Homology
BLAST of MS003295 vs. NCBI nr
Match:
XP_022134053.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica charantia])
HSP 1 Score: 1399.0 bits (3620), Expect = 0.0e+00
Identity = 691/693 (99.71%), Postives = 691/693 (99.71%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSV SSLPKF
Sbjct: 34 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVFSSLPKF 93
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
GTWEM IGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD
Sbjct: 94 GTWEMDIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 153
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE
Sbjct: 154 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 213
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM
Sbjct: 214 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 273
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND
Sbjct: 274 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 333
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT
Sbjct: 334 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 393
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM
Sbjct: 394 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 453
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL
Sbjct: 454 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 513
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 514 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 573
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 574 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 633
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW
Sbjct: 634 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 693
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLAACMNLTEALRSFSPETFISHIP
Sbjct: 694 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 726
BLAST of MS003295 vs. NCBI nr
Match:
XP_022993982.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita maxima])
HSP 1 Score: 1251.5 bits (3237), Expect = 0.0e+00
Identity = 614/693 (88.60%), Postives = 649/693 (93.65%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAKQAIS+NR+F LDWH SRSHGV+GR +ES+ EK +S VLSSLPKF
Sbjct: 32 MISTSMWKTIAKQAISKNRQFHLDWHCLSRSHGVMGRLNESIIREKLISDKFVLSSLPKF 91
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
G E+ IGR+E+LSQ+ YGSRFCFGS+G RIGLNG CPKG+SSVAEAVSSTDVDED+S+D
Sbjct: 92 GISELGIGRSEVLSQDDYGSRFCFGSMGVRIGLNGSCPKGYSSVAEAVSSTDVDEDSSID 151
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
+EIQELLQEM KEEKRQV+ RRR K KGMG+ KYQMLKRRQV IETEAW+ AVKEYKE
Sbjct: 152 EEIQELLQEMRKEEKRQVQRRRRGLKRVKGMGEEKYQMLKRRQVAIETEAWKQAVKEYKE 211
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI KEQELIR GKNRTAYAPYFD+L ADMM
Sbjct: 212 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRTAYAPYFDQLSADMM 271
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SV+TMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQE+RIH FLEKMKKKKHDKD ENND
Sbjct: 272 SVVTMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEVRIHRFLEKMKKKKHDKDNENND 331
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDS +KEQE+LRKKVTNLIK QKLPAVR IVKGADDSKPWG DAKAKVGSRLIELLTQT
Sbjct: 332 KPDSQLKEQERLRKKVTNLIKMQKLPAVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQT 391
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPPADQLADGPPDIRPAFRHSFR VMKEANKNSSRRYGVIECDPLVVKGLERTARHM
Sbjct: 392 AYIQPPADQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 451
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSF+MRT GA QQR+AVKRTPKQQLTPVFEALDTL
Sbjct: 452 VIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTL 511
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINK+ILS+VDRIWT GG LADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 512 GNTKWRINKKILSIVDRIWTSGGCLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 571
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
EN+ERHSQRCDIELKLAVARKMKDEEGFY+PHN+DFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 572 ENVERHSQRCDIELKLAVARKMKDEEGFYFPHNIDFRGRAYPMHPYLNHLGSDLCRGILE 631
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPLRKSGL WLKIHLANLFAGGVDKLSHDGR+TFI++H+EDIFDSADRPLEGRRWW
Sbjct: 632 FAEGRPLRKSGLRWLKIHLANLFAGGVDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWW 691
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLA CMNLTEALRS SPET ISHIP
Sbjct: 692 LNAEDPFQFLAGCMNLTEALRSSSPETVISHIP 724
BLAST of MS003295 vs. NCBI nr
Match:
XP_023551171.1 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1250.3 bits (3234), Expect = 0.0e+00
Identity = 614/693 (88.60%), Postives = 645/693 (93.07%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAKQAIS+NR+F LDWH SRSHGV+GR +ES+ EK +S VLSSLPKF
Sbjct: 1 MISTSMWKTIAKQAISKNRQFHLDWHCLSRSHGVMGRLNESIISEKLISDKFVLSSLPKF 60
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
G E+ IGR+E+LSQE YGSRFCFGS+G RIGLNG PKG+SSVAEAVSSTDVDED+S+D
Sbjct: 61 GISELGIGRSEVLSQEDYGSRFCFGSMGVRIGLNGSFPKGYSSVAEAVSSTDVDEDSSID 120
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
+EIQELLQEM KEEKRQV+ RRRR K KGMG+ KYQMLKRRQV IETEAW+ AVKEYKE
Sbjct: 121 EEIQELLQEMRKEEKRQVQRRRRRLKRVKGMGEQKYQMLKRRQVAIETEAWKQAVKEYKE 180
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI KEQELIR GKNR AYAPYFD+L ADMM
Sbjct: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRAAYAPYFDQLSADMM 240
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SV+TMHKL+GLLMMGHEHGNARVVQAAC IGDAIEQE+RIH FLEKMKKKKHDKD ENND
Sbjct: 241 SVVTMHKLIGLLMMGHEHGNARVVQAACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENND 300
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDS +KEQE LRKKVTNLIKKQKLPAVR IVKG DDSKPWG DAKAKVGSRLIELLTQT
Sbjct: 301 KPDSQLKEQEWLRKKVTNLIKKQKLPAVRHIVKGTDDSKPWGPDAKAKVGSRLIELLTQT 360
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPP DQLADGPPDIRPAFRHSFR VMKEANKNSSRRYGVIECDPLVV GLERTARHM
Sbjct: 361 AYIQPPVDQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVNGLERTARHM 420
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSF+MRT GA QQR+AVKRTPKQQLTPVFEALDTL
Sbjct: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTL 480
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINK+ILS+VDRIWT GGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 481 GNTKWRINKKILSIVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
ENMERHSQRCDIELKLAVARKMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILE 600
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPLRKSGL WLKIHLANLFAGGVDKLSHDGRMTFI+NH+EDIFDSADRPLEGRRWW
Sbjct: 601 FAEGRPLRKSGLRWLKIHLANLFAGGVDKLSHDGRMTFIDNHVEDIFDSADRPLEGRRWW 660
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLA CMNLTEALR+ SPET ISHIP
Sbjct: 661 LNAEDPFQFLAGCMNLTEALRNSSPETVISHIP 693
BLAST of MS003295 vs. NCBI nr
Match:
KAG6578529.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 1245.0 bits (3220), Expect = 0.0e+00
Identity = 612/693 (88.31%), Postives = 646/693 (93.22%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAKQAIS+ R+F LDWH SRSHGV+GR +ES+ EK +SG VLSSLPKF
Sbjct: 1 MISTSMWKTIAKQAISKTRQFHLDWHCLSRSHGVMGRLNESIIREKLISGKFVLSSLPKF 60
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
G E+ IGR+E+LSQE YGSRFCFGS+G RIGLNG PKG+SSVAEAVSSTDVDED+S+D
Sbjct: 61 GISELGIGRSEVLSQEDYGSRFCFGSMGVRIGLNGSIPKGYSSVAEAVSSTDVDEDSSID 120
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
+EI+ELLQEM KEEKRQV+ RRRR K KGMG+ KYQMLKRRQV IETEAW+ AVKEYKE
Sbjct: 121 EEIEELLQEMRKEEKRQVQRRRRRLKRVKGMGEQKYQMLKRRQVAIETEAWKQAVKEYKE 180
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI KEQELIR GKNR AYAPYFD+L ADMM
Sbjct: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRAAYAPYFDQLSADMM 240
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SV+TMHKL+GLLMMGHEHGNARVVQAAC IGDAIEQE+RIH FLEKMKKKKHDKD ENND
Sbjct: 241 SVVTMHKLIGLLMMGHEHGNARVVQAACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENND 300
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDS +KEQE LRKKVTNLIKKQKLPAVR IVKGADDSKPWG DAKAKVGSRLIELLTQT
Sbjct: 301 KPDSQLKEQEWLRKKVTNLIKKQKLPAVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQT 360
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPPADQLADGPPDIRPAFRHSFR VMKEANKNSSRRYGVIECDPLVVKGLERTARHM
Sbjct: 361 AYIQPPADQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSF+MRT GA QQR+AVKRTPKQQLTPVFEALDTL
Sbjct: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTL 480
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINK+ILS+VDRIWT GGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 481 GNTKWRINKKILSIVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
EN+ERHSQRCDIELKLAVA KMKDEEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILE
Sbjct: 541 ENVERHSQRCDIELKLAVAHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILE 600
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPL KSGL WLKIHLANLFAGGVDKLSHDGR+TFI++H+EDIFDSADRPLEGRRWW
Sbjct: 601 FAEGRPLGKSGLRWLKIHLANLFAGGVDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWW 660
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLA CMNLTEALRS SPET ISHIP
Sbjct: 661 LNAEDPFQFLAGCMNLTEALRSSSPETVISHIP 693
BLAST of MS003295 vs. NCBI nr
Match:
XP_038890081.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Benincasa hispida])
HSP 1 Score: 1244.2 bits (3218), Expect = 0.0e+00
Identity = 615/694 (88.62%), Postives = 643/694 (92.65%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK +AKQAI RNR+F L WH FS S GVLGRP+ESLF EK +SG+ VLSSLPKF
Sbjct: 32 MISTSMWKTLAKQAICRNRQFHLGWHCFSCSSGVLGRPNESLFREKLISGNFVLSSLPKF 91
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
G+WEM IGRNE+LSQE YGSR CFGS+G RIGLNG C KG+SSVAEAVSSTDVDEDASVD
Sbjct: 92 GSWEMGIGRNEVLSQEDYGSRLCFGSMGARIGLNGSCSKGYSSVAEAVSSTDVDEDASVD 151
Query: 121 DEIQELLQEMTKEEKRQVEYR-RRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYK 180
+EIQELLQEM+KEEKRQV RRR KM KGMG GKYQML+RRQV IETEAWE AVKEYK
Sbjct: 152 NEIQELLQEMSKEEKRQVTCSWRRRMKMVKGMGAGKYQMLRRRQVAIETEAWEQAVKEYK 211
Query: 181 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADM 240
ELLMDMCEQKLAP LPYMKSLFLGWFEPL DAI KEQELIR+GKNRT YAPYFD+LPADM
Sbjct: 212 ELLMDMCEQKLAPTLPYMKSLFLGWFEPLCDAISKEQELIRQGKNRTPYAPYFDQLPADM 271
Query: 241 MSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENN 300
MSVITMHKLMGLLMMGHE GN RVVQAACVIGDAIEQE+RIH FLEK KKK HDKD ENN
Sbjct: 272 MSVITMHKLMGLLMMGHERGNTRVVQAACVIGDAIEQEVRIHKFLEKKKKKTHDKDNENN 331
Query: 301 DKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQ 360
D+PDS +KE E LR+KV+NLIKKQKLPAVRQI+KG DDS+PWGQDAKAKVGSRLIELLTQ
Sbjct: 332 DQPDSQMKEHEGLRQKVSNLIKKQKLPAVRQILKGTDDSRPWGQDAKAKVGSRLIELLTQ 391
Query: 361 TAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARH 420
TAYIQPPADQLADGPPDIRPAFRHS RTVMK+A KNS RRYGVIECDPLVVKGLERTARH
Sbjct: 392 TAYIQPPADQLADGPPDIRPAFRHSLRTVMKKATKNSGRRYGVIECDPLVVKGLERTARH 451
Query: 421 MVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDT 480
+VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQR+AVKR PKQQL PVFEALDT
Sbjct: 452 IVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQREAVKRAPKQQLAPVFEALDT 511
Query: 481 LGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVK 540
LG+TKWRIN +ILSVVDRIWT GGRLADLVDRDDVP PEKPDSEDE LLRKWKWKVKSVK
Sbjct: 512 LGSTKWRINVKILSVVDRIWTSGGRLADLVDRDDVPFPEKPDSEDEVLLRKWKWKVKSVK 571
Query: 541 KENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 600
KENMERHSQRCDIELKLAVA KMKDEEGFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGIL
Sbjct: 572 KENMERHSQRCDIELKLAVAGKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGIL 631
Query: 601 EFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRW 660
EFAEGRPLRKSGL WLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRW
Sbjct: 632 EFAEGRPLRKSGLGWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRW 691
Query: 661 WLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
WLNAEDPFQFLAACMNLTEALRS SPETFISHIP
Sbjct: 692 WLNAEDPFQFLAACMNLTEALRSSSPETFISHIP 725
BLAST of MS003295 vs. ExPASy Swiss-Prot
Match:
Q8VWF8 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT2 PE=2 SV=2)
HSP 1 Score: 951.8 bits (2459), Expect = 4.2e-276
Identity = 487/701 (69.47%), Postives = 570/701 (81.31%), Query Frame = 0
Query: 3 STSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPE--KF-----MSGSSVLS 62
S +W+ I KQ SR + +L + S +R++ LG +S+F + KF +S S+++
Sbjct: 32 SPIMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVM 91
Query: 63 SLPKFGTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAE--AVSSTDV 122
G Y+ +E LS+ + + ++ N C K ++SVAE AVSSTD
Sbjct: 92 GFQNLGE---YLPGDEFLSRPL---------IKNQVNNNFCCRKSYASVAEAVAVSSTDA 151
Query: 123 DEDASVDDEIQELLQEMTKEEKRQVEYRRRRQKM-AKGMGQGKYQMLKRRQVKIETEAWE 182
+ED SV DE+ ELL E+ KEEK+Q +RRR+Q+M GMG KYQ LKRRQVK+ETEAWE
Sbjct: 152 EEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWE 211
Query: 183 LAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYF 242
A KEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLRD I +EQEL +GK++ AYA YF
Sbjct: 212 QAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYF 271
Query: 243 DRLPADMMSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKH 302
+LPADMM+VITMHKLMGLLM G +HG ARVVQAA VIGDAIEQE+RIHNFLEK KK+K
Sbjct: 272 YQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKA 331
Query: 303 DKDGENNDKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSR 362
+KD + D + + +EQEKLRKKVTNL+KKQKL AV QIV+ DDSKPWGQDA+AKVGSR
Sbjct: 332 EKDKQKED-GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSR 391
Query: 363 LIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKG 422
LI+LL QTAYIQPPA+QLA PPDIRPAF HS RTV KE K++SRRYG+I+CD LV KG
Sbjct: 392 LIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKE-TKSASRRYGIIQCDELVFKG 451
Query: 423 LERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTP 482
LERTARHMVIPYMPMLVPPV WTGYDKGGH++LPS+VMRTHGA+QQR+AVKR + QL P
Sbjct: 452 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 511
Query: 483 VFEALDTLGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWK 542
VFEALDTLGNTKWRINKR+LSVVDRIW GGGRLADLVDRDD PLPE+PD+EDE L KW+
Sbjct: 512 VFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWR 571
Query: 543 WKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 602
WKVKSVKKEN ERHSQRCDIELKLAVARKMKDEE F+YPHN+DFRGRAYPMHP+LNHLGS
Sbjct: 572 WKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGS 631
Query: 603 DLCRGILEFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADR 662
D+CRG+LEFAEGRPL +SGL WLKIHLANLFAGGV+KLS +GR+ F ENH++DIFDS+D+
Sbjct: 632 DICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDK 691
Query: 663 PLEGRRWWLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
PLEGRRWWLNAEDPFQ LA C+NL+EA+RS SPET +SHIP
Sbjct: 692 PLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIP 717
BLAST of MS003295 vs. ExPASy Swiss-Prot
Match:
Q8L6J3 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT2-TOM PE=2 SV=2)
HSP 1 Score: 951.4 bits (2458), Expect = 5.5e-276
Identity = 489/704 (69.46%), Postives = 570/704 (80.97%), Query Frame = 0
Query: 3 STSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPE--KF-----MSGSSVLS 62
S +W+ I KQ SR + +L + S +R++ LG +S+F + KF +S S+++
Sbjct: 32 SPIMWRNIIKQLSSRTPQ-KLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVM 91
Query: 63 SLPKFGTW---EMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAE--AVSS 122
G + + ++ R +L +V + FC C K ++SVAE AVSS
Sbjct: 92 GFQNLGEYLPGDEFLSR-PLLKNQVNSNDFC-------------CRKSYASVAEAVAVSS 151
Query: 123 TDVDEDASVDDEIQELLQEMTKEEKRQVEYRRRRQKM-AKGMGQGKYQMLKRRQVKIETE 182
TD +ED SV DE+QELL E+ KEEK+Q +RRR+Q+M GMG KYQ LKRRQVK+ETE
Sbjct: 152 TDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETE 211
Query: 183 AWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYA 242
AWE A KEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLRD I +EQEL +GK++ AYA
Sbjct: 212 AWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYA 271
Query: 243 PYFDRLPADMMSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKK 302
Y +LPADMM+VITMHKLMGLLM G +HG ARVVQAA VIGDAIEQE+RIHNFLEK KK
Sbjct: 272 KYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKK 331
Query: 303 KKHDKDGENNDKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKV 362
+K +KD + D + + +EQEKLRKKVTNL+KKQKL AV QIV+ DDSKPWGQDAKAKV
Sbjct: 332 QKAEKDKQKED-GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKV 391
Query: 363 GSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLV 422
GSRLIELL QTAYIQPPA+QLA PPDIRPAF HS RTV KE K++SRRYG+I+CD LV
Sbjct: 392 GSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKE-TKSASRRYGIIQCDELV 451
Query: 423 VKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQ 482
KGLERTARHMVIPYMPMLVPPV WTGYDKGGH++LPS+VMRTHGA+QQR+AVKR + Q
Sbjct: 452 FKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQ 511
Query: 483 LTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLR 542
L PVFEALDTLG+TKWRINKR+LSV+DRIW GGGRLADLVDRDD PLPE+PD+EDE L
Sbjct: 512 LQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRT 571
Query: 543 KWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 602
KW+WKVKSVKKEN ERHSQRCDIELKLAVARKMKDEEGF+YPHN+DFRGRAYPMHP+LNH
Sbjct: 572 KWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNH 631
Query: 603 LGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDS 662
LGSD+CRG+L FAEGRPL +SGL WLKIHLANLFAGGV+KLS +GR+ F ENH++DIFDS
Sbjct: 632 LGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDS 691
Query: 663 ADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
AD+PLEGRRWWLNAEDPFQ LA C+NL+EA+RS SPET ISHIP
Sbjct: 692 ADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIP 718
BLAST of MS003295 vs. ExPASy Swiss-Prot
Match:
Q93Y94 (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT1 PE=2 SV=1)
HSP 1 Score: 868.2 bits (2242), Expect = 6.1e-251
Identity = 458/714 (64.15%), Postives = 544/714 (76.19%), Query Frame = 0
Query: 6 VWKIIAKQAISRNRKFR-------LDWHSFSRSHGVLGRPHESLF------PEKFMSGSS 65
+W+ I+KQA S RKFR L + +S S G RP + L P +S +S
Sbjct: 1 MWRYISKQAYS--RKFRNSHDSALLGFSQYSSSFGKT-RPLQCLCEESTTNPNLGLSQNS 60
Query: 66 VLSSLPK-----FGTWE-------MYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKG 125
+ S + + G E + + +N + S R C G G+ G G +
Sbjct: 61 IFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVC-GKRGS--GSLGFL-RS 120
Query: 126 FSSVAEAVSSTDVDEDASVDDEIQELLQEMTKE-EKRQVEYRRRRQKMAKGMGQGKYQML 185
+ S AEA++ST +ED DEIQEL++EM KE E + + ++ K GMG GKY +L
Sbjct: 121 YGSAAEAIASTS-EEDI---DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLL 180
Query: 186 KRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELI 245
+RRQ+K+ETEAWE A KEY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI EQ+L
Sbjct: 181 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 240
Query: 246 REGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIR 305
EGKNR AYAP+FD+LPA+MM+VITMHKLMGLLM G G+ARVVQAA IG+AIE E R
Sbjct: 241 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEAR 300
Query: 306 IHNFLEKMKKKKHDKDGENNDKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSK 365
IH FLEK KK + G+ D P ++KE+E++RKKV L+KKQKL VR+IVK DD K
Sbjct: 301 IHRFLEK-TKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEK 360
Query: 366 PWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRR 425
PWGQD KVG RLI++L +TAYIQPP DQL D PPDIRPAF H+ +TV SRR
Sbjct: 361 PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ETMKGSRR 420
Query: 426 YGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQR 485
YGVI+CDPLV KGL++TARHMVIPYMPMLVPP +W GYDKG ++FLPS++MRTHGAKQQR
Sbjct: 421 YGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQR 480
Query: 486 DAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEK 545
+AVKR PK+QL PVF+ALDTLGNTKWR+N+++L +VDRIW GGRLADLVDR+DVPLPE+
Sbjct: 481 EAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEE 540
Query: 546 PDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGR 605
PD+EDE +RKWKWKVK VKKEN ERHSQRCDIELKLAVARKMKDE+GFYYPHNLDFRGR
