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MS003220 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAATGAGGAAGCGTCAAGTTGTGCTTAGAAGAGAAGAGCCCTCAAGAAACACAGCGGCTTCATCCTTCACAGTGAGGAGTGTTAGATATGGGGAGTGCCAGAAGAATCATGCCGCCGGGGTCGGAGGGTACGCCGTGGATGGGTGCCGAGAATTCATGGCGAGCGGTGATGAAGGGACGAGCGGCGAGCTGACTTGCGCCGCCTGCGGTTGCCACCGGAACTTCCATAGACGACAGGTCGGAACCGAGGTAGTTTGTGATTGCTCTTCACCT AAAATGAGGAAGCGTCAAGTTGTGCTTAGAAGAGAAGAGCCCTCAAGAAACACAGCGGCTTCATCCTTCACAGTGAGGAGTGTTAGATATGGGGAGTGCCAGAAGAATCATGCCGCCGGGGTCGGAGGGTACGCCGTGGATGGGTGCCGAGAATTCATGGCGAGCGGTGATGAAGGGACGAGCGGCGAGCTGACTTGCGCCGCCTGCGGTTGCCACCGGAACTTCCATAGACGACAGGTCGGAACCGAGGTAGTTTGTGATTGCTCTTCACCT AAAATGAGGAAGCGTCAAGTTGTGCTTAGAAGAGAAGAGCCCTCAAGAAACACAGCGGCTTCATCCTTCACAGTGAGGAGTGTTAGATATGGGGAGTGCCAGAAGAATCATGCCGCCGGGGTCGGAGGGTACGCCGTGGATGGGTGCCGAGAATTCATGGCGAGCGGTGATGAAGGGACGAGCGGCGAGCTGACTTGCGCCGCCTGCGGTTGCCACCGGAACTTCCATAGACGACAGGTCGGAACCGAGGTAGTTTGTGATTGCTCTTCACCT KMRKRQVVLRREEPSRNTAASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTSGELTCAACGCHRNFHRRQVGTEVVCDCSSP Homology
BLAST of MS003220 vs. NCBI nr
Match: XP_022134197.1 (mini zinc finger protein 2-like [Momordica charantia]) HSP 1 Score: 188.3 bits (477), Expect = 2.8e-44 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of MS003220 vs. NCBI nr
Match: XP_016902406.1 (PREDICTED: mini zinc finger protein 2 [Cucumis melo] >KAA0039501.1 mini zinc finger protein 2 [Cucumis melo var. makuwa] >TYK15255.1 mini zinc finger protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39 Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of MS003220 vs. NCBI nr
Match: XP_034707877.1 (mini zinc finger protein 2-like [Vitis riparia] >RVW59707.1 Mini zinc finger protein 2 [Vitis vinifera] >RVW82668.1 Mini zinc finger protein 2 [Vitis vinifera]) HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38 Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of MS003220 vs. NCBI nr
Match: OMO61911.1 (hypothetical protein COLO4_33302 [Corchorus olitorius]) HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38 Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0
BLAST of MS003220 vs. NCBI nr
Match: XP_038890678.1 (mini zinc finger protein 2-like [Benincasa hispida]) HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38 Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0
BLAST of MS003220 vs. ExPASy Swiss-Prot
Match: Q9LJW5 (Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 9.5e-35 Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 0
BLAST of MS003220 vs. ExPASy Swiss-Prot
Match: Q9CA51 (Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 2.1e-26 Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of MS003220 vs. ExPASy Swiss-Prot
Match: Q2Q493 (Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 4.0e-25 Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 0
BLAST of MS003220 vs. ExPASy Swiss-Prot
Match: Q0J5F8 (Mini zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF4 PE=2 SV=2) HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22 Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 0
BLAST of MS003220 vs. ExPASy Swiss-Prot
Match: B8BIU8 (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 3.5e-21 Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 0
BLAST of MS003220 vs. ExPASy TrEMBL
Match: A0A6J1BYZ4 (mini zinc finger protein 2-like OS=Momordica charantia OX=3673 GN=LOC111006516 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of MS003220 vs. ExPASy TrEMBL
Match: A0A5D3CUT9 (Mini zinc finger protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00300 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39 Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of MS003220 vs. ExPASy TrEMBL
Match: A0A1S4E2E9 (mini zinc finger protein 2 OS=Cucumis melo OX=3656 GN=LOC103498482 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39 Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of MS003220 vs. ExPASy TrEMBL
Match: A0A438HDX6 (Mini zinc finger protein 2 OS=Vitis vinifera OX=29760 GN=MIF2_6 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38 Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of MS003220 vs. ExPASy TrEMBL
Match: A0A1R3GV65 (ZF-HD dimerization-type domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_33302 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38 Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0
BLAST of MS003220 vs. TAIR 10
Match: AT3G28917.1 (mini zinc finger 2 ) HSP 1 Score: 147.1 bits (370), Expect = 6.7e-36 Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 0
BLAST of MS003220 vs. TAIR 10
Match: AT1G74660.1 (mini zinc finger 1 ) HSP 1 Score: 119.4 bits (298), Expect = 1.5e-27 Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of MS003220 vs. TAIR 10
Match: AT1G18835.1 (mini zinc finger ) HSP 1 Score: 115.2 bits (287), Expect = 2.8e-26 Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 0
BLAST of MS003220 vs. TAIR 10
Match: AT3G50890.1 (homeobox protein 28 ) HSP 1 Score: 86.3 bits (212), Expect = 1.4e-17 Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of MS003220 vs. TAIR 10
Match: AT1G14440.1 (homeobox protein 31 ) HSP 1 Score: 85.1 bits (209), Expect = 3.1e-17 Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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