MS003279 (gene) Bitter gourd (TR) v1

Overview


Name	MS003279
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold234: 1738795 .. 1739139 (+)
RNA-Seq Expression	MS003279
Synteny	MS003279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCGTCTTTTTCCTGCAGTGGCAATGGCGGCGATGATGGTGGTGTTCCTCTCTTCCACCAATTGCAGAGCTTCGATACTGATGAAATCCAACGCCACCTACGGTTGCGGCGGCGGCGGCGAATGTTTGGGAATCTCGGAGGCGGTGGCGGTGGCGGCGGAGTTGATGGTGGGTAGCCACGTGGCGCGGTTTCTGGATTTTAAAGACAACAAACCGAAAACAGATGCGACGAAAAACCGTAATGTGGGGACCTGCGGGAGCGGCGCCGGAAACCCTAAGGGCGCCTGCAACGGCGACCCGAAGAGTAAAAAAAAATGCCCCACGTACGGCGGCTCCGCCACCTGC

mRNA sequence

GGTCGTCTTTTTCCTGCAGTGGCAATGGCGGCGATGATGGTGGTGTTCCTCTCTTCCACCAATTGCAGAGCTTCGATACTGATGAAATCCAACGCCACCTACGGTTGCGGCGGCGGCGGCGAATGTTTGGGAATCTCGGAGGCGGTGGCGGTGGCGGCGGAGTTGATGGTGGGTAGCCACGTGGCGCGGTTTCTGGATTTTAAAGACAACAAACCGAAAACAGATGCGACGAAAAACCGTAATGTGGGGACCTGCGGGAGCGGCGCCGGAAACCCTAAGGGCGCCTGCAACGGCGACCCGAAGAGTAAAAAAAAATGCCCCACGTACGGCGGCTCCGCCACCTGC

Coding sequence (CDS)

GGTCGTCTTTTTCCTGCAGTGGCAATGGCGGCGATGATGGTGGTGTTCCTCTCTTCCACCAATTGCAGAGCTTCGATACTGATGAAATCCAACGCCACCTACGGTTGCGGCGGCGGCGGCGAATGTTTGGGAATCTCGGAGGCGGTGGCGGTGGCGGCGGAGTTGATGGTGGGTAGCCACGTGGCGCGGTTTCTGGATTTTAAAGACAACAAACCGAAAACAGATGCGACGAAAAACCGTAATGTGGGGACCTGCGGGAGCGGCGCCGGAAACCCTAAGGGCGCCTGCAACGGCGACCCGAAGAGTAAAAAAAAATGCCCCACGTACGGCGGCTCCGCCACCTGC

Protein sequence

GRLFPAVAMAAMMVVFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFLDFKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC

Homology

[Close]

BLAST of MS003279 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-12
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 4   FPAVAMAAMMV--VFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHV 63
           F  VA+AA+MV  +  SS + RAS L ++NATYG               V  EL+V   +
Sbjct: 7   FWGVAVAALMVTIILCSSNSSRASSLGRANATYG--------------EVEVELLVRREI 66

Query: 64  ARFLDFKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
           ARFL+FK+ K  TD T+N  V +CG+G GNP G C+G P +KK C +Y G++ C
Sbjct: 67  ARFLNFKNMKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]

BLAST of MS003279 vs. NCBI nr
Match: KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-08
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 7   VAMAAMMVVFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFLD 66
           V +  ++ +F SS +CR S+L+K+NATY              V +  EL++   + R+L 
Sbjct: 13  VVVMMLITIFCSSHSCRGSVLIKANATYD-------------VVMTEELLIYPDINRYLM 72

Query: 67  FKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
           F     KT  T ++NV  CG+GAGN    C+G   +KKKC  Y G   C
Sbjct: 73  FNGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of MS003279 vs. NCBI nr
Match: KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 7   VAMAAMMVVFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFLD 66
           V +  ++ +  SS  CRAS+L+K+NATYG        G+     + AEL++   V R+L 
Sbjct: 18  VVVMMLITILYSSHTCRASVLIKANATYG--------GV-----MTAELLIYPDVTRYLM 77

Query: 67  FKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
           +     KT  TK++ V  C +G GN    C G   +KK+C  YG    C
Sbjct: 78  YDHADSKTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of MS003279 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-06
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 7   VAMAAMMVVFLSST-NCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFL 66
           V +  M +  LSS+ +CR SILMK+NAT G               +  EL++   + R+L
Sbjct: 13  VVVVVMSITILSSSYSCRGSILMKANATLGS-------------VMTTELIIKHDITRYL 72

Query: 67  DFKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
            FK     T AT + N+ TCG+GAGN    C G+  + ++C  Y G   C
Sbjct: 73  IFKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of MS003279 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 7   VAMAAMMVVFLSST-NCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFL 66
           V +  M +  LSS+ +CR S+LMK+NATYG        G+S       E+++   + RFL
Sbjct: 13  VVVVVMSITILSSSYSCRGSVLMKANATYG--------GVS-----TTEMIIYHDITRFL 72

Query: 67  DFKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
               +KP T  T   N+  C +G GN  G C G+  ++++C  Y  +  C
Sbjct: 73  MPPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of MS003279 vs. ExPASy TrEMBL
Match: A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 7   VAMAAMMVVFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFLD 66
           V +  ++ +F SS +CR S+L+K+NATY              V +  EL++   + R+L 
Sbjct: 13  VVVMMLITIFCSSHSCRGSVLIKANATYD-------------VVMTEELLIYPDINRYLM 72

Query: 67  FKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
           F     KT  T ++NV  CG+GAGN    C+G   +KKKC  Y G   C
Sbjct: 73  FNGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of MS003279 vs. ExPASy TrEMBL
Match: A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.4e-07
Identity = 38/109 (34.86%), Postives = 53/109 (48.62%), Query Frame = 0


Query: 7   VAMAAMMVVFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFLD 66
           V +  ++ +  SS +CR S+L+K+NATY              V +  ELM+   + R L 
Sbjct: 13  VVVVMLITILFSSHSCRGSVLIKANATYD-------------VVMTEELMIYGDINRHLM 72

Query: 67  FKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
              +K KT  T  RNV  CG+GAGN    C G   ++ KC  Y G   C
Sbjct: 73  PSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

[Close]

BLAST of MS003279 vs. ExPASy TrEMBL
Match: A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.4e-07
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 7   VAMAAMMVVFLSSTNCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFLD 66
           V +  ++ +  SS  CRAS+L+K+NATYG        G+     + AEL++   V R+L 
Sbjct: 18  VVVMMLITILYSSHTCRASVLIKANATYG--------GV-----MTAELLIYPDVTRYLM 77

Query: 67  FKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
           +     KT  TK++ V  C +G GN    C G   +KK+C  YG    C
Sbjct: 78  YDHADSKTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of MS003279 vs. ExPASy TrEMBL
Match: A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 7   VAMAAMMVVFLSST-NCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFL 66
           V +  M +  LSS+ +CR SILMK+NAT G               +  EL++   + R+L
Sbjct: 13  VVVVVMSITILSSSYSCRGSILMKANATLGS-------------VMTTELIIKHDITRYL 72

Query: 67  DFKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
            FK     T AT + N+ TCG+GAGN    C G+  + ++C  Y G   C
Sbjct: 73  IFKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of MS003279 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 7   VAMAAMMVVFLSST-NCRASILMKSNATYGCGGGGECLGISEAVAVAAELMVGSHVARFL 66
           V +  M +  LSS+ +CR S+LMK+NATYG        G+S       E+++   + RFL
Sbjct: 13  VVVVVMSITILSSSYSCRGSVLMKANATYG--------GVS-----TTEMIIYHDITRFL 72

Query: 67  DFKDNKPKTDATKNRNVGTCGSGAGNPKGACNGDPKSKKKCPTYGGSATC 116
               +KP T  T   N+  C +G GN  G C G+  ++++C  Y  +  C
Sbjct: 73  MPPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

The following BLAST results are available for this feature:

BLAST of MS003279 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578548.1	3.6e-12	43.86	hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0039430.1	3.2e-08	35.78	hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061...	[more]
KGN52518.1	1.7e-06	34.86	hypothetical protein Csa_007870 [Cucumis sativus]	[more]
KGN52519.1	3.0e-06	35.45	hypothetical protein Csa_008872 [Cucumis sativus]	[more]
KAA0039429.1	1.2e-04	33.64	hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061...	[more]

BLAST of MS003279 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR80	1.5e-08	35.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVT8	6.4e-07	34.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1	[more]
A0A0A0KSJ4	8.4e-07	34.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1	[more]
A0A0A0KUG7	1.4e-06	35.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1	[more]
A0A5D3BNE4	6.0e-05	33.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS003279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003279.1	MS003279.1	mRNA