MS003304 (gene) Bitter gourd (TR) v1

Overview


Name	MS003304
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	stress-induced protein KIN2-like
Location	scaffold234: 1955380 .. 1955580 (-)
RNA-Seq Expression	MS003304
Synteny	MS003304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACTCCTCCCAAAAGATGAGCTACCATGCTGGAGAAGCCAAGGGGCAAGCTGAAGAAAAAGCGAGCAATCTAATGGACAAGGCGAGCAATGCAGCTCAATCCGCCAAAGAAACAATGCAAGAGGCTGGGCAGCAAATGATGGCCAAGGCTCAAGGTGCAGCCGAGGCTATCAAGGATGCCACGGGCCTCAACAAA

mRNA sequence

ATGGCAGACTCCTCCCAAAAGATGAGCTACCATGCTGGAGAAGCCAAGGGGCAAGCTGAAGAAAAAGCGAGCAATCTAATGGACAAGGCGAGCAATGCAGCTCAATCCGCCAAAGAAACAATGCAAGAGGCTGGGCAGCAAATGATGGCCAAGGCTCAAGGTGCAGCCGAGGCTATCAAGGATGCCACGGGCCTCAACAAA

Coding sequence (CDS)

ATGGCAGACTCCTCCCAAAAGATGAGCTACCATGCTGGAGAAGCCAAGGGGCAAGCTGAAGAAAAAGCGAGCAATCTAATGGACAAGGCGAGCAATGCAGCTCAATCCGCCAAAGAAACAATGCAAGAGGCTGGGCAGCAAATGATGGCCAAGGCTCAAGGTGCAGCCGAGGCTATCAAGGATGCCACGGGCCTCAACAAA

Protein sequence

MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDATGLNK

Homology

[Close]

BLAST of MS003304 vs. NCBI nr
Match: XP_022134444.1 (stress-induced protein KIN2-like isoform X3 [Momordica charantia] >XP_022134445.1 stress-induced protein KIN2-like isoform X3 [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGA EAIK
Sbjct: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAVEAIK 60

Query: 61 DATGLNK 68
          DATGLNK
Sbjct: 61 DATGLNK 67

[Close]

BLAST of MS003304 vs. NCBI nr
Match: XP_008459448.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0039403.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa] >TYK00591.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MADSSQKMSY AGEAKGQAEEKASNLMDKASNAAQSAKET+QEAGQQMMAKAQGAA+AIK
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of MS003304 vs. NCBI nr
Match: XP_022134443.1 (stress-induced protein KIN2-like isoform X2 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 4  SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDAT 63
          SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGA EAIKDAT
Sbjct: 12 SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAVEAIKDAT 71

Query: 64 GLNK 68
          GLNK
Sbjct: 72 GLNK 75

[Close]

BLAST of MS003304 vs. NCBI nr
Match: XP_038891164.1 (uncharacterized protein LOC120080541 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MADSSQKMSYH GEAKGQAEEKA+NLM+KASNAAQS KET+QEAGQQMMAKAQGAAEAIK
Sbjct: 1  MADSSQKMSYHVGEAKGQAEEKATNLMEKASNAAQSTKETIQEAGQQMMAKAQGAAEAIK 60

Query: 61 DATGLNK 68
          DATGLNK
Sbjct: 61 DATGLNK 67

[Close]

BLAST of MS003304 vs. NCBI nr
Match: XP_022134441.1 (stress-induced protein KIN2-like isoform X1 [Momordica charantia] >XP_022134442.1 stress-induced protein KIN2-like isoform X1 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 4   SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDAT 63
           SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGA EAIKDAT
Sbjct: 57  SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAVEAIKDAT 116

Query: 64  GLNK 68
           GLNK
Sbjct: 117 GLNK 120

[Close]

BLAST of MS003304 vs. ExPASy Swiss-Prot
Match: P31169 (Stress-induced protein KIN2 OS=Arabidopsis thaliana OX=3702 GN=KIN2 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.5e-05
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 5  SQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDATG 64
          + K ++ AG+A G+AEEK++ L+DKA +AA +A  + Q+AG+ +   A G    +KD TG
Sbjct: 4  TNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTG 63

Query: 65 LNK 68
          LNK
Sbjct: 64 LNK 66

[Close]

BLAST of MS003304 vs. ExPASy Swiss-Prot
Match: Q94JF2 (Late embryogenesis abundant protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=LEA14 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MA   ++ SYHAGE K +AEEK   +M  A   A+ AK+T  +A  + M +  GA EA K
Sbjct: 1  MASQQERASYHAGETKARAEEKTGRMMGTAQEKAREAKDTASDAAGRAMGRGHGAKEATK 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of MS003304 vs. ExPASy Swiss-Prot
Match: P18612 (Stress-induced protein KIN1 OS=Arabidopsis thaliana OX=3702 GN=KIN1 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-04
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 5  SQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDATG 64
          + K ++ AG+  G+AEEK++ L+DKA +AA  A    Q+AG+ +   A G    +KD TG
Sbjct: 4  TNKNAFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKDKTG 63

Query: 65 LNK 68
          LNK
Sbjct: 64 LNK 66

[Close]

BLAST of MS003304 vs. ExPASy TrEMBL
Match: A0A6J1BYR6 (stress-induced protein KIN2-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111006689 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGA EAIK
Sbjct: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAVEAIK 60

Query: 61 DATGLNK 68
          DATGLNK
Sbjct: 61 DATGLNK 67

[Close]

