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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AATTTAAATCCAAACGGGTGCGTGCTTTGTTGCTCCTCGGTTGAAACTTTGGACCACTTGTTTCTCCACTGCCCTTTCTTCACTGCTGCCTTGTGGAACATGCTCTTCTTAACTTTCAAGGTTTCTTTTGTTTTGCCTGGTCGTATT mRNA sequence AATTTAAATCCAAACGGGTGCGTGCTTTGTTGCTCCTCGGTTGAAACTTTGGACCACTTGTTTCTCCACTGCCCTTTCTTCACTGCTGCCTTGTGGAACATGCTCTTCTTAACTTTCAAGGTTTCTTTTGTTTTGCCTGGTCGTATT Coding sequence (CDS) AATTTAAATCCAAACGGGTGCGTGCTTTGTTGCTCCTCGGTTGAAACTTTGGACCACTTGTTTCTCCACTGCCCTTTCTTCACTGCTGCCTTGTGGAACATGCTCTTCTTAACTTTCAAGGTTTCTTTTGTTTTGCCTGGTCGTATT Protein sequence NLNPNGCVLCCSSVETLDHLFLHCPFFTAALWNMLFLTFKVSFVLPGRI
Homology
BLAST of MS003145 vs. NCBI nr
Match: RVW54844.1 (Protein HUA2-like 3 [Vitis vinifera]) HSP 1 Score: 53.1 bits (126), Expect = 7.7e-04 Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 4 PNGCVLCCSSVETLDHLFLHCPFFTAALWNMLFLTFKVSFVLPGRI 50 PN C+LCC++ ET+DHL +HC + LW++LF F V +VLP + Sbjct: 125 PNRCLLCCAADETIDHLLIHCT-KSKVLWDLLFTLFSVQWVLPSSV 169
BLAST of MS003145 vs. ExPASy TrEMBL
Match: A0A2N9J1L9 (KEN domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59319 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04 Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0 Query: 5 NGCVLCCSSVETLDHLFLHCPFFTAALWNMLFLTFKVSFVLPGRI 50 N C LCCS+ ET+DHL LHCP + LW LF +F VS+V+P + Sbjct: 791 NRCCLCCSNGETVDHLLLHCP-ISHVLWTFLFRSFHVSWVIPRNV 834
BLAST of MS003145 vs. ExPASy TrEMBL
Match: A0A2N9F696 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10530 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.7e-04 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0 Query: 7 CVLCCSSVETLDHLFLHCPFFTAALWNMLFLTFKVSFVLP 47 C LCCS+ ET+DHL LHCP + LWN LF +F VS+V+P Sbjct: 1288 CCLCCSNGETVDHLLLHCP-VSHVLWNFLFRSFHVSWVIP 1326
BLAST of MS003145 vs. ExPASy TrEMBL
Match: A0A2N9IH13 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51262 PE=4 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 6.3e-04 Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 0 Query: 7 CVLCCSSVETLDHLFLHCPFFTAALWNMLFLTFKVSFVLPGRI 50 C +CCSS ET+DHL +HCP +ALW+ +F TF V +V+ G + Sbjct: 380 CCMCCSSGETVDHLLIHCP-MASALWSWVFQTFGVQWVMSGTV 421
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW54844.1 | 7.7e-04 | 47.83 | Protein HUA2-like 3 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9J1L9 | 2.2e-04 | 53.33 | KEN domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59319 PE=4... | [more] |
A0A2N9F696 | 3.7e-04 | 60.00 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10530 PE=4 SV=1 | [more] |
A0A2N9IH13 | 6.3e-04 | 51.16 | zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51262 P... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS003145.1 | MS003145.1 | mRNA |
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