MS003305 (gene) Bitter gourd (TR) v1

Overview
NameMS003305
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS-adenosylmethionine decarboxylase proenzyme
Locationscaffold234: 1956882 .. 1957007 (-)
RNA-Seq ExpressionMS003305
SyntenyMS003305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTCCCTGCTATTGGATTTGAGGGCTTCGAATCTTTCTCGTTTTCTGAGCTAGGAATCTTCGCTGGCCCTGGAGGAATGGGGTTACATAGTTTGTCGAAAGTTAAGTTAGATGAAATCGTA

mRNA sequence

ATGACAGTCCCTGCTATTGGATTTGAGGGCTTCGAATCTTTCTCGTTTTCTGAGCTAGGAATCTTCGCTGGCCCTGGAGGAATGGGGTTACATAGTTTGTCGAAAGTTAAGTTAGATGAAATCGTA

Coding sequence (CDS)

ATGACAGTCCCTGCTATTGGATTTGAGGGCTTCGAATCTTTCTCGTTTTCTGAGCTAGGAATCTTCGCTGGCCCTGGAGGAATGGGGTTACATAGTTTGTCGAAAGTTAAGTTAGATGAAATCGTA

Protein sequence

MTVPAIGFEGFESFSFSELGIFAGPGGMGLHSLSKVKLDEIV
Homology
BLAST of MS003305 vs. NCBI nr
Match: XP_002525956.1 (S-adenosylmethionine decarboxylase proenzyme [Ricinus communis] >EEF36380.1 s-adenosylmethionine decarboxylase, putative [Ricinus communis])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          ++VP IGFEG+E     SFSE G FA PGGMGL SLSK +LDEI+
Sbjct: 3  LSVPPIGFEGYEKRLEVSFSEPGFFADPGGMGLRSLSKSQLDEIL 47

BLAST of MS003305 vs. NCBI nr
Match: XP_030952767.1 (S-adenosylmethionine decarboxylase proenzyme [Quercus lobata])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          M V AIGFEG+E     SF E GIFA PGGMGL SLSK +LDEI+
Sbjct: 4  MAVSAIGFEGYEKRLEVSFFEPGIFADPGGMGLRSLSKAQLDEIL 48

BLAST of MS003305 vs. NCBI nr
Match: XP_023904238.1 (S-adenosylmethionine decarboxylase proenzyme-like [Quercus suber])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          M V AIGFEG+E     SF E GIFA PGGMGL SLSK +LDEI+
Sbjct: 4  MAVSAIGFEGYEKRLEVSFFEPGIFADPGGMGLRSLSKAQLDEIL 48

BLAST of MS003305 vs. NCBI nr
Match: XP_021634259.1 (S-adenosylmethionine decarboxylase proenzyme-like [Manihot esculenta] >XP_021634267.1 S-adenosylmethionine decarboxylase proenzyme-like [Manihot esculenta] >OAY60368.1 hypothetical protein MANES_01G106600v8 [Manihot esculenta])

HSP 1 Score: 53.9 bits (128), Expect = 3.8e-04
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          + V AIGFEG+E     SFSE G FA PGGMGL SLSK ++DEI+
Sbjct: 3  LPVSAIGFEGYEKRLEISFSEPGFFADPGGMGLRSLSKSQIDEIL 47

BLAST of MS003305 vs. NCBI nr
Match: XP_022844785.1 (S-adenosylmethionine decarboxylase proenzyme-like [Olea europaea var. sylvestris] >CAA2987058.1 S-adenosylmethionine decarboxylase proenzyme-like [Olea europaea subsp. europaea])

HSP 1 Score: 53.9 bits (128), Expect = 3.8e-04
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          +TV AIGFEG+E     SF E GIF+ PGG+GL SLSK +LDEI+
Sbjct: 3  LTVSAIGFEGYEKRLEISFYEPGIFSDPGGLGLRSLSKSQLDEIL 47

BLAST of MS003305 vs. ExPASy Swiss-Prot
Match: O80402 (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris OX=4096 GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.6e-06
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          + V AIGFEGFE     SF E G+FA P G GL SLSK +LDEI+
Sbjct: 5  LPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEIL 49

BLAST of MS003305 vs. ExPASy Swiss-Prot
Match: Q04694 (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum OX=4113 GN=SAMDC PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.6e-06
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          + V AIGFEGFE     SF E G+FA P G GL SLSK +LDEI+
Sbjct: 5  LPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEIL 49

BLAST of MS003305 vs. ExPASy Swiss-Prot
Match: O04009 (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum OX=4097 GN=SAMDC PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.6e-06
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          + V AIGFEGFE     SF E G+FA P G GL SLSK +LDEI+
Sbjct: 5  LPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEIL 49

BLAST of MS003305 vs. ExPASy Swiss-Prot
Match: Q96555 (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium OX=4076 GN=SAMDC PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          + V AIGFEGFE     SF E G+F+ P G GL SLSK +LDEI+
Sbjct: 5  LPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEIL 49

BLAST of MS003305 vs. ExPASy Swiss-Prot
Match: Q43820 (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum OX=3888 GN=SAMDC PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          M V AIGFEGFE     SFS+ G+F+ P G GL SL+K +LDEI+
Sbjct: 1  MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEIL 45

BLAST of MS003305 vs. ExPASy TrEMBL
Match: B9SIY7 (S-adenosylmethionine decarboxylase proenzyme OS=Ricinus communis OX=3988 GN=RCOM_0596710 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          ++VP IGFEG+E     SFSE G FA PGGMGL SLSK +LDEI+
Sbjct: 3  LSVPPIGFEGYEKRLEVSFSEPGFFADPGGMGLRSLSKSQLDEIL 47

BLAST of MS003305 vs. ExPASy TrEMBL
Match: A0A7N2KWW5 (S-adenosylmethionine decarboxylase proenzyme OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-05
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          M V AIGFEG+E     SF E GIFA PGGMGL SLSK +LDEI+
Sbjct: 4  MAVSAIGFEGYEKRLEVSFFEPGIFADPGGMGLRSLSKAQLDEIL 48

BLAST of MS003305 vs. ExPASy TrEMBL
Match: A0A2C9WJR3 (S-adenosylmethionine decarboxylase proenzyme OS=Manihot esculenta OX=3983 GN=MANES_01G106600 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-04
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MTVPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          + V AIGFEG+E     SFSE G FA PGGMGL SLSK ++DEI+
Sbjct: 3  LPVSAIGFEGYEKRLEISFSEPGFFADPGGMGLRSLSKSQIDEIL 47

BLAST of MS003305 vs. ExPASy TrEMBL
Match: A0A7C9FAX7 (Adenosylmethionine decarboxylase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-04
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 3  VPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          V AIGFEGFE     SF ELGIFA P GMGL +LSK +LDEI+
Sbjct: 15 VSAIGFEGFEKRLEISFFELGIFADPEGMGLRALSKAQLDEIL 57

BLAST of MS003305 vs. ExPASy TrEMBL
Match: A0A7C9EZY3 (Adenosylmethionine decarboxylase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-04
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 3  VPAIGFEGFE---SFSFSELGIFAGPGGMGLHSLSKVKLDEIV 43
          V AIGFEGFE     SF ELGIFA P GMGL +LSK +LDEI+
Sbjct: 15 VSAIGFEGFEKRLEISFFELGIFADPEGMGLRALSKAQLDEIL 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_002525956.17.8e-0564.44S-adenosylmethionine decarboxylase proenzyme [Ricinus communis] >EEF36380.1 s-ad... [more]
XP_030952767.11.0e-0466.67S-adenosylmethionine decarboxylase proenzyme [Quercus lobata][more]
XP_023904238.11.0e-0466.67S-adenosylmethionine decarboxylase proenzyme-like [Quercus suber][more]
XP_021634259.13.8e-0462.22S-adenosylmethionine decarboxylase proenzyme-like [Manihot esculenta] >XP_021634... [more]
XP_022844785.13.8e-0462.22S-adenosylmethionine decarboxylase proenzyme-like [Olea europaea var. sylvestris... [more]
Match NameE-valueIdentityDescription
O804025.6e-0660.00S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris OX=4096 GN=... [more]
Q046945.6e-0660.00S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum OX=4113 GN=SAM... [more]
O040095.6e-0660.00S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum OX=4097 GN=SAM... [more]
Q965551.2e-0557.78S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium OX=4076 GN=SAM... [more]
Q438201.2e-0557.78S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum OX=3888 GN=SAMDC P... [more]
Match NameE-valueIdentityDescription
B9SIY73.8e-0564.44S-adenosylmethionine decarboxylase proenzyme OS=Ricinus communis OX=3988 GN=RCOM... [more]
A0A7N2KWW54.9e-0566.67S-adenosylmethionine decarboxylase proenzyme OS=Quercus lobata OX=97700 PE=3 SV=... [more]
A0A2C9WJR31.9e-0462.22S-adenosylmethionine decarboxylase proenzyme OS=Manihot esculenta OX=3983 GN=MAN... [more]
A0A7C9FAX71.9e-0467.44Adenosylmethionine decarboxylase (Fragment) OS=Opuntia streptacantha OX=393608 P... [more]
A0A7C9EZY31.9e-0467.44Adenosylmethionine decarboxylase (Fragment) OS=Opuntia streptacantha OX=393608 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003305.1MS003305.1mRNA