MS003289 (gene) Bitter gourd (TR) v1

Overview


Name	MS003289
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF3317)
Location	scaffold234: 1807069 .. 1807650 (+)
RNA-Seq Expression	MS003289
Synteny	MS003289

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGATACAGCGAAAGATCTACCTTTACAACGTCACGTTTGGGCTTTACATGTTGGATTGGTGGGAGCGAATCCTCTTCAGTATGCTCTCTATCCCGCTATTTCCTCATTAATGGATCCGTGATCTATTTTATCATTTGCAAGCATTCATGGTAGCTGTTTAGGCCTATGATTGAGATTGAGGTTATGCTACCAGTATTATTGTTTAGCCATATAATTGATATTTAGGATTACTTTTGTTGGATTTTTTATTTAATCTTGATCTTCCGTTATTGAAGTTATGTCGTCTGAATTTGGCTGTCTAGTGGTTATATATTGTCAATTTTTAGCCATGCTTCTTAGGCTTGTTTGGGTCGTAGCATAACTGAATCTAAGATTTTGTCTAATTAGAAGTTAAAGCTCGGTAGTTTATGTATTGCTGTTAGATTGAATGGTTTTTGCAATCCTTGCTTCTTGTTATTAGTATTACTTTTCACCTCTTGAATTCTTCATGTGTTATTGCAGATACATTGGTGGTTGTGTTGATGTGGTTCATGTTTTACAATGGATCACGATACGTAAATGATTTGTGCAAGAGG

mRNA sequence

ATGAATTGGATACAGCGAAAGATCTACCTTTACAACGTCACGTTTGGGCTTTACATGTTGGATTGGTGGGAGCGAATCCTCTTCAATACATTGGTGGTTGTGTTGATGTGGTTCATGTTTTACAATGGATCACGATACGTAAATGATTTGTGCAAGAGG

Coding sequence (CDS)

ATGAATTGGATACAGCGAAAGATCTACCTTTACAACGTCACGTTTGGGCTTTACATGTTGGATTGGTGGGAGCGAATCCTCTTCAATACATTGGTGGTTGTGTTGATGTGGTTCATGTTTTACAATGGATCACGATACGTAAATGATTTGTGCAAGAGG

Protein sequence

MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR

Homology

[Close]

BLAST of MS003289 vs. NCBI nr
Match: XP_038889912.1 (uncharacterized protein LOC120079682 [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 8.0e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 53

[Close]

BLAST of MS003289 vs. NCBI nr
Match: XP_004141475.1 (uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetical protein Csa_008788 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53

[Close]

BLAST of MS003289 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53

[Close]

BLAST of MS003289 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGS+YVNDLCKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]

BLAST of MS003289 vs. NCBI nr
Match: KAG7016096.1 (hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDL KR
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 53

[Close]

BLAST of MS003289 vs. ExPASy TrEMBL
Match: A0A1S3C9L1 (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53

[Close]

BLAST of MS003289 vs. ExPASy TrEMBL
Match: A0A6J1BY20 (uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006754 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGS+YVNDLCKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]

BLAST of MS003289 vs. ExPASy TrEMBL
Match: A0A6J1JYU1 (uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDL KR
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 53

[Close]

BLAST of MS003289 vs. ExPASy TrEMBL
Match: A0A6J1FLX2 (uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC111445419 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDL KR
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKR 53

[Close]

BLAST of MS003289 vs. ExPASy TrEMBL
Match: A0A6P5SRN0 (uncharacterized protein LOC110758739 OS=Prunus avium OX=42229 GN=LOC110758739 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNW+QRKIYLYNVTFGLYMLDWWER LFNTLVVVLMWF+FYNGSRYV + CKR
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVVVLMWFIFYNGSRYVTEFCKR 53

[Close]

BLAST of MS003289 vs. TAIR 10
Match: AT2G30942.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-22
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNW+QRKIYLYNVTFGLYMLDWWER LFN+LV++LMWF+ YNGSRY ++LCKR
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVLILMWFILYNGSRYFSELCKR 53

[Close]

BLAST of MS003289 vs. TAIR 10
Match: AT1G06515.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNW+QRKIYLYNVTFGLYMLDWWER LFN+LVVVLMWF+ YNG+RY ++L +R
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQR 53

[Close]

BLAST of MS003289 vs. TAIR 10
Match: AT1G06515.2 (Protein of unknown function (DUF3317) )

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKR 54
          MNW+QRKIYLYNVTFGLYMLDWWER LFN+LVVVLMWF+ YNG+RY ++L +R
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVLYNGTRYFSELFQR 53

The following BLAST results are available for this feature:

BLAST of MS003289 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889912.1	8.0e-23	100.00	uncharacterized protein LOC120079682 [Benincasa hispida]	[more]
XP_004141475.1	2.3e-22	96.23	uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetica...	[more]
XP_008459402.1	2.3e-22	96.23	PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P...	[more]
XP_022134536.1	2.3e-22	98.11	uncharacterized protein LOC111006754 [Momordica charantia]	[more]
KAG7016096.1	2.0e-21	96.23	hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS003289 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003289 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9L1	1.1e-22	96.23	uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=...	[more]
A0A6J1BY20	1.1e-22	98.11	uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JYU1	9.5e-22	96.23	uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112...	[more]
A0A6J1FLX2	9.5e-22	96.23	uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC1114454...	[more]
A0A6P5SRN0	2.3e-20	88.68	uncharacterized protein LOC110758739 OS=Prunus avium OX=42229 GN=LOC110758739 PE...	[more]

BLAST of MS003289 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30942.1	1.9e-22	81.13	Protein of unknown function (DUF3317)	[more]
AT1G06515.1	7.9e-21	79.25	Protein of unknown function (DUF3317)	[more]
AT1G06515.2	7.9e-21	79.25	Protein of unknown function (DUF3317)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 1..52 e-value: 2.9E-25 score: 87.6
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR33727:SF18	PROTEIN, PUTATIVE (DUF3317)-RELATED	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003289.1	MS003289.1	mRNA