MS003275 (gene) Bitter gourd (TR) v1

Overview


Name	MS003275
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	scaffold234: 1714304 .. 1714654 (+)
RNA-Seq Expression	MS003275
Synteny	MS003275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGATTCCATCCGCAAACGCAAAGTTTATGGCTGACTGATATTGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTCATATGTATAGAACTAACTTCGGGATTGGACACAGTATAAAAGATCTTTTAGAAGCACATATTCCGCCGGGGGGACGATTGGGGCGTGGACATAAAGGTCTTTATGACACAATCAATAATTCGCTTCATTTTCAATTAGGCCTTGCTTTAGCCTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACCCATCAC

mRNA sequence

GGGGGATTCCATCCGCAAACGCAAAGTTTATGGCTGACTGATATTGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTCATATGTATAGAACTAACTTCGGGATTGGACACAGTATAAAAGATCTTTTAGAAGCACATATTCCGCCGGGGGGACGATTGGGGCGTGGACATAAAGGTCTTTATGACACAATCAATAATTCGCTTCATTTTCAATTAGGCCTTGCTTTAGCCTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACCCATCAC

Coding sequence (CDS)

GGGGGATTCCATCCGCAAACGCAAAGTTTATGGCTGACTGATATTGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTCATATGTATAGAACTAACTTCGGGATTGGACACAGTATAAAAGATCTTTTAGAAGCACATATTCCGCCGGGGGGACGATTGGGGCGTGGACATAAAGGTCTTTATGACACAATCAATAATTCGCTTCATTTTCAATTAGGCCTTGCTTTAGCCTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACCCATCAC

Protein sequence

GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH

Homology

[Close]

BLAST of MS003275 vs. NCBI nr
Match: CBB12368.1 (Photosystem I P700 chlorophyll A apoprotein, partial [Vanilla cf. phalaenopsis AB-2009])

HSP 1 Score: 244.6 bits (623), Expect = 4.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 185 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 244

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 245 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 301

[Close]

BLAST of MS003275 vs. NCBI nr
Match: YP_009263860.1 (photosystem I P700 chlorophyll a [Dactyladenia bellayana] >YP_009263943.1 photosystem I P700 chlorophyll a [Dactyladenia buchneri] >YP_009264026.1 photosystem I P700 chlorophyll a [Dactyladenia floretii] >YP_009264524.1 photosystem I P700 chlorophyll a [Hirtella zanzibarica] >ANJ18074.1 photosystem I P700 chlorophyll a [Dactyladenia bellayana] >ANJ18157.1 photosystem I P700 chlorophyll a [Dactyladenia buchneri] >ANJ18240.1 photosystem I P700 chlorophyll a [Dactyladenia floretii] >ANJ18821.1 photosystem I P700 chlorophyll a [Hirtella zanzibarica])

HSP 1 Score: 244.6 bits (623), Expect = 4.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. NCBI nr
Match: YP_009262290.1 (photosystem I P700 apoprotein A2 [Spondias tuberosa] >YP_009431472.1 photosystem I P700 apoprotein A2 [Spondias mombin] >YP_009461640.1 photosystem I P700 chlorophyll a apoprotein A2 [Commiphora wightii] >YP_009561514.1 photosystem I P700 apoprotein A2 [Commiphora foliacea] >ANI86816.1 photosystem I P700 apoprotein A2 [Spondias tuberosa] >ASY95764.1 photosystem I P700 apoprotein A2 [Spondias mombin] >AUT83802.1 photosystem I P700 chlorophyll a apoprotein A2 [Commiphora wightii] >QAT19602.1 photosystem I P700 apoprotein A2 [Commiphora foliacea])

HSP 1 Score: 244.6 bits (623), Expect = 4.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. NCBI nr
Match: AMX27447.1 (PsaB, partial [Herminium humidicola])

HSP 1 Score: 244.6 bits (623), Expect = 4.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 212 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 271

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 272 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 328

[Close]

BLAST of MS003275 vs. NCBI nr
Match: QRI60829.1 (photosystem I P700 chlorophyll a apoprotein A2 [Millettia dura])