Sbjct: 541 PDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGR 600
Query: 606 AYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFI 665
AYPMHPYLNHLGSDLCRGILEFAEGRPL KSGL WLKIHLAN++ GGVDKLS++GR+ F
Sbjct: 601 AYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFS 660
Query: 666 ENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
ENH+EDIFDSA+RPLEG+RWWL AEDPFQ LA C+N+ EALRS SPET IS++P
Sbjct: 661 ENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
BLAST of MS003295 vs. ExPASy Swiss-Prot
Match:
Q8L6J5 (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT1-TOM PE=2 SV=2)
HSP 1 Score: 867.1 bits (2239), Expect = 1.4e-250
Identity = 459/714 (64.29%), Postives = 540/714 (75.63%), Query Frame = 0
Query: 6 VWKIIAKQAISRNRKFR-------LDWHSFSRSHGVLGRPHESL------FPEKFMSGSS 65
+W+ I+K A S RKFR L + +S S G RP + L P +S +S
Sbjct: 1 MWRYISKHAYS--RKFRNSHDSALLGFSQYSSSFGKT-RPLQCLCEESTTHPNLGLSQNS 60
Query: 66 VLSSLPK-----FGTWE-------MYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKG 125
+ S + + G E + + +N S R C G G+ G G +
Sbjct: 61 IFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRIC-GKRGS--GSLGRL-RS 120
Query: 126 FSSVAEAVSSTDVDEDASVDDEIQELLQEMTKE-EKRQVEYRRRRQKMAKGMGQGKYQML 185
+ S AEA+ ST +ED DEIQEL++EM KE E + + ++ K GMG GKY L
Sbjct: 121 YGSAAEAIVSTS-EEDI---DEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFL 180
Query: 186 KRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELI 245
+RRQ+K+ETEAWE A KEY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI EQ+L
Sbjct: 181 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 240
Query: 246 REGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIR 305
EGKNR AYAP+FD+LPA+MM+VITMHKLMGLLM G G+ARVVQAA IG+AIE E R
Sbjct: 241 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEAR 300
Query: 306 IHNFLEKMKKKKHDKDGENNDKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSK 365
IH FLEK KK + G+ + P ++KE+E+LRKKV L+KKQKL VR+IVK DD K
Sbjct: 301 IHRFLEK-TKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEK 360
Query: 366 PWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRR 425
PWGQD KVG RLI++L +TAYIQPP DQL DGPPDIRPAF H+ +TV SRR
Sbjct: 361 PWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV---ETMKGSRR 420
Query: 426 YGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQR 485
YGVI+CDPLV KGL++TARHMVIPYMPMLVPP +W GYDKGG++FLPS++MRTHGAKQQR
Sbjct: 421 YGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQR 480
Query: 486 DAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEK 545
+AVKR PK+QL PVF+ALDTLGNTKWR+N+++L +VDRIW GGRLADLVDR+DVPLPE
Sbjct: 481 EAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEA 540
Query: 546 PDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGR 605
PD+EDE +RKWKWKVK VKKEN ERHSQRCDIELKLAVARKMKDE+GFYYPHNLDFRGR
Sbjct: 541 PDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGR 600
Query: 606 AYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFI 665
AYPMHPYLNHLGSDLCRGILEFAEGRPL SGL WLKIHLAN++ GGVDKLS++GR+ F
Sbjct: 601 AYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFS 660
Query: 666 ENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
ENHLEDIFDSA+RPLEG+RWWL AEDPFQ LA C+N+ EALRS SPET IS++P
Sbjct: 661 ENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
BLAST of MS003295 vs. ExPASy Swiss-Prot
Match:
Q9LFV6 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPOT2 PE=1 SV=1)
HSP 1 Score: 826.2 bits (2133), Expect = 2.7e-238
Identity = 437/693 (63.06%), Postives = 526/693 (75.90%), Query Frame = 0
Query: 3 STSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKFGT 62
S +W+ IAKQAISR+ RL+ S +R G+L ES+F + VL S
Sbjct: 37 SFPMWRNIAKQAISRSAA-RLNVSSQTR--GLLVSSPESIFSKNLSFRFPVLGSPCHGKG 96
Query: 63 WEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVA-EAVSSTDVDEDASVDD 122
+ G +E S C L+G +G++SVA E V STDV+E+ VD
Sbjct: 97 FRCLSGITR--REEFSKSERC---------LSGTLARGYTSVAEEEVLSTDVEEEPEVD- 156
Query: 123 EIQELLQEMTKEEKRQVEYRRRRQKMAK-GMGQGKYQMLKRRQVKIETEAWELAVKEYKE 182
ELL+EM KE+KR+ R +K + GMG+ K+Q L RRQVKIETE WE A EY E
Sbjct: 157 ---ELLKEMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYME 216
Query: 183 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 242
LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI K+QEL R GK++ YA Y D+LPAD +
Sbjct: 217 LLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKI 276
Query: 243 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 302
SVITMHKLMG LM G ++G +VV AAC +GDAIEQEIRI FL+K KKK D +
Sbjct: 277 SVITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDK-KKKGDDNEESGGV 336
Query: 303 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 362
+ ++ +KEQ+KLRKKV LIKKQKL AVR+I++ D +KPW D +AKVGSRLIELL +T
Sbjct: 337 ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRT 396
Query: 363 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 422
AYIQ PADQ + PD+RPAF H+F+ + + + NS R+YGVIECDPLV KGLE++ R+
Sbjct: 397 AYIQSPADQQDNDLPDVRPAFVHTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYA 456
Query: 423 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 482
V+PYMPMLVPP+ W+GYDKG ++FL S++M+THGAKQQR+A+K PK QL PVFEALDTL
Sbjct: 457 VMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTL 516
Query: 483 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 542
G+TKWR+NKR+L+VVDRIW+ GG +AD+VDR DVPLPEKPD+EDE +L+KWKW+VKS KK
Sbjct: 517 GSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKK 576
Query: 543 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 602
N ERHSQRCD ELKL+VARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LE
Sbjct: 577 VNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLE 636
Query: 603 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 662
FAEGRP+ SGL WLKIHLANL+AGGVDKLS DGR+ F ENHL+DIFDSADRPLEG RWW
Sbjct: 637 FAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWW 696
Query: 663 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
L AEDPFQ LA C++LTEALRS SPET +SHIP
Sbjct: 697 LQAEDPFQCLAVCISLTEALRSPSPETVLSHIP 708
BLAST of MS003295 vs. ExPASy TrEMBL
Match:
A0A6J1C0Y4 (DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111006419 PE=3 SV=1)
HSP 1 Score: 1399.0 bits (3620), Expect = 0.0e+00
Identity = 691/693 (99.71%), Postives = 691/693 (99.71%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSV SSLPKF
Sbjct: 34 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVFSSLPKF 93
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
GTWEM IGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD
Sbjct: 94 GTWEMDIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 153
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE
Sbjct: 154 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 213
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM
Sbjct: 214 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 273
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND
Sbjct: 274 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 333
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT
Sbjct: 334 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 393
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM
Sbjct: 394 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 453
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL
Sbjct: 454 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 513
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 514 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 573
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 574 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 633
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW
Sbjct: 634 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 693
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLAACMNLTEALRSFSPETFISHIP
Sbjct: 694 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 726
BLAST of MS003295 vs. ExPASy TrEMBL
Match:
A0A6J1JUF5 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489816 PE=3 SV=1)
HSP 1 Score: 1251.5 bits (3237), Expect = 0.0e+00
Identity = 614/693 (88.60%), Postives = 649/693 (93.65%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAKQAIS+NR+F LDWH SRSHGV+GR +ES+ EK +S VLSSLPKF
Sbjct: 32 MISTSMWKTIAKQAISKNRQFHLDWHCLSRSHGVMGRLNESIIREKLISDKFVLSSLPKF 91
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
G E+ IGR+E+LSQ+ YGSRFCFGS+G RIGLNG CPKG+SSVAEAVSSTDVDED+S+D
Sbjct: 92 GISELGIGRSEVLSQDDYGSRFCFGSMGVRIGLNGSCPKGYSSVAEAVSSTDVDEDSSID 151
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
+EIQELLQEM KEEKRQV+ RRR K KGMG+ KYQMLKRRQV IETEAW+ AVKEYKE
Sbjct: 152 EEIQELLQEMRKEEKRQVQRRRRGLKRVKGMGEEKYQMLKRRQVAIETEAWKQAVKEYKE 211
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI KEQELIR GKNRTAYAPYFD+L ADMM
Sbjct: 212 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRTAYAPYFDQLSADMM 271
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SV+TMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQE+RIH FLEKMKKKKHDKD ENND
Sbjct: 272 SVVTMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEVRIHRFLEKMKKKKHDKDNENND 331
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDS +KEQE+LRKKVTNLIK QKLPAVR IVKGADDSKPWG DAKAKVGSRLIELLTQT
Sbjct: 332 KPDSQLKEQERLRKKVTNLIKMQKLPAVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQT 391
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPPADQLADGPPDIRPAFRHSFR VMKEANKNSSRRYGVIECDPLVVKGLERTARHM
Sbjct: 392 AYIQPPADQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 451
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSF+MRT GA QQR+AVKRTPKQQLTPVFEALDTL
Sbjct: 452 VIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTL 511
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINK+ILS+VDRIWT GG LADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 512 GNTKWRINKKILSIVDRIWTSGGCLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 571
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
EN+ERHSQRCDIELKLAVARKMKDEEGFY+PHN+DFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 572 ENVERHSQRCDIELKLAVARKMKDEEGFYFPHNIDFRGRAYPMHPYLNHLGSDLCRGILE 631
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPLRKSGL WLKIHLANLFAGGVDKLSHDGR+TFI++H+EDIFDSADRPLEGRRWW
Sbjct: 632 FAEGRPLRKSGLRWLKIHLANLFAGGVDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWW 691
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLA CMNLTEALRS SPET ISHIP
Sbjct: 692 LNAEDPFQFLAGCMNLTEALRSSSPETVISHIP 724
BLAST of MS003295 vs. ExPASy TrEMBL
Match:
A0A6J1FHA8 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111445458 PE=3 SV=1)
HSP 1 Score: 1242.6 bits (3214), Expect = 0.0e+00
Identity = 612/693 (88.31%), Postives = 645/693 (93.07%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAKQAIS+NR+F LDWH SRSHGV+GR +ES+ EK +S VLSSLPKF
Sbjct: 32 MISTSMWKTIAKQAISKNRQFHLDWHCLSRSHGVMGRLNESIIREKLISDKFVLSSLPKF 91
Query: 61 GTWEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASVD 120
G E+ IGR+E+LSQE YGSRFCFGS+G RIGLNG PKG+SSVAEAVSSTDVDED+S D
Sbjct: 92 GISELGIGRSEVLSQEDYGSRFCFGSMGVRIGLNGSIPKGYSSVAEAVSSTDVDEDSSSD 151
Query: 121 DEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYKE 180
+EIQELLQEM KEEKRQV+ RRRR K KGMG+ KYQMLKRRQV IETEAW+ AVKEYKE
Sbjct: 152 EEIQELLQEMRKEEKRQVQRRRRRLKWVKGMGEQKYQMLKRRQVAIETEAWKQAVKEYKE 211
Query: 181 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 240
LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAI KEQELIR GKNR AYAPYFD+L ADMM
Sbjct: 212 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAISKEQELIRIGKNRAAYAPYFDQLSADMM 271
Query: 241 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 300
SV+TMHKL+GLLMMGHEHGNARVVQAAC IGDAIEQE+RIH FLEKMKKKKHDKD ENND
Sbjct: 272 SVVTMHKLIGLLMMGHEHGNARVVQAACAIGDAIEQEVRIHRFLEKMKKKKHDKDNENND 331
Query: 301 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 360
KPDS +KEQE LRKKVTNLIKKQKLPAVR IVKGADDSKPWG DAKAKVGSRLIELLTQT
Sbjct: 332 KPDSQLKEQEWLRKKVTNLIKKQKLPAVRHIVKGADDSKPWGPDAKAKVGSRLIELLTQT 391
Query: 361 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 420
AYIQPPADQLADGPPDIRPAFRHSFR VMKEANKNSSRRYGVIECDPLVVKGLE+TARHM
Sbjct: 392 AYIQPPADQLADGPPDIRPAFRHSFRIVMKEANKNSSRRYGVIECDPLVVKGLEKTARHM 451
Query: 421 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 480
VIPYMPMLVPPVNWTGYDKGGHIFLPSF+MRT GA QQR+AVKRTPKQQLTPVFEALDTL
Sbjct: 452 VIPYMPMLVPPVNWTGYDKGGHIFLPSFIMRTRGANQQREAVKRTPKQQLTPVFEALDTL 511
Query: 481 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 540
GNTKWRINK+ILS+VDRIWT GGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK
Sbjct: 512 GNTKWRINKKILSIVDRIWTSGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 571
Query: 541 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 600
EN+ERHSQRCDIELKLAVA KMKDEEGFYYPHNLDFRGRAYPMHP+LNHLGSDLCRGILE
Sbjct: 572 ENVERHSQRCDIELKLAVAHKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILE 631
Query: 601 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 660
FAEGRPL KSGL WLKIHLANLFAGGVDKLSHDGR+TFI++H+EDIFDSADRPLEGRRWW
Sbjct: 632 FAEGRPLGKSGLRWLKIHLANLFAGGVDKLSHDGRITFIDDHVEDIFDSADRPLEGRRWW 691
Query: 661 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
LNAEDPFQFLA CMNLTEALRS SPET ISHIP
Sbjct: 692 LNAEDPFQFLAGCMNLTEALRSSSPETVISHIP 724
BLAST of MS003295 vs. ExPASy TrEMBL
Match:
A0A0A0KXM5 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G642180 PE=3 SV=1)
HSP 1 Score: 1098.6 bits (2840), Expect = 0.0e+00
Identity = 548/695 (78.85%), Postives = 606/695 (87.19%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAK+ I RNR+F DW SR +GVLGRP+ESLF +K +SG+ V SSLPKF
Sbjct: 1 MISTSMWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKF 60
Query: 61 GTWEMYIGRNEILSQE-VYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASV 120
G++EM +GR+EILSQE Y SRFCFGS+G RIGLNG+CPKG+SSVAEAVSSTDVDEDASV
Sbjct: 61 GSFEMGVGRSEILSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASV 120
Query: 121 DDEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYK 180
D ++QE +QEM+KEEK R K KGMGQ KY ML+RRQV IE EAWE A KEY+
Sbjct: 121 DGKVQESVQEMSKEEK--------RLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYR 180
Query: 181 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGK-NRTAYAPYFDRLPAD 240
ELL+DMC+QKLAPNLPY+KSLFLGWFEP +DAIIKEQELI+EGK +R YAPYF +LPAD
Sbjct: 181 ELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPAD 240
Query: 241 MMSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGEN 300
MSVITMHKLMGLLM G EHG+ RVVQAAC IGDAIEQE+RIH FLEK K++ H+KD EN
Sbjct: 241 KMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNEN 300
Query: 301 NDKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLT 360
ND+PD KEQE+LRKKVTNLIKK+K A QI K ADDS+PWG++ KAKVG+RLIELL
Sbjct: 301 NDQPDIERKEQERLRKKVTNLIKKKKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLI 360
Query: 361 QTAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTAR 420
QTAYIQPPADQLADGPPD RPAF HS +T +K+ N R GVIECDPLVVKGL+ TAR
Sbjct: 361 QTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGT-NFMGRLGVIECDPLVVKGLDWTAR 420
Query: 421 HMVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALD 480
+VIPYMPML+PPV W GYDKGGHI LPSF MRTHGAKQQRDA KRTPKQQLTPVFEALD
Sbjct: 421 QIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALD 480
Query: 481 TLGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSV 540
TLGNTKWRINKRIL+VV+RIWT GG LA LVD+DDVPLPEKPD+EDETL++KWKW+V+SV
Sbjct: 481 TLGNTKWRINKRILNVVERIWTSGGHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSV 540
Query: 541 KKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 600
KKENMERHSQRCDIELKL VARKMKDEEGFYYPHN+DFRGRAYPMHP+LNHLGSDLCRGI
Sbjct: 541 KKENMERHSQRCDIELKLTVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGI 600
Query: 601 LEFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRR 660
LEFAEGR LRKSGL WLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEG R
Sbjct: 601 LEFAEGRSLRKSGLIWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGR 660
Query: 661 WWLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
WW+NAEDPFQFLA CMNLTEALRS SPET+ISHIP
Sbjct: 661 WWMNAEDPFQFLAGCMNLTEALRSSSPETYISHIP 686
BLAST of MS003295 vs. ExPASy TrEMBL
Match:
A0A1S3CBC4 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103498556 PE=3 SV=1)
HSP 1 Score: 1097.4 bits (2837), Expect = 0.0e+00
Identity = 542/695 (77.99%), Postives = 607/695 (87.34%), Query Frame = 0
Query: 1 MISTSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKF 60
MISTS+WK IAK+ I RNR+F DW FSR +GVLGRP+ESLF +K +SG+ V SSLPKF
Sbjct: 1 MISTSMWKTIAKRGICRNRQFHPDWRCFSRFNGVLGRPNESLFRDKLISGNLVPSSLPKF 60
Query: 61 GTWEMYIGRNEILSQE-VYGSRFCFGSVGTRIGLNGMCPKGFSSVAEAVSSTDVDEDASV 120
G ++M +GRN+ILSQE Y SRFCFGS+G RIGLNG+CPKG+SSVAEAVSSTDVDEDAS+
Sbjct: 61 GFFQMGVGRNQILSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASL 120
Query: 121 DDEIQELLQEMTKEEKRQVEYRRRRQKMAKGMGQGKYQMLKRRQVKIETEAWELAVKEYK 180
D E+QELLQEM+KEE R K KGM KY ML+RRQV +E EAWE AVKEYK
Sbjct: 121 DGEVQELLQEMSKEE--------TRLKTVKGMPHSKYLMLRRRQVTVEAEAWEKAVKEYK 180
Query: 181 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKN-RTAYAPYFDRLPAD 240
ELL DMC+QKLAPNLPY+KSLFLGWFEP ++AI KEQELI++GK R YAPYF +LPAD
Sbjct: 181 ELLEDMCKQKLAPNLPYVKSLFLGWFEPFQEAINKEQELIQKGKKPRAPYAPYFVQLPAD 240
Query: 241 MMSVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGEN 300
MSVITMHKLMG+LM G EHGN +VV AAC IGDAIEQE+RIH FLEK K+KKH+K+ EN
Sbjct: 241 KMSVITMHKLMGMLMKGCEHGNIKVVVAACAIGDAIEQEVRIHKFLEKKKEKKHNKNNEN 300
Query: 301 NDKPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLT 360
N +PDS +KEQE+LRK V NLIKK+K AV QI KG DDS+PWG++AKAKVG+RLIELL
Sbjct: 301 NYQPDSQVKEQERLRKTVANLIKKKKHQAVGQIAKGTDDSRPWGREAKAKVGARLIELLI 360
Query: 361 QTAYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTAR 420
QTAYIQPPADQLADGPPDIRPAF HS +TV+ + NS R GVIECDPLV+KGL+RTAR
Sbjct: 361 QTAYIQPPADQLADGPPDIRPAFWHSLKTVVTD---NSVGRLGVIECDPLVIKGLDRTAR 420
Query: 421 HMVIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALD 480
+VIPYMPML+PPV W GYDKGGHI LPSF MRTHGAKQQRDA KRTPK+QLTPVF+ALD
Sbjct: 421 QIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKEQLTPVFQALD 480
Query: 481 TLGNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSV 540
TLGNTKWRINKRIL VV+RIW+ GG LA LV+RDDVPLPEKPD+EDETL++KWKW+++SV
Sbjct: 481 TLGNTKWRINKRILGVVERIWSSGGDLAGLVNRDDVPLPEKPDTEDETLIKKWKWEIRSV 540
Query: 541 KKENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGI 600
KKENMERHSQRCDIELKLAVAR MKDEEGFYYPHN+DFRGRAYPMHP+LNHLGSDLCRGI
Sbjct: 541 KKENMERHSQRCDIELKLAVARNMKDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGI 600
Query: 601 LEFAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRR 660
LEFAEGRPLRKSGL+WLKIHLANLFAGGVDKLSHDGRMTF+ENHLEDIFDSAD+PL GRR
Sbjct: 601 LEFAEGRPLRKSGLSWLKIHLANLFAGGVDKLSHDGRMTFVENHLEDIFDSADKPLGGRR 660
Query: 661 WWLNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
WWLNAEDPFQFLA CMNLTEALRS SPET+ISHIP
Sbjct: 661 WWLNAEDPFQFLAGCMNLTEALRSSSPETYISHIP 684
BLAST of MS003295 vs. TAIR 10
Match:
AT5G15700.1 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 826.2 bits (2133), Expect = 1.9e-239
Identity = 437/693 (63.06%), Postives = 526/693 (75.90%), Query Frame = 0
Query: 3 STSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKFGT 62
S +W+ IAKQAISR+ RL+ S +R G+L ES+F + VL S
Sbjct: 37 SFPMWRNIAKQAISRSAA-RLNVSSQTR--GLLVSSPESIFSKNLSFRFPVLGSPCHGKG 96
Query: 63 WEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVA-EAVSSTDVDEDASVDD 122
+ G +E S C L+G +G++SVA E V STDV+E+ VD
Sbjct: 97 FRCLSGITR--REEFSKSERC---------LSGTLARGYTSVAEEEVLSTDVEEEPEVD- 156
Query: 123 EIQELLQEMTKEEKRQVEYRRRRQKMAK-GMGQGKYQMLKRRQVKIETEAWELAVKEYKE 182
ELL+EM KE+KR+ R +K + GMG+ K+Q L RRQVKIETE WE A EY E
Sbjct: 157 ---ELLKEMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYME 216
Query: 183 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 242
LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI K+QEL R GK++ YA Y D+LPAD +
Sbjct: 217 LLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKI 276
Query: 243 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 302
SVITMHKLMG LM G ++G +VV AAC +GDAIEQEIRI FL+K KKK D +
Sbjct: 277 SVITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDK-KKKGDDNEESGGV 336
Query: 303 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 362
+ ++ +KEQ+KLRKKV LIKKQKL AVR+I++ D +KPW D +AKVGSRLIELL +T
Sbjct: 337 ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRT 396
Query: 363 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 422
AYIQ PADQ + PD+RPAF H+F+ + + + NS R+YGVIECDPLV KGLE++ R+
Sbjct: 397 AYIQSPADQQDNDLPDVRPAFVHTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYA 456
Query: 423 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 482
V+PYMPMLVPP+ W+GYDKG ++FL S++M+THGAKQQR+A+K PK QL PVFEALDTL
Sbjct: 457 VMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTL 516
Query: 483 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 542
G+TKWR+NKR+L+VVDRIW+ GG +AD+VDR DVPLPEKPD+EDE +L+KWKW+VKS KK
Sbjct: 517 GSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKK 576
Query: 543 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 602
N ERHSQRCD ELKL+VARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LE
Sbjct: 577 VNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLE 636
Query: 603 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 662
FAEGRP+ SGL WLKIHLANL+AGGVDKLS DGR+ F ENHL+DIFDSADRPLEG RWW
Sbjct: 637 FAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWW 696
Query: 663 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
L AEDPFQ LA C++LTEALRS SPET +SHIP
Sbjct: 697 LQAEDPFQCLAVCISLTEALRSPSPETVLSHIP 708
BLAST of MS003295 vs. TAIR 10
Match:
AT5G15700.2 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 826.2 bits (2133), Expect = 1.9e-239
Identity = 437/693 (63.06%), Postives = 526/693 (75.90%), Query Frame = 0
Query: 3 STSVWKIIAKQAISRNRKFRLDWHSFSRSHGVLGRPHESLFPEKFMSGSSVLSSLPKFGT 62
S +W+ IAKQAISR+ RL+ S +R G+L ES+F + VL S
Sbjct: 37 SFPMWRNIAKQAISRSAA-RLNVSSQTR--GLLVSSPESIFSKNLSFRFPVLGSPCHGKG 96
Query: 63 WEMYIGRNEILSQEVYGSRFCFGSVGTRIGLNGMCPKGFSSVA-EAVSSTDVDEDASVDD 122
+ G +E S C L+G +G++SVA E V STDV+E+ VD
Sbjct: 97 FRCLSGITR--REEFSKSERC---------LSGTLARGYTSVAEEEVLSTDVEEEPEVD- 156
Query: 123 EIQELLQEMTKEEKRQVEYRRRRQKMAK-GMGQGKYQMLKRRQVKIETEAWELAVKEYKE 182
ELL+EM KE+KR+ R +K + GMG+ K+Q L RRQVKIETE WE A EY E
Sbjct: 157 ---ELLKEMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYME 216
Query: 183 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIKEQELIREGKNRTAYAPYFDRLPADMM 242
LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI K+QEL R GK++ YA Y D+LPAD +
Sbjct: 217 LLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKI 276
Query: 243 SVITMHKLMGLLMMGHEHGNARVVQAACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENND 302
SVITMHKLMG LM G ++G +VV AAC +GDAIEQEIRI FL+K KKK D +
Sbjct: 277 SVITMHKLMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDK-KKKGDDNEESGGV 336
Query: 303 KPDSLIKEQEKLRKKVTNLIKKQKLPAVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQT 362
+ ++ +KEQ+KLRKKV LIKKQKL AVR+I++ D +KPW D +AKVGSRLIELL +T
Sbjct: 337 ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRT 396
Query: 363 AYIQPPADQLADGPPDIRPAFRHSFRTVMKEANKNSSRRYGVIECDPLVVKGLERTARHM 422
AYIQ PADQ + PD+RPAF H+F+ + + + NS R+YGVIECDPLV KGLE++ R+
Sbjct: 397 AYIQSPADQQDNDLPDVRPAFVHTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYA 456
Query: 423 VIPYMPMLVPPVNWTGYDKGGHIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTL 482
V+PYMPMLVPP+ W+GYDKG ++FL S++M+THGAKQQR+A+K PK QL PVFEALDTL
Sbjct: 457 VMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTL 516
Query: 483 GNTKWRINKRILSVVDRIWTGGGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKK 542
G+TKWR+NKR+L+VVDRIW+ GG +AD+VDR DVPLPEKPD+EDE +L+KWKW+VKS KK
Sbjct: 517 GSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKK 576
Query: 543 ENMERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 602
N ERHSQRCD ELKL+VARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRG+LE
Sbjct: 577 VNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLE 636
Query: 603 FAEGRPLRKSGLNWLKIHLANLFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWW 662
FAEGRP+ SGL WLKIHLANL+AGGVDKLS DGR+ F ENHL+DIFDSADRPLEG RWW
Sbjct: 637 FAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWW 696
Query: 663 LNAEDPFQFLAACMNLTEALRSFSPETFISHIP 694
L AEDPFQ LA C++LTEALRS SPET +SHIP
Sbjct: 697 LQAEDPFQCLAVCISLTEALRSPSPETVLSHIP 708
BLAST of MS003295 vs. TAIR 10
Match:
AT1G68990.1 (male gametophyte defective 3 )
HSP 1 Score: 784.6 bits (2025), Expect = 6.3e-227
Identity = 383/605 (63.31%), Postives = 484/605 (80.00%), Query Frame = 0
Query: 99 KGFSSVAEAVSSTDVDEDASVDDEIQELLQEMTKEEKRQVEYRRRR----QKMAKGMGQG 158
+G+++ A+A+ STD ++++S DE+ EL+ EM KE +R + R +++ GMG
Sbjct: 71 EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERIRKKARLAAIPPKRVIAGMGAQ 130
Query: 159 KYQMLKRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIK 218
K+ MLK+RQVK+ETE WE A +E +E+L DMCEQKLAPNLPYMKSLFLGWFEP+R+AI
Sbjct: 131 KFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQD 190
Query: 219 EQELIREGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEH-GNARVVQAACVIGDA 278
+ + + K + YAP+ ++LPAD M+VITMHK+MGLLM E G ++V AA IG+A
Sbjct: 191 DLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGEA 250
Query: 279 IEQEIRIHNFLEKMKKKKHDKDGENNDKPDS-----LIKEQEKLRKKVTNLIKKQKLPAV 338
+EQE+RI++FL+K K KK+ D N + ++ + KE EK RK+VT L++K KL V
Sbjct: 251 VEQEVRINSFLQK-KNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQV 310
Query: 339 RQIVKGADDSKPWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRTV 398
+ +V+ D KPWGQ+A+ KVG+RLI+LL + AYIQPPA+Q DGPPDIRPAF+ +FRTV
Sbjct: 311 KALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTV 370
Query: 399 MKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLPSF 458
E N +SRRYG IECDPLV+KGL+++ARHMVIPY+PML+PP NWTGYD+G H FLPS+
Sbjct: 371 TLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSY 430
Query: 459 VMRTHGAKQQRDAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGRLADL 518
VMRTHGAKQQR +KRTPK+QL PV+EALDTLGNTKW+INK++LS+VDRIW GGR+ L
Sbjct: 431 VMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGL 490
Query: 519 VDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEEGF 578
VDR+DVP+PE+P+ ED+ + W+W+ K K+N ERHSQRCDIELKL VARKMKDEEGF
Sbjct: 491 VDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEGF 550
Query: 579 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFAGGVD 638
YYPHN+DFRGRAYP+HPYLNHLGSDLCRGILEF EG+PL KSGL WLKIH+ANL+AGGVD
Sbjct: 551 YYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVD 610
