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MS003122 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAACGAAAATGGTTGGCCCATCTTCCCCAAAGATCCTTCCTTCTCTACAAATTTTCTCAGTGAAGTCCTCGTCTTCTTCAACCTTAATTTTTGTGAAGTTCAAAACTTTCCTCCACACTCTCATCTTCTCGCACCTATGTCGATTGGCTCGAGCGATCTCCCGAGCCAAGTCGACCGTGGTTCACATCGTGAAGGAGAGTTATCATAGCAAGAACAAGAGCAAGAACAAGATCTTCTTTGGATCCTTTAGACTCCACTACAATTGGTGTTCTTCCCACGTGATGCCGGTTCCCGCCCCGGTGTTGGAAGGCCATTTCTACTATGACTCCACGTGGAACTCGCTCATTTCTGAAGGCGAACTACGGAAAGGAGGTATGTTAAATTATCACTAAACCCTTAACTTCAACAAATTTAACTTTTTTTTGTAGGTTTCAAATAGCCTAAGTGATAGATTACGATAAATTTAATTTTTTTTTATATTTTCAGTCGGAGGTGCGGTGGATAGCCCGCAGCTGTCGGGGTATCTACAGTGGCTGGAGGAGAGAAAAATTGGAGGGAATAATTTGAGGGGGGAAAGTGAAGGGGAAATGAATGAGATTGACAAATTGGCAGAGATGTTCATAGCCAGCTGCCATGAGAAGTTCAGGCTGGAGAAACAGGAGTCCTATAGGAGATTTCAGGAGATGATGGCCAGAAGCATG AAAACGAAAATGGTTGGCCCATCTTCCCCAAAGATCCTTCCTTCTCTACAAATTTTCTCAGTGAAGTCCTCGTCTTCTTCAACCTTAATTTTTGTGAAGTTCAAAACTTTCCTCCACACTCTCATCTTCTCGCACCTATGTCGATTGGCTCGAGCGATCTCCCGAGCCAAGTCGACCGTGGTTCACATCGTGAAGGAGAGTTATCATAGCAAGAACAAGAGCAAGAACAAGATCTTCTTTGGATCCTTTAGACTCCACTACAATTGGTGTTCTTCCCACGTGATGCCGGTTCCCGCCCCGGTGTTGGAAGGCCATTTCTACTATGACTCCACCCCGCAGCTGTCGGGGTATCTACAGTGGCTGGAGGAGAGAAAAATTGGAGGGAATAATTTGAGGGGGGAAAGTGAAGGGGAAATGAATGAGATTGACAAATTGGCAGAGATGTTCATAGCCAGCTGCCATGAGAAGTTCAGGCTGGAGAAACAGGAGTCCTATAGGAGATTTCAGGAGATGATGGCCAGAAGCATG AAAACGAAAATGGTTGGCCCATCTTCCCCAAAGATCCTTCCTTCTCTACAAATTTTCTCAGTGAAGTCCTCGTCTTCTTCAACCTTAATTTTTGTGAAGTTCAAAACTTTCCTCCACACTCTCATCTTCTCGCACCTATGTCGATTGGCTCGAGCGATCTCCCGAGCCAAGTCGACCGTGGTTCACATCGTGAAGGAGAGTTATCATAGCAAGAACAAGAGCAAGAACAAGATCTTCTTTGGATCCTTTAGACTCCACTACAATTGGTGTTCTTCCCACGTGATGCCGGTTCCCGCCCCGGTGTTGGAAGGCCATTTCTACTATGACTCCACCCCGCAGCTGTCGGGGTATCTACAGTGGCTGGAGGAGAGAAAAATTGGAGGGAATAATTTGAGGGGGGAAAGTGAAGGGGAAATGAATGAGATTGACAAATTGGCAGAGATGTTCATAGCCAGCTGCCATGAGAAGTTCAGGCTGGAGAAACAGGAGTCCTATAGGAGATTTCAGGAGATGATGGCCAGAAGCATG KTKMVGPSSPKILPSLQIFSVKSSSSSTLIFVKFKTFLHTLIFSHLCRLARAISRAKSTVVHIVKESYHSKNKSKNKIFFGSFRLHYNWCSSHVMPVPAPVLEGHFYYDSTPQLSGYLQWLEERKIGGNNLRGESEGEMNEIDKLAEMFIASCHEKFRLEKQESYRRFQEMMARSM Homology
BLAST of MS003122 vs. NCBI nr
Match: XP_022134094.1 (uncharacterized protein LOC111006449 [Momordica charantia]) HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86 Identity = 171/193 (88.60%), Postives = 172/193 (89.12%), Query Frame = 0
BLAST of MS003122 vs. NCBI nr
Match: KAG7033099.1 (hypothetical protein SDJN02_07152, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265.0 bits (676), Expect = 4.6e-67 Identity = 137/179 (76.54%), Postives = 152/179 (84.92%), Query Frame = 0
BLAST of MS003122 vs. NCBI nr
