![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS003150 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCTGTGGATTGTGCTGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTTGGTCACTCCTATTTGTCCTATTTGTCGGACCAATACTCTTGAGTCGCTC CCTGTGGATTGTGCTGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTTGGTCACTCCTATTTGTCCTATTTGTCGGACCAATACTCTTGAGTCGCTC CCTGTGGATTGTGCTGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTTGGTCACTCCTATTTGTCCTATTTGTCGGACCAATACTCTTGAGTCGCTC PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL Homology
BLAST of MS003150 vs. NCBI nr
Match: XP_022134384.1 (E3 ubiquitin-protein ligase ATL4-like [Momordica charantia]) HSP 1 Score: 123.2 bits (308), Expect = 6.5e-25 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
BLAST of MS003150 vs. NCBI nr
Match: KAG6578641.1 (putative RING-H2 finger protein ATL50, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016181.1 putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21 Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of MS003150 vs. NCBI nr
Match: XP_023551528.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21 Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 0
BLAST of MS003150 vs. NCBI nr
Match: KAE8021557.1 (hypothetical protein FH972_007437 [Carpinus fangiana]) HSP 1 Score: 99.8 bits (247), Expect = 7.7e-18 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of MS003150 vs. NCBI nr
Match: CAB4305566.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17 Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0
BLAST of MS003150 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 1.0e-12 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0
BLAST of MS003150 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 1.0e-12 Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of MS003150 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.7e-12 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of MS003150 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2) HSP 1 Score: 70.5 bits (171), Expect = 6.6e-12 Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
BLAST of MS003150 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.1e-11 Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0
BLAST of MS003150 vs. ExPASy TrEMBL
Match: A0A6J1BYM3 (E3 ubiquitin-protein ligase ATL4-like OS=Momordica charantia OX=3673 GN=LOC111006656 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.2e-25 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
BLAST of MS003150 vs. ExPASy TrEMBL
Match: A0A5N6QVF9 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007437 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of MS003150 vs. ExPASy TrEMBL
Match: A0A2N9ED16 (RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS517 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18 Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
BLAST of MS003150 vs. ExPASy TrEMBL
Match: A0A314Z383 (RING-H2 finger protein ATL39-like OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_33532 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.9e-18 Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0
BLAST of MS003150 vs. ExPASy TrEMBL
Match: A0A6P5SSW5 (RING-H2 finger protein ATL39-like OS=Prunus avium OX=42229 GN=LOC110761670 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.9e-18 Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0
BLAST of MS003150 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14 Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of MS003150 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14 Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of MS003150 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0
BLAST of MS003150 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 1.2e-13 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of MS003150 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13 Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|