HSP 1 Score: 244.6 bits (623), Expect = 4.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy Swiss-Prot
Match: Q09MH9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Citrus sinensis OX=2711 GN=psaB PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 5.6e-64
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy Swiss-Prot
Match: Q6EW49 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Nymphaea alba OX=34301 GN=psaB PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 9.6e-64
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNS+HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy Swiss-Prot
Match: Q3BAP1 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=psaB PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 9.6e-64
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAF+FLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFLFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy Swiss-Prot
Match: Q06RD2 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Jasminum nudiflorum OX=126431 GN=psaB PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-63
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLL+AHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLDAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy Swiss-Prot
Match: A6MMK6 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Dioscorea elephantipes OX=145284 GN=psaB PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-63
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAF+FLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFLFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNS+HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy TrEMBL
Match: A0A1X9QHA3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acer palmatum OX=66201 GN=psaB PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy TrEMBL
Match: A0A0Y0TUI1 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Euphorbia esula OX=3993 GN=psaB PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy TrEMBL
Match: K4K7I2 (Photosystem I (Fragment) OS=Chrysobalanus icaco OX=22978 GN=psaB PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy TrEMBL
Match: A0A650G6Q0 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acer tataricum subsp. ginnala OX=57656 GN=psaB PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. ExPASy TrEMBL
Match: A0A7D5B4B3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acer henryi OX=168562 GN=psaB PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 239.2 bits (609), Expect = 1.7e-63
Identity = 112/117 (95.73%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GGFHPQTQSLWLTD+AHHHLAIA +FL+AGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG
Sbjct: 259 GGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 318

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLYDTINNS+HFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH
Sbjct: 319 HKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 375

[Close]

BLAST of MS003275 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 1   GGFHPQTQSLWLTDIAHHHLAIAFIFLVAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRG 60
           GG  P T  LWLTDIAHHHLAIA +FL+AGHMYRTN+GIGH IKD+LEAH   G   G+G
Sbjct: 277 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAH--KGPFTGQG 336

Query: 61  HKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHH 118
           HKGLY+ +  S H QL L LA LG +T +VA HMYS+P Y ++A D+ TQ +L+THH
Sbjct: 337 HKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHH 391

The following BLAST results are available for this feature:

BLAST of MS003275 vs. NCBI nr


Match Name	E-value	Identity	Description
CBB12368.1	4.3e-61	100.00	Photosystem I P700 chlorophyll A apoprotein, partial [Vanilla cf. phalaenopsis A...	[more]
YP_009263860.1	4.3e-61	100.00	photosystem I P700 chlorophyll a [Dactyladenia bellayana] >YP_009263943.1 photos...	[more]
YP_009262290.1	4.3e-61	100.00	photosystem I P700 apoprotein A2 [Spondias tuberosa] >YP_009431472.1 photosystem...	[more]
AMX27447.1	4.3e-61	100.00	PsaB, partial [Herminium humidicola]	[more]
QRI60829.1	4.3e-61	100.00	photosystem I P700 chlorophyll a apoprotein A2 [Millettia dura]	[more]

BLAST of MS003275 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09MH9	5.6e-64	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Citrus sinensis OX=2711 GN=psa...	[more]
Q6EW49	9.6e-64	99.15	Photosystem I P700 chlorophyll a apoprotein A2 OS=Nymphaea alba OX=34301 GN=psaB...	[more]
Q3BAP1	9.6e-64	99.15	Photosystem I P700 chlorophyll a apoprotein A2 OS=Phalaenopsis aphrodite subsp. ...	[more]
Q06RD2	1.3e-63	99.15	Photosystem I P700 chlorophyll a apoprotein A2 OS=Jasminum nudiflorum OX=126431 ...	[more]
A6MMK6	1.6e-63	98.29	Photosystem I P700 chlorophyll a apoprotein A2 OS=Dioscorea elephantipes OX=1452...	[more]

BLAST of MS003275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1X9QHA3	2.1e-61	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Acer palmatum OX=66201 GN=psaB...	[more]
A0A0Y0TUI1	2.1e-61	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Euphorbia esula OX=3993 GN=psa...	[more]
K4K7I2	2.1e-61	100.00	Photosystem I (Fragment) OS=Chrysobalanus icaco OX=22978 GN=psaB PE=3 SV=1	[more]
A0A650G6Q0	2.1e-61	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Acer tataricum subsp. ginnala ...	[more]
A0A7D5B4B3	2.1e-61	100.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Acer henryi OX=168562 GN=psaB ...	[more]

BLAST of MS003275 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	1.7e-63	95.73	Photosystem I, PsaA/PsaB protein	[more]
ATCG00350.1	1.9e-38	62.39	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 111..117 score: 20.05 coord: 72..95 score: 73.07 coord: 15..33 score: 80.1
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..117 e-value: 1.8E-58 score: 198.4
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..117 e-value: 2.6E-62 score: 212.9
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 1..117
None	No IPR available	PANTHER	PTHR30128:SF55	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 1..117
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003275.1	MS003275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid