MS003087 (gene) Bitter gourd (TR) v1

Overview


Name	MS003087
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small polypeptide DEVIL 11
Location	scaffold234: 344776 .. 345027 (+)
RNA-Seq Expression	MS003087
Synteny	MS003087

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTGGTTGCTGCTGCTGCTGATCCCCCCGGCCCCGGCACCGGCACCGGCAGCGGCCCCTTCTACTTCCATGACAAATGGAAGATGTCCAAGAAAGACCGCTCCTCCAACTCCAACTCCAACTCCCACAGGAGGTGCTCCTTCACCAGAAAGTGCGCCCGATTGGTCAAGGAGCAGAGGGCCAGATTCTACATCATGCGCCGCTGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCT

mRNA sequence

ATGGCTTCCCTGGTTGCTGCTGCTGCTGATCCCCCCGGCCCCGGCACCGGCACCGGCAGCGGCCCCTTCTACTTCCATGACAAATGGAAGATGTCCAAGAAAGACCGCTCCTCCAACTCCAACTCCAACTCCCACAGGAGGTGCTCCTTCACCAGAAAGTGCGCCCGATTGGTCAAGGAGCAGAGGGCCAGATTCTACATCATGCGCCGCTGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCT

Coding sequence (CDS)

ATGGCTTCCCTGGTTGCTGCTGCTGCTGATCCCCCCGGCCCCGGCACCGGCACCGGCAGCGGCCCCTTCTACTTCCATGACAAATGGAAGATGTCCAAGAAAGACCGCTCCTCCAACTCCAACTCCAACTCCCACAGGAGGTGCTCCTTCACCAGAAAGTGCGCCCGATTGGTCAAGGAGCAGAGGGCCAGATTCTACATCATGCGCCGCTGCGTCACCATGCTCATCTGCTGGCACGATTACACCGATTCT

Protein sequence

MASLVAAAADPPGPGTGTGSGPFYFHDKWKMSKKDRSSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS

Homology

[Close]

BLAST of MS003087 vs. NCBI nr
Match: KGN51326.1 (hypothetical protein Csa_009192 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-22
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MASLVAAAADPPGPGTGTGSGPFYFHDKWKMSKKD---RSSNSNS------NSHRRCSFT 60
          MAS+V A A      T     PFYF +KWK SKK+   RS+ S+S      +SHRRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of MS003087 vs. NCBI nr
Match: KAF3433679.1 (hypothetical protein FNV43_RR24782 [Rhamnella rubrinervis])

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-21
Identity = 60/93 (64.52%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 2  ASLVAAAADPPGPGTG-TGSGPFYFHDKWKMSKKDRSSNS---------NSNSHRRCSFT 61
          +S  AAAA    PG       PFYF +KWK+SKK+ SS S         NS+SHRRCSFT
Sbjct: 6  SSTAAAAASAVSPGNAHPPPPPFYFDEKWKLSKKEASSRSRSSTCPLMKNSSSHRRCSFT 65

Query: 62 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          RKCARLVKEQRARFYI+RRCVTMLICW DY+DS
Sbjct: 66 RKCARLVKEQRARFYIVRRCVTMLICWRDYSDS 98

[Close]

BLAST of MS003087 vs. NCBI nr
Match: XP_022938385.1 (uncharacterized protein LOC111444651 [Cucurbita moschata] >KAG6578688.1 hypothetical protein SDJN03_23136, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016227.1 hypothetical protein SDJN02_21333, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MASLVAAAADPPGPGTGTGSGP-FYFHDKWKMSKKD-----RSSN---SNSNSHRRCSFT 60
          MASLV A A      T T + P FYF DKWK SKK+     RSS+     ++SHRRCSFT
Sbjct: 1  MASLVGATA-TASTATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 92

[Close]

BLAST of MS003087 vs. NCBI nr
Match: KAE7996759.1 (hypothetical protein FH972_001452 [Carpinus fangiana])

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 16 TGTGSGPFYFHDKWKMSKKDRSSNS--------NSNSHRRCSFTRKCARLVKEQRARFYI 75
          T +G  PFYF +KWK+SKK+ SS S         S+SHRRCSF RKCARLVKEQRARFYI
Sbjct: 9  TASGPPPFYFDEKWKLSKKEGSSRSRSSTAPFMKSSSHRRCSFARKCARLVKEQRARFYI 68

Query: 76 MRRCVTMLICWHDYTDS 85
          +RRCVTMLICW DY+DS
Sbjct: 69 VRRCVTMLICWRDYSDS 85

[Close]

BLAST of MS003087 vs. NCBI nr
Match: KAB1217849.1 (hypothetical protein CJ030_MR3G014741 [Morella rubra])

HSP 1 Score: 107.5 bits (267), Expect = 5.9e-20
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 22 PFYFHDKWKMSKKDRSSNS--------NSNSHRRCSFTRKCARLVKEQRARFYIMRRCVT 81
          PFYF +KWK+SKK+ SS S         S+SHRRCSFTRKCARLVKEQRARFYIMRRCVT
Sbjct: 15 PFYFDEKWKLSKKEGSSRSRSSTTPFMKSSSHRRCSFTRKCARLVKEQRARFYIMRRCVT 74

Query: 82 MLICWHDYTDS 85
          MLICW DY DS
Sbjct: 75 MLICWRDYGDS 85

[Close]

BLAST of MS003087 vs. ExPASy Swiss-Prot
Match: Q8S8S3 (Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.2e-17
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 18 TGSGPFYFHDKWKMSKKD-------RSSNSNSNSHR-----RCSFTRKCARLVKEQRARF 77
          T SG  +  +KWK+SKKD       RSS+++S+S       RC+FTRKCARLVKEQRARF
Sbjct: 8  TRSGSVHLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARF 67

Query: 78 YIMRRCVTMLICWHD-YTDS 85
          YIMRRCV MLICW D Y+DS
Sbjct: 68 YIMRRCVIMLICWRDNYSDS 87

[Close]

BLAST of MS003087 vs. ExPASy Swiss-Prot
Match: Q6IM93 (Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-09
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 37 SSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          ++ S+     +  FTRKC RLVKEQRARFYIMRRCV MLICW D+ ++
Sbjct: 27 TTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNNN 74

[Close]

BLAST of MS003087 vs. ExPASy Swiss-Prot
Match: Q8L7D0 (Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 32  SKKDRSSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
           S+K+R S+S+S+S    S T+K + L KEQ+ARFYIMRRCV ML+CWH + DS
Sbjct: 67  SRKERRSSSSSSS----SITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

[Close]

BLAST of MS003087 vs. ExPASy Swiss-Prot
Match: Q7XXN8 (Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-07
Identity = 20/32 (62.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 49 SFTRKCARLVKEQRARFYIMRRCVTMLICWHD 81
          +F +KC+ +VK+QRA+FYI+RRC+ ML+CWHD
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]

BLAST of MS003087 vs. ExPASy Swiss-Prot
Match: Q8LE84 (Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-07
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 32  SKKDRSSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDY 82
           S   + S S S S +  S TRKC  + KE ++RFYIM+RCV ML+CWH +
Sbjct: 91  SSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of MS003087 vs. ExPASy TrEMBL
Match: A0A0A0KUB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517730 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MASLVAAAADPPGPGTGTGSGPFYFHDKWKMSKKD---RSSNSNS------NSHRRCSFT 60
          MAS+V A A      T     PFYF +KWK SKK+   RS+ S+S      +SHRRCSFT
Sbjct: 1  MASIVGATATTTTSTTTPTDPPFYFDEKWKFSKKEGLNRSTRSSSFPIIKNSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 93

[Close]

BLAST of MS003087 vs. ExPASy TrEMBL
Match: A0A6J1FJM7 (uncharacterized protein LOC111444651 OS=Cucurbita moschata OX=3662 GN=LOC111444651 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 62/93 (66.67%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MASLVAAAADPPGPGTGTGSGP-FYFHDKWKMSKKD-----RSSN---SNSNSHRRCSFT 60
          MASLV A A      T T + P FYF DKWK SKK+     RSS+     ++SHRRCSFT
Sbjct: 1  MASLVGATA-TASTATATATDPSFYFDDKWKTSKKEGLTRTRSSSFPLIKTSSHRRCSFT 60

Query: 61 RKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          RKCARLV++QRARFYIMRRCVTMLICWHDYTDS
Sbjct: 61 RKCARLVEQQRARFYIMRRCVTMLICWHDYTDS 92

[Close]

BLAST of MS003087 vs. ExPASy TrEMBL
Match: A0A5N6QDM8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001452 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 16 TGTGSGPFYFHDKWKMSKKDRSSNS--------NSNSHRRCSFTRKCARLVKEQRARFYI 75
          T +G  PFYF +KWK+SKK+ SS S         S+SHRRCSF RKCARLVKEQRARFYI
Sbjct: 9  TASGPPPFYFDEKWKLSKKEGSSRSRSSTAPFMKSSSHRRCSFARKCARLVKEQRARFYI 68

Query: 76 MRRCVTMLICWHDYTDS 85
          +RRCVTMLICW DY+DS
Sbjct: 69 VRRCVTMLICWRDYSDS 85

[Close]

BLAST of MS003087 vs. ExPASy TrEMBL
Match: A0A6A1VY14 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G014741 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.8e-20
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 22 PFYFHDKWKMSKKDRSSNS--------NSNSHRRCSFTRKCARLVKEQRARFYIMRRCVT 81
          PFYF +KWK+SKK+ SS S         S+SHRRCSFTRKCARLVKEQRARFYIMRRCVT
Sbjct: 15 PFYFDEKWKLSKKEGSSRSRSSTTPFMKSSSHRRCSFTRKCARLVKEQRARFYIMRRCVT 74

