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MS003267 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTCGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAAATATGGCGAAACAACGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCAAAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGACGCAGAAAACGCCGTCGTTTCA ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTCGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAAATATGGCGAAACAACGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCAAAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGACGCAGAAAACGCCGTCGTTTCA ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTCGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAAATATGGCGAAACAACGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCAAAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGACGCAGAAAACGCCGTCGTTTCA MSSKTKILPNPLRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVVS Homology
BLAST of MS003267 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima]) HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20 Identity = 71/102 (69.61%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of MS003267 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19 Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 0
BLAST of MS003267 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18 Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 0
BLAST of MS003267 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 102.1 bits (253), Expect = 3.4e-18 Identity = 69/111 (62.16%), Postives = 79/111 (71.17%), Query Frame = 0
BLAST of MS003267 vs. NCBI nr
Match: XP_021605600.1 (uncharacterized protein LOC110610041 [Manihot esculenta] >OAY56902.1 hypothetical protein MANES_02G054200v8 [Manihot esculenta]) HSP 1 Score: 82.4 bits (202), Expect = 2.8e-12 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 0
BLAST of MS003267 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20 Identity = 71/102 (69.61%), Postives = 78/102 (76.47%), Query Frame = 0
BLAST of MS003267 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20 Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 0
BLAST of MS003267 vs. ExPASy TrEMBL
Match: A0A2C9WB72 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G054200 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 0
BLAST of MS003267 vs. ExPASy TrEMBL
Match: B9SJE1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0525880 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11 Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 0
BLAST of MS003267 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11 Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 0
BLAST of MS003267 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 5.9e-08 Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 0
BLAST of MS003267 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07 Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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