Query: 639 KLSHDGRMTFIENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFSPETF 694
KL+++ R+ F E+HLEDIFDS+DRPLEG+RWWLNAEDPFQ LAAC+NL+EALRS PE
Sbjct: 611 KLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEAA 670
BLAST of MS003295 vs. TAIR 10
Match:
AT1G68990.2 (male gametophyte defective 3 )
HSP 1 Score: 777.7 bits (2007), Expect = 7.8e-225
Identity = 383/612 (62.58%), Postives = 484/612 (79.08%), Query Frame = 0
Query: 99 KGFSSVAEAVSSTDVDEDASVDDEIQELLQEMTKEEKRQVEYRRRR----QKMAKGMGQG 158
+G+++ A+A+ STD ++++S DE+ EL+ EM KE +R + R +++ GMG
Sbjct: 71 EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERIRKKARLAAIPPKRVIAGMGAQ 130
Query: 159 KYQMLKRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIIK 218
K+ MLK+RQVK+ETE WE A +E +E+L DMCEQKLAPNLPYMKSLFLGWFEP+R+AI
Sbjct: 131 KFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQD 190
Query: 219 EQELIREGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEH-GNARVVQAACVIGDA 278
+ + + K + YAP+ ++LPAD M+VITMHK+MGLLM E G ++V AA IG+A
Sbjct: 191 DLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGEA 250
Query: 279 IEQEIRIHNFLEKMKKKKHDKDGENNDKPDS-----LIKEQEKLRKKVTNLIKKQKLPAV 338
+EQE+RI++FL+K K KK+ D N + ++ + KE EK RK+VT L++K KL V
Sbjct: 251 VEQEVRINSFLQK-KNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQV 310
Query: 339 RQIVKGADDSKPWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFRTV 398
+ +V+ D KPWGQ+A+ KVG+RLI+LL + AYIQPPA+Q DGPPDIRPAF+ +FRTV
Sbjct: 311 KALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTV 370
Query: 399 MKEANKNSSRRYGVIECDPLVVKGLERT-------ARHMVIPYMPMLVPPVNWTGYDKGG 458
E N +SRRYG IECDPLV+KGL+++ ARHMVIPY+PML+PP NWTGYD+G
Sbjct: 371 TLE-NTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYDQGA 430
Query: 459 HIFLPSFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTG 518
H FLPS+VMRTHGAKQQR +KRTPK+QL PV+EALDTLGNTKW+INK++LS+VDRIW
Sbjct: 431 HFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWAN 490
Query: 519 GGRLADLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARK 578
GGR+ LVDR+DVP+PE+P+ ED+ + W+W+ K K+N ERHSQRCDIELKL VARK
Sbjct: 491 GGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARK 550
Query: 579 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLAN 638
MKDEEGFYYPHN+DFRGRAYP+HPYLNHLGSDLCRGILEF EG+PL KSGL WLKIH+AN
Sbjct: 551 MKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIAN 610
Query: 639 LFAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALR 694
L+AGGVDKL+++ R+ F E+HLEDIFDS+DRPLEG+RWWLNAEDPFQ LAAC+NL+EALR
Sbjct: 611 LYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALR 670
BLAST of MS003295 vs. TAIR 10
Match:
AT2G24120.2 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 700.7 bits (1807), Expect = 1.2e-201
Identity = 332/547 (60.69%), Postives = 429/547 (78.43%), Query Frame = 0
Query: 149 KGMGQGKYQMLKRRQVKIETEAWELAVKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPL 208
K + + K+ L+RRQVK ETEAWE V EY++L +MCE+ LAPNLPY+K +FLGWF+PL
Sbjct: 152 KDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPL 211
Query: 209 RDAIIKEQEL--IREGKNRTAYAPYFDRLPADMMSVITMHKLMGLLMMGHEHGNARVVQA 268
+D I +EQ+L + K R AYAP+ + LPAD M+VI MHK+MGL+M GHE G +VVQA
Sbjct: 212 KDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQA 271
Query: 269 ACVIGDAIEQEIRIHNFLEKMKKKKHDKDGENNDKPDSLIKEQEKLRKKVTNLIKKQKLP 328
A IG AIEQE+RIHNFL++ +K + G++ ++ +KE++ LRK+V +LI+++++
Sbjct: 272 AVSIGIAIEQEVRIHNFLKRTRK---NNAGDSQEE----LKEKQLLRKRVNSLIRRKRII 331
Query: 329 AVRQIVKGADDSKPWGQDAKAKVGSRLIELLTQTAYIQPPADQLADGPPDIRPAFRHSFR 388
++VK ++ +KPWG+ +AK+GSRL+ELL + AY+QPP Q D P+ RPAFRH F+
Sbjct: 332 DALKVVK-SEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFK 391
Query: 389 TVMKEANKNSSRRYGVIECDPLVVKGLERTARHMVIPYMPMLVPPVNWTGYDKGGHIFLP 448
TV K RRYGVIECD L++ GL+++A+HM+IPY+PMLVPP W GYDKGG++FLP
Sbjct: 392 TVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLP 451
Query: 449 SFVMRTHGAKQQRDAVKRTPKQQLTPVFEALDTLGNTKWRINKRILSVVDRIWTGGGRLA 508
S++MRTHG+K+Q+DA+K + VFEALDTLGNTKWR+N+ IL VV+R+W GG +A
Sbjct: 452 SYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIA 511
Query: 509 DLVDRDDVPLPEKPDSEDETLLRKWKWKVKSVKKENMERHSQRCDIELKLAVARKMKDEE 568
LV+R+DVP+PEKP SED L+ WKW + K N ERHS RCD+ELKL+VARKMKDEE
Sbjct: 512 GLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEE 571
Query: 569 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLRKSGLNWLKIHLANLFAGG 628
GFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEFAEGRPL KSGL+WLKIHLANL+AGG
Sbjct: 572 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGG 631
Query: 629 VDKLSHDGRMTFIENHLEDIFDSADRPLEGRRWWLNAEDPFQFLAACMNLTEALRSFSPE 688
V+KLSHD R+ F+ENHL+DI DSA+ P+ G+RWWL AEDPFQ LAAC+ LT+AL+S SP
Sbjct: 632 VEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPY 690
Query: 689 TFISHIP 694
+ ISH+P
Sbjct: 692 SVISHLP 690
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022134053.1 | 0.0e+00 | 99.71 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica chara... | [more] |
XP_022993982.1 | 0.0e+00 | 88.60 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita maxim... | [more] |
XP_023551171.1 | 0.0e+00 | 88.60 | DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like [Cucurbita pepo... | [more] |
KAG6578529.1 | 0.0e+00 | 88.31 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita a... | [more] |
XP_038890081.1 | 0.0e+00 | 88.62 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Beni... | [more] |
Match Name | E-value | Identity | Description | |
Q8VWF8 | 4.2e-276 | 69.47 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestr... | [more] |
Q8L6J3 | 5.5e-276 | 69.46 | DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum... | [more] |
Q93Y94 | 6.1e-251 | 64.15 | DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=... | [more] |
Q8L6J5 | 1.4e-250 | 64.29 | DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RP... | [more] |
Q9LFV6 | 2.7e-238 | 63.06 | DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thalia... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1C0Y4 | 0.0e+00 | 99.71 | DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111006419 PE=3 ... | [more] |
A0A6J1JUF5 | 0.0e+00 | 88.60 | DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489816 PE=3 SV=... | [more] |
A0A6J1FHA8 | 0.0e+00 | 88.31 | DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111445458 PE=3 S... | [more] |
A0A0A0KXM5 | 0.0e+00 | 78.85 | DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G642180 PE=3 SV=1 | [more] |
A0A1S3CBC4 | 0.0e+00 | 77.99 | DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103498556 PE=3 SV=1 | [more] |