MS003154 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GTTCCTCAATCCCAATCCCCCGACCTCTCCTCCGACGAAAATGGCTTCCACCACGCCGACGACCTTCACGAATCGGCCTTCGCCAGCCGCAGCTGCTGCCTCTGGCTCCCTTGCCTGAGGTCCAATCCCTCGCAGGCCGGCTCCATGTGGTGGGAGCGGATCCGCACCTCCGAGCACGACGACGACTGGTGGCTCAGGGGCTGGAGGAGGATCCGAGAATGGTCCGAGATCGTCGCCGGCCCCAAATGGAAGACCTTCATCCGTCAATTCAACAAGAGCCCTCGCAATCGCCAATCCACCTTCCGCTACGACCCTCTCAGCTATTCTCTCAATTTCGATGAAGGTCCCGTCCGCGACGATCCTTTCTACGAAGACCATAAGCGCCGCGATTTCTCCACTCGCTTTGCTGCCATGCCGTCATCCGCTAAATCCTCCATGGACCTCGGCAAGGACGGGCTCTCCTTCATA GTTCCTCAATCCCAATCCCCCGACCTCTCCTCCGACGAAAATGGCTTCCACCACGCCGACGACCTTCACGAATCGGCCTTCGCCAGCCGCAGCTGCTGCCTCTGGCTCCCTTGCCTGAGGTCCAATCCCTCGCAGGCCGGCTCCATGTGGTGGGAGCGGATCCGCACCTCCGAGCACGACGACGACTGGTGGCTCAGGGGCTGGAGGAGGATCCGAGAATGGTCCGAGATCGTCGCCGGCCCCAAATGGAAGACCTTCATCCGTCAATTCAACAAGAGCCCTCGCAATCGCCAATCCACCTTCCGCTACGACCCTCTCAGCTATTCTCTCAATTTCGATGAAGGTCCCGTCCGCGACGATCCTTTCTACGAAGACCATAAGCGCCGCGATTTCTCCACTCGCTTTGCTGCCATGCCGTCATCCGCTAAATCCTCCATGGACCTCGGCAAGGACGGGCTCTCCTTCATA GTTCCTCAATCCCAATCCCCCGACCTCTCCTCCGACGAAAATGGCTTCCACCACGCCGACGACCTTCACGAATCGGCCTTCGCCAGCCGCAGCTGCTGCCTCTGGCTCCCTTGCCTGAGGTCCAATCCCTCGCAGGCCGGCTCCATGTGGTGGGAGCGGATCCGCACCTCCGAGCACGACGACGACTGGTGGCTCAGGGGCTGGAGGAGGATCCGAGAATGGTCCGAGATCGTCGCCGGCCCCAAATGGAAGACCTTCATCCGTCAATTCAACAAGAGCCCTCGCAATCGCCAATCCACCTTCCGCTACGACCCTCTCAGCTATTCTCTCAATTTCGATGAAGGTCCCGTCCGCGACGATCCTTTCTACGAAGACCATAAGCGCCGCGATTTCTCCACTCGCTTTGCTGCCATGCCGTCATCCGCTAAATCCTCCATGGACCTCGGCAAGGACGGGCTCTCCTTCATA VPQSQSPDLSSDENGFHHADDLHESAFASRSCCLWLPCLRSNPSQAGSMWWERIRTSEHDDDWWLRGWRRIREWSEIVAGPKWKTFIRQFNKSPRNRQSTFRYDPLSYSLNFDEGPVRDDPFYEDHKRRDFSTRFAAMPSSAKSSMDLGKDGLSFI Homology
BLAST of MS003154 vs. NCBI nr
Match: XP_022134303.1 (uncharacterized protein LOC111006597 [Momordica charantia]) HSP 1 Score: 333.6 bits (854), Expect = 9.3e-88 Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
BLAST of MS003154 vs. NCBI nr
Match: XP_038889212.1 (uncharacterized protein LOC120079097 [Benincasa hispida]) HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64 Identity = 121/153 (79.08%), Postives = 135/153 (88.24%), Query Frame = 0
BLAST of MS003154 vs. NCBI nr
Match: XP_031741765.1 (uncharacterized protein LOC116403956 [Cucumis sativus] >KGN52385.1 hypothetical protein Csa_008790 [Cucumis sativus]) HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63 Identity = 117/153 (76.47%), Postives = 134/153 (87.58%), Query Frame = 0
BLAST of MS003154 vs. NCBI nr
Match: KAG6602448.1 (hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033131.1 hypothetical protein SDJN02_07184, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62 Identity = 117/153 (76.47%), Postives = 134/153 (87.58%), Query Frame = 0
BLAST of MS003154 vs. NCBI nr
Match: XP_022990588.1 (uncharacterized protein LOC111487422 [Cucurbita maxima]) HSP 1 Score: 248.1 bits (632), Expect = 5.2e-62 Identity = 116/153 (75.82%), Postives = 133/153 (86.93%), Query Frame = 0
BLAST of MS003154 vs. ExPASy TrEMBL
Match: A0A6J1C1N0 (uncharacterized protein LOC111006597 OS=Momordica charantia OX=3673 GN=LOC111006597 PE=4 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 4.5e-88 Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
BLAST of MS003154 vs. ExPASy TrEMBL
Match: A0A0A0KRY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63 Identity = 117/153 (76.47%), Postives = 134/153 (87.58%), Query Frame = 0
BLAST of MS003154 vs. ExPASy TrEMBL
Match: A0A6J1JTQ3 (uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62 Identity = 116/153 (75.82%), Postives = 133/153 (86.93%), Query Frame = 0
BLAST of MS003154 vs. ExPASy TrEMBL
Match: A0A6J1HFG4 (uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC111462557 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62 Identity = 116/152 (76.32%), Postives = 133/152 (87.50%), Query Frame = 0
BLAST of MS003154 vs. ExPASy TrEMBL
Match: A0A1S4E267 (uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 9.8e-59 Identity = 111/153 (72.55%), Postives = 130/153 (84.97%), Query Frame = 0
BLAST of MS003154 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32 Identity = 73/163 (44.79%), Postives = 97/163 (59.51%), Query Frame = 0
BLAST of MS003154 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein ) HSP 1 Score: 135.2 bits (339), Expect = 4.5e-32 Identity = 72/150 (48.00%), Postives = 93/150 (62.00%), Query Frame = 0
BLAST of MS003154 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). ) HSP 1 Score: 101.7 bits (252), Expect = 5.6e-22 Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 0
BLAST of MS003154 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 101.3 bits (251), Expect = 7.3e-22 Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 0
BLAST of MS003154 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 7.8e-08 Identity = 37/106 (34.91%), Postives = 50/106 (47.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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