BLAST of MS003304 vs. ExPASy TrEMBL
Match: A0A5A7T8W6 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002080 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.0e-22
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MADSSQKMSY AGEAKGQAEEKASNLMDKASNAAQSAKET+QEAGQQMMAKAQGAA+AIK
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of MS003304 vs. ExPASy TrEMBL
Match: A0A1S3CAA8 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498579 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.0e-22
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          MADSSQKMSY AGEAKGQAEEKASNLMDKASNAAQSAKET+QEAGQQMMAKAQGAA+AIK
Sbjct: 1  MADSSQKMSYQAGEAKGQAEEKASNLMDKASNAAQSAKETIQEAGQQMMAKAQGAADAIK 60

Query: 61 DATGLNK 68
          DATG+NK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of MS003304 vs. ExPASy TrEMBL
Match: A0A6J1BXT6 (stress-induced protein KIN2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006689 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 4   SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDAT 63
           SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGA EAIKDAT
Sbjct: 57  SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAVEAIKDAT 116

Query: 64  GLNK 68
           GLNK
Sbjct: 117 GLNK 120

[Close]

BLAST of MS003304 vs. ExPASy TrEMBL
Match: A0A6J1C204 (stress-induced protein KIN2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006689 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 4  SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDAT 63
          SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGA EAIKDAT
Sbjct: 12 SSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAVEAIKDAT 71

Query: 64 GLNK 68
          GLNK
Sbjct: 72 GLNK 75

[Close]

BLAST of MS003304 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-17
Identity = 45/67 (67.16%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          M+++SQ MS++AG+AKGQ +EKASNL+DKASNAAQSAKE++QE GQQ+  KAQGA+E IK
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

Query: 61 DATGLNK 68
          + TG++K
Sbjct: 61 EKTGISK 67

[Close]

BLAST of MS003304 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MADSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIK 60
          M+ +SQ +S+ AG+AKGQ +EKAS +MDKASNAAQSAKE+++E GQQ+  KAQGA E++K
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 DATGLNK 68
          +ATG+NK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of MS003304 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 3  DSSQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDA 62
          D+ Q  SY AG+A GQ +EKA  +MDKA +AA SA++++Q+ GQQM  KAQGAA+ +KD 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 TGLNK 68
          TG+NK
Sbjct: 62 TGMNK 66

[Close]

BLAST of MS003304 vs. TAIR 10
Match: AT5G15970.1 (stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) )

HSP 1 Score: 47.4 bits (111), Expect = 5.4e-06
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 5  SQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDATG 64
          + K ++ AG+A G+AEEK++ L+DKA +AA +A  + Q+AG+ +   A G    +KD TG
Sbjct: 4  TNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTG 63

Query: 65 LNK 68
          LNK
Sbjct: 64 LNK 66

[Close]

BLAST of MS003304 vs. TAIR 10
Match: AT5G15960.1 (stress-responsive protein (KIN1) / stress-induced protein (KIN1) )

HSP 1 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 5  SQKMSYHAGEAKGQAEEKASNLMDKASNAAQSAKETMQEAGQQMMAKAQGAAEAIKDATG 64
          + K ++ AG+  G+AEEK++ L+DKA +AA  A    Q+AG+ +   A G    +KD TG
Sbjct: 4  TNKNAFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKDKTG 63

Query: 65 LNK 68
          LNK
Sbjct: 64 LNK 66

The following BLAST results are available for this feature:

BLAST of MS003304 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134444.1	4.5e-23	98.51	stress-induced protein KIN2-like isoform X3 [Momordica charantia] >XP_022134445....	[more]
XP_008459448.1	1.5e-21	94.03	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0039403.1 stress-...	[more]
XP_022134443.1	2.5e-21	98.44	stress-induced protein KIN2-like isoform X2 [Momordica charantia]	[more]
XP_038891164.1	2.5e-21	92.54	uncharacterized protein LOC120080541 [Benincasa hispida]	[more]
XP_022134441.1	2.5e-21	98.44	stress-induced protein KIN2-like isoform X1 [Momordica charantia] >XP_022134442....	[more]

BLAST of MS003304 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31169	7.5e-05	44.44	Stress-induced protein KIN2 OS=Arabidopsis thaliana OX=3702 GN=KIN2 PE=2 SV=1	[more]
Q94JF2	2.9e-04	42.62	Late embryogenesis abundant protein 14 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P18612	4.9e-04	42.86	Stress-induced protein KIN1 OS=Arabidopsis thaliana OX=3702 GN=KIN1 PE=2 SV=1	[more]

BLAST of MS003304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYR6	2.2e-23	98.51	stress-induced protein KIN2-like isoform X3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7T8W6	7.0e-22	94.03	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CAA8	7.0e-22	94.03	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498579 PE=4 SV...	[more]
A0A6J1BXT6	1.2e-21	98.44	stress-induced protein KIN2-like isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1C204	1.2e-21	98.44	stress-induced protein KIN2-like isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of MS003304 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53820.1	4.0e-17	67.16	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	2.0e-16	64.18	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	5.9e-13	56.92	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	5.4e-06	44.44	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsi...	[more]
AT5G15960.1	3.5e-05	42.86	stress-responsive protein (KIN1) / stress-induced protein (KIN1)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..47
None	No IPR available	GENE3D	6.10.140.1430		coord: 1..48 e-value: 4.0E-6 score: 29.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	PANTHER	PTHR34191:SF23	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 1..67
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003304.1	MS003304.1	mRNA