QRPWGKW AEI Sbjct: 124 RKNQYRGIRQRPWGKWAAEI 143
BLAST of MS003331 vs. TAIR 10
Match: AT3G14230.2 (related to AP2 2 ) HSP 1 Score: 40.8 bits (94), Expect = 1.6e-04 Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 0 Query: 3 RKSKYKGILQRPWGKWVAEI 23 RK++Y+GI QRPWGKW AEI Sbjct: 120 RKNQYRGIRQRPWGKWAAEI 139
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001471 | AP2/ERF domain | PFAM | PF00847 | AP2 | coord: 5..21 e-value: 1.7E-4 score: 21.8 |
IPR001471 | AP2/ERF domain | PROSITE | PS51032 | AP2_ERF | coord: 6..22 score: 8.952545 |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS003331.1 | MS003331.1 | mRNA |
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
molecular_function |
GO:0003700 |
DNA-binding transcription factor activity |
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