Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTCAGAAATGTTTTGGTATGTGTCTGGTTTGGGTTGCTTGTTTGCTTCTTGCCATGGCTGCAGAAGCAGAAGCTCAGAGCTATGACTATGGCTCCAACAATTCAGCTCAGACCACATCTTCCCACACAATGCTCCTCAAGTTGCTGGGTTTTGTTGTTTCTTTTCTGGTTCTCAAAGAGATGGTT mRNA sequence
ATGGGTGTTCAGAAATGTTTTGGTATGTGTCTGGTTTGGGTTGCTTGTTTGCTTCTTGCCATGGCTGCAGAAGCAGAAGCTCAGAGCTATGACTATGGCTCCAACAATTCAGCTCAGACCACATCTTCCCACACAATGCTCCTCAAGTTGCTGGGTTTTGTTGTTTCTTTTCTGGTTCTCAAAGAGATGGTT Coding sequence (CDS)
ATGGGTGTTCAGAAATGTTTTGGTATGTGTCTGGTTTGGGTTGCTTGTTTGCTTCTTGCCATGGCTGCAGAAGCAGAAGCTCAGAGCTATGACTATGGCTCCAACAATTCAGCTCAGACCACATCTTCCCACACAATGCTCCTCAAGTTGCTGGGTTTTGTTGTTTCTTTTCTGGTTCTCAAAGAGATGGTT Protein sequence
MGVQKCFGMCLVWVACLLLAMAAEAEAQSYDYGSNNSAQTTSSHTMLLKLLGFVVSFLVLKEMV
Homology
BLAST of MS003159 vs. NCBI nr
Match:
KAA0037478.1 (hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK01954.1 hypothetical protein E5676_scaffold808G00460 [Cucumis melo var. makuwa])
HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 1 MGVQKCFGMCLVWVACLLLAMAAEAEAQSYDYGSNNSAQTTSSHTMLLKLLGFVVSFLVL 60 M +QKC GM L+WVACLL++ A EAEAQS YGS+++ + SH+ML+K LG +VSFLVL Sbjct: 1 MNLQKCLGMVLIWVACLLISTATEAEAQS--YGSSDAPEALCSHSMLVKFLGLLVSFLVL 60 Query: 61 KEMV 65 KE+V Sbjct: 61 KEIV 62
BLAST of MS003159 vs. NCBI nr
Match:
KAE8648896.1 (hypothetical protein Csa_008661 [Cucumis sativus])
HSP 1 Score: 53.5 bits (127), Expect = 7.7e-04
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query: 1 MGVQKCFGMCLVWVACLLLAMAAEAEAQSYDYGSNNSAQTTSSHTMLLKLLGFVVSFLVL 60 M ++KC GM L+WVACLL++MA EAEAQS YGS+++ + SH+ML F++ +VL Sbjct: 1 MDLRKCLGMVLIWVACLLVSMATEAEAQS--YGSSDAPEALHSHSMLFNSC-FIMRVVVL 57
BLAST of MS003159 vs. ExPASy TrEMBL
Match:
A0A5A7T3W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00460 PE=4 SV=1)
HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 1 MGVQKCFGMCLVWVACLLLAMAAEAEAQSYDYGSNNSAQTTSSHTMLLKLLGFVVSFLVL 60 M +QKC GM L+WVACLL++ A EAEAQS YGS+++ + SH+ML+K LG +VSFLVL Sbjct: 1 MNLQKCLGMVLIWVACLLISTATEAEAQS--YGSSDAPEALCSHSMLVKFLGLLVSFLVL 60 Query: 61 KEMV 65 KE+V Sbjct: 61 KEIV 62
BLAST of MS003159 vs. ExPASy TrEMBL
Match:
A0A0A0KS19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 3.4e-05
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 0
Query: 1 MGVQKCFGMCLVWVACLLLAMAAEAEAQSYDYGSNNSAQTTSSHTMLLK 50 M ++KC GM L+WVACLL++MA EAEAQS YGS+++ + SH+ML K Sbjct: 1 MDLRKCLGMVLIWVACLLVSMATEAEAQS--YGSSDAPEALHSHSMLFK 47
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0037478.1 3.2e-10 60.94 hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK0195... [more]
KAE8648896.1 7.7e-04 50.00 hypothetical protein Csa_008661 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7T3W0 1.6e-10 60.94 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KS19 3.4e-05 57.14 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T G G G T G T T C A G A A A T G T T T T G G T A T G T G T C T G G T T T G G G T T G C T T G T T T G C T T C T T G C C A T G G C T G C A G A A G C A G A A G C T C A G A G C T A T G A C T A T G G C T C C A A C A A T T C A G C T C A G A C C A C A T C T T C C C A C A C A A T G C T C C T C A A G T T G C T G G G T T T T G T T G T T T C T T T T C T G G T T C T C A A A G A G A T G G T T 20 40 60 80 100 120 140 160 180 Score = 5.0 Sequence PS51257
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PROSITE PS51257 PROKAR_LIPOPROTEIN coord: 1..16 score: 5.0
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS003159.1 MS003159.1 mRNA