Match: XP_022961611.1 (uncharacterized protein LOC111462262 [Cucurbita moschata] >KAG6602421.1 hypothetical protein SDJN03_07654, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 265.0 bits (676), Expect = 4.6e-67 Identity = 137/179 (76.54%), Postives = 152/179 (84.92%), Query Frame = 0
BLAST of MS003122 vs. NCBI nr
Match: XP_023548199.1 (uncharacterized protein LOC111806908 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548209.1 uncharacterized protein LOC111806908 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 264.6 bits (675), Expect = 6.0e-67 Identity = 137/180 (76.11%), Postives = 152/180 (84.44%), Query Frame = 0
BLAST of MS003122 vs. NCBI nr
Match: XP_038890518.1 (uncharacterized protein LOC120080048 [Benincasa hispida]) HSP 1 Score: 261.5 bits (667), Expect = 5.1e-66 Identity = 138/181 (76.24%), Postives = 152/181 (83.98%), Query Frame = 0
BLAST of MS003122 vs. ExPASy TrEMBL
Match: A0A6J1BXU0 (uncharacterized protein LOC111006449 OS=Momordica charantia OX=3673 GN=LOC111006449 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86 Identity = 171/193 (88.60%), Postives = 172/193 (89.12%), Query Frame = 0
BLAST of MS003122 vs. ExPASy TrEMBL
Match: A0A6J1HAU6 (uncharacterized protein LOC111462262 OS=Cucurbita moschata OX=3662 GN=LOC111462262 PE=4 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 2.2e-67 Identity = 137/179 (76.54%), Postives = 152/179 (84.92%), Query Frame = 0
BLAST of MS003122 vs. ExPASy TrEMBL
Match: A0A0A0KP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523130 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 7.2e-66 Identity = 138/182 (75.82%), Postives = 150/182 (82.42%), Query Frame = 0
BLAST of MS003122 vs. ExPASy TrEMBL
Match: A0A6J1JV22 (uncharacterized protein LOC111487754 OS=Cucurbita maxima OX=3661 GN=LOC111487754 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 4.6e-65 Identity = 134/179 (74.86%), Postives = 149/179 (83.24%), Query Frame = 0
BLAST of MS003122 vs. ExPASy TrEMBL
Match: A0A5D3BVA7 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00500 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64 Identity = 136/183 (74.32%), Postives = 148/183 (80.87%), Query Frame = 0
BLAST of MS003122 vs. TAIR 10
Match: AT3G57950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32 Identity = 83/179 (46.37%), Postives = 111/179 (62.01%), Query Frame = 0
BLAST of MS003122 vs. TAIR 10
Match: AT5G06790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 123.2 bits (308), Expect = 2.0e-28 Identity = 83/200 (41.50%), Postives = 107/200 (53.50%), Query Frame = 0
BLAST of MS003122 vs. TAIR 10
Match: AT2G42180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 7.7e-20 Identity = 75/179 (41.90%), Postives = 99/179 (55.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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