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MS003136 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCTCGCCCTTCGCCGGCGAGACCCACGCGGCGGCGCAGATTCGCCGTGGACGACGGCGCCGATCTAATCGACTGCTCCGGCAAGCATTGCCGGTCGTGCACCGCCGGCTTGATCGCCGACTGCGTCGCCGTCTGCTGCTGCCCCTGCTCTGTGGTCAGCTTCCTGGCTCTGGCTCTGGTCAAACTGCCGTGGATGGTCGGCCGGAGGACCCTGCAGCACGCCAGGAAGAAGTGGAAGATGAAATCCCTCCGCCGGAGAGGGGAAGTCGACGGCGGCCCTGCGGCAAACACAGGTGGCACTCCGGCGAAAAGGGATGAAAAAATGCCGGAAATTTCGCCGGCGTTCGGCGGCGAACAAGCAGAGACAGGGAATTTGAGTGCGAGATTTGAAGCAGAGAGAATATGGTTGCAATTGTATCAGGTTGGTCAATTGGGTTTTGGAAGAGTTTCCTTCACTGGGAATTCAAGTCTCAAT TCTCGCCCTTCGCCGGCGAGACCCACGCGGCGGCGCAGATTCGCCGTGGACGACGGCGCCGATCTAATCGACTGCTCCGGCAAGCATTGCCGGTCGTGCACCGCCGGCTTGATCGCCGACTGCGTCGCCGTCTGCTGCTGCCCCTGCTCTGTGGTCAGCTTCCTGGCTCTGGCTCTGGTCAAACTGCCGTGGATGGTCGGCCGGAGGACCCTGCAGCACGCCAGGAAGAAGTGGAAGATGAAATCCCTCCGCCGGAGAGGGGAAGTCGACGGCGGCCCTGCGGCAAACACAGGTGGCACTCCGGCGAAAAGGGATGAAAAAATGCCGGAAATTTCGCCGGCGTTCGGCGGCGAACAAGCAGAGACAGGGAATTTGAGTGCGAGATTTGAAGCAGAGAGAATATGGTTGCAATTGTATCAGGTTGGTCAATTGGGTTTTGGAAGAGTTTCCTTCACTGGGAATTCAAGTCTCAAT TCTCGCCCTTCGCCGGCGAGACCCACGCGGCGGCGCAGATTCGCCGTGGACGACGGCGCCGATCTAATCGACTGCTCCGGCAAGCATTGCCGGTCGTGCACCGCCGGCTTGATCGCCGACTGCGTCGCCGTCTGCTGCTGCCCCTGCTCTGTGGTCAGCTTCCTGGCTCTGGCTCTGGTCAAACTGCCGTGGATGGTCGGCCGGAGGACCCTGCAGCACGCCAGGAAGAAGTGGAAGATGAAATCCCTCCGCCGGAGAGGGGAAGTCGACGGCGGCCCTGCGGCAAACACAGGTGGCACTCCGGCGAAAAGGGATGAAAAAATGCCGGAAATTTCGCCGGCGTTCGGCGGCGAACAAGCAGAGACAGGGAATTTGAGTGCGAGATTTGAAGCAGAGAGAATATGGTTGCAATTGTATCAGGTTGGTCAATTGGGTTTTGGAAGAGTTTCCTTCACTGGGAATTCAAGTCTCAAT SRPSPARPTRRRRFAVDDGADLIDCSGKHCRSCTAGLIADCVAVCCCPCSVVSFLALALVKLPWMVGRRTLQHARKKWKMKSLRRRGEVDGGPAANTGGTPAKRDEKMPEISPAFGGEQAETGNLSARFEAERIWLQLYQVGQLGFGRVSFTGNSSLN Homology
BLAST of MS003136 vs. NCBI nr
Match: XP_022134219.1 (uncharacterized protein LOC111006530 [Momordica charantia] >XP_022134220.1 uncharacterized protein LOC111006530 [Momordica charantia]) HSP 1 Score: 318.2 bits (814), Expect = 4.1e-83 Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0
BLAST of MS003136 vs. NCBI nr
Match: XP_038891069.1 (uncharacterized protein LOC120080480 [Benincasa hispida]) HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60 Identity = 125/155 (80.65%), Postives = 133/155 (85.81%), Query Frame = 0
BLAST of MS003136 vs. NCBI nr
Match: XP_008458773.1 (PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >XP_008458774.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo] >KAA0037530.1 uncharacterized protein E6C27_scaffold277G001430 [Cucumis melo var. makuwa] >TYK02005.1 uncharacterized protein E5676_scaffold808G001190 [Cucumis melo var. makuwa]) HSP 1 Score: 238.4 bits (607), Expect = 4.1e-59 Identity = 124/155 (80.00%), Postives = 131/155 (84.52%), Query Frame = 0
BLAST of MS003136 vs. NCBI nr
Match: XP_011655414.1 (uncharacterized protein LOC105435525 [Cucumis sativus]) HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57 Identity = 121/155 (78.06%), Postives = 130/155 (83.87%), Query Frame = 0
BLAST of MS003136 vs. NCBI nr
Match: KGN51853.2 (hypothetical protein Csa_008870 [Cucumis sativus]) HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57 Identity = 121/155 (78.06%), Postives = 130/155 (83.87%), Query Frame = 0
BLAST of MS003136 vs. ExPASy TrEMBL
Match: A0A6J1BXL5 (uncharacterized protein LOC111006530 OS=Momordica charantia OX=3673 GN=LOC111006530 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83 Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0
BLAST of MS003136 vs. ExPASy TrEMBL
Match: A0A1S3C8M3 (uncharacterized protein LOC103498078 OS=Cucumis melo OX=3656 GN=LOC103498078 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59 Identity = 124/155 (80.00%), Postives = 131/155 (84.52%), Query Frame = 0
BLAST of MS003136 vs. ExPASy TrEMBL
Match: A0A5A7T2E5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001190 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59 Identity = 124/155 (80.00%), Postives = 131/155 (84.52%), Query Frame = 0
BLAST of MS003136 vs. ExPASy TrEMBL
Match: A0A0A0KR58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524770 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 6.5e-58 Identity = 121/155 (78.06%), Postives = 130/155 (83.87%), Query Frame = 0
BLAST of MS003136 vs. ExPASy TrEMBL
Match: A0A6J1JH40 (uncharacterized protein LOC111486958 OS=Cucurbita maxima OX=3661 GN=LOC111486958 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53 Identity = 114/162 (70.37%), Postives = 126/162 (77.78%), Query Frame = 0
BLAST of MS003136 vs. TAIR 10
Match: AT5G14690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 115.5 bits (288), Expect = 3.8e-26 Identity = 70/188 (37.23%), Postives = 96/188 (51.06%), Query Frame = 0
BLAST of MS003136 vs. TAIR 10
Match: AT3G01516.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 110.9 bits (276), Expect = 9.3e-25 Identity = 67/152 (44.08%), Postives = 88/152 (57.89%), Query Frame = 0
BLAST of MS003136 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04 Identity = 28/83 (33.73%), Postives = 44/83 (53.01%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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