Query: 82 MLICWHDYTDS 85
          MLICW DY DS
Sbjct: 75 MLICWRDYGDS 85

[Close]

BLAST of MS003087 vs. ExPASy TrEMBL
Match: A0A498JFM7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_024162 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.3e-20
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 22 PFYFHDKWKMSKKDRSSNS------------NSNSHRRCSFTRKCARLVKEQRARFYIMR 81
          PFYF +KWK+SKK+ SS S            +S S+RRCSF+RKCARLVKEQRARFYIMR
Sbjct: 25 PFYFDEKWKLSKKEGSSRSSRSSSSIHLMKNSSRSNRRCSFSRKCARLVKEQRARFYIMR 84

Query: 82 RCVTMLICWHDYTDS 85
          RCVTMLICWHDY+DS
Sbjct: 85 RCVTMLICWHDYSDS 99

[Close]

BLAST of MS003087 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 18 TGSGPFYFHDKWKMSKKD-------RSSNSNSNSHR-----RCSFTRKCARLVKEQRARF 77
          T SG  +  +KWK+SKKD       RSS+++S+S       RC+FTRKCARLVKEQRARF
Sbjct: 8  TRSGSVHLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARF 67

Query: 78 YIMRRCVTMLICWHD-YTDS 85
          YIMRRCV MLICW D Y+DS
Sbjct: 68 YIMRRCVIMLICWRDNYSDS 87

[Close]

BLAST of MS003087 vs. TAIR 10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7 )

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 37 SSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
          ++ S+     +  FTRKC RLVKEQRARFYIMRRCV MLICW D+ ++
Sbjct: 27 TTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNNN 74

[Close]

BLAST of MS003087 vs. TAIR 10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2 )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 32  SKKDRSSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDYTDS 85
           S+K+R S+S+S+S    S T+K + L KEQ+ARFYIMRRCV ML+CWH + DS
Sbjct: 67  SRKERRSSSSSSS----SITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

[Close]

BLAST of MS003087 vs. TAIR 10
Match: AT2G36985.1 (DVL family protein )

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-08
Identity = 20/32 (62.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 49 SFTRKCARLVKEQRARFYIMRRCVTMLICWHD 81
          +F +KC+ +VK+QRA+FYI+RRC+ ML+CWHD
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45

[Close]

BLAST of MS003087 vs. TAIR 10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5 )

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-08
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 32  SKKDRSSNSNSNSHRRCSFTRKCARLVKEQRARFYIMRRCVTMLICWHDY 82
           S   + S S S S +  S TRKC  + KE ++RFYIM+RCV ML+CWH +
Sbjct: 91  SSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

The following BLAST results are available for this feature:

BLAST of MS003087 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51326.1	6.3e-22	66.67	hypothetical protein Csa_009192 [Cucumis sativus]	[more]
KAF3433679.1	4.1e-21	64.52	hypothetical protein FNV43_RR24782 [Rhamnella rubrinervis]	[more]
XP_022938385.1	2.6e-20	66.67	uncharacterized protein LOC111444651 [Cucurbita moschata] >KAG6578688.1 hypothet...	[more]
KAE7996759.1	4.5e-20	68.83	hypothetical protein FH972_001452 [Carpinus fangiana]	[more]
KAB1217849.1	5.9e-20	74.65	hypothetical protein CJ030_MR3G014741 [Morella rubra]	[more]

BLAST of MS003087 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8S3	8.2e-17	61.25	Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1	[more]
Q6IM93	1.3e-09	60.42	Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1	[more]
Q8L7D0	3.7e-09	58.49	Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1	[more]
Q7XXN8	4.5e-07	62.50	Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1	[more]
Q8LE84	7.7e-07	50.00	Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1	[more]

BLAST of MS003087 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB0	3.0e-22	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517730 PE=4 SV=1	[more]
A0A6J1FJM7	1.3e-20	66.67	uncharacterized protein LOC111444651 OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A5N6QDM8	2.2e-20	68.83	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001452 PE=4 SV=1	[more]
A0A6A1VY14	2.8e-20	74.65	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G014741 PE=4 SV=1	[more]
A0A498JFM7	8.3e-20	69.33	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_024162 PE=4 SV=1	[more]

BLAST of MS003087 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39705.1	5.9e-18	61.25	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	9.0e-11	60.42	ROTUNDIFOLIA like 7	[more]
AT2G29125.1	2.6e-10	58.49	ROTUNDIFOLIA like 2	[more]
AT2G36985.1	3.2e-08	62.50	DVL family protein	[more]
AT5G59510.1	5.5e-08	50.00	ROTUNDIFOLIA like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 59..77 e-value: 2.2E-12 score: 46.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33102:SF51	ROTUNDIFOLIA-LIKE PROTEIN	coord: 28..84
None	No IPR available	PANTHER	PTHR33102	DVL19-RELATED-RELATED	coord: 28..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003087.1	MS